"
Team:UEA-JIC Norwich/Nittygritty-algae
From 2011.igem.org
Benjevans1 (Talk | contribs) |
Benjevans1 (Talk | contribs) |
||
| Line 19: | Line 19: | ||
<br> | <br> | ||
| - | < | + | <h2 style="font-family:verdana;color:green">Chlamydomonas Fact File</h2> |
| - | <p> | + | <p>Name:<i>Chlamydomonas reinhardtii</i></p> |
<br> | <br> | ||
| - | < | + | <h3 style="font-family:verdana;color:green">Attributes</h3> |
<p>Can be transformed by a variety of methods – electroporation; the bacterium <i>Agrobacterium tumorfaciens</i>; glass beads; or by a biolistic particle delivery system (gene gun)</p> | <p>Can be transformed by a variety of methods – electroporation; the bacterium <i>Agrobacterium tumorfaciens</i>; glass beads; or by a biolistic particle delivery system (gene gun)</p> | ||
<p>Eukaryotic photosynthetic organism – therefore its post translational modifications will more closely reflect those seen in plants and other higher organisms when compared to, for example, <i>E.coli</i></p> | <p>Eukaryotic photosynthetic organism – therefore its post translational modifications will more closely reflect those seen in plants and other higher organisms when compared to, for example, <i>E.coli</i></p> | ||
<br> | <br> | ||
| - | < | + | <h3 style="font-family:verdana;color:green">Difficulties of Use</h3> |
<p>Many strains have a cell wall, and therefore prove difficult to transform</p> | <p>Many strains have a cell wall, and therefore prove difficult to transform</p> | ||
<p>Growing time of around a week in cultures or plates</p> | <p>Growing time of around a week in cultures or plates</p> | ||
<p>Low transformation frequency due to genome integration of plasmids</p> | <p>Low transformation frequency due to genome integration of plasmids</p> | ||
<br> | <br> | ||
| - | < | + | <h2 style="font-family:verdana;color:green">Growth Conditions</h2> |
<p>Requires TAP (tris-acetone phosphate) media</p> | <p>Requires TAP (tris-acetone phosphate) media</p> | ||
<p>Must be grown in sunlight</p> | <p>Must be grown in sunlight</p> | ||
Revision as of 10:38, 16 August 2011
ALGAE
We are planning to transform the algal species Chlamydomonas reinhardtii. This is a single celled, photosynthetic eukaryote. We will be using the specific strain CC-4350 cw15-302 mt+. This strain is biflagellate with a high transformation frequency, due in part to its lack of a cell wall. Its genome has been sequenced, allowing us to research its codon bias.
There are twenty common amino acids, but over sixty codon configurations. So, each amino acid can be coded for by multiple codons. The code is thus said to be degenerate. However, most organisms display a preference for one codon or another, and so prefer to express a given amino acid by a certain codon. This is known as the codon bias. We researched the codon bias for Chlamydomonas reinhardtii, and plan to use this information to optimise the Biobricks we wish to use for expression in C. reinhardtii.
Chlamydomonas Fact File
Name:Chlamydomonas reinhardtii
Attributes
Can be transformed by a variety of methods – electroporation; the bacterium Agrobacterium tumorfaciens; glass beads; or by a biolistic particle delivery system (gene gun)
Eukaryotic photosynthetic organism – therefore its post translational modifications will more closely reflect those seen in plants and other higher organisms when compared to, for example, E.coli
Difficulties of Use
Many strains have a cell wall, and therefore prove difficult to transform
Growing time of around a week in cultures or plates
Low transformation frequency due to genome integration of plasmids
Growth Conditions
Requires TAP (tris-acetone phosphate) media
Must be grown in sunlight
Must be grown at 25°C
Must be grown in an incubator shaker to ensure adequate aeration of the media with carbon dioxide
| Stock solution | Volume | Component | Concentration in stock Solution | Concentration in final media |
|---|---|---|---|---|
| Tris base | 2.42g | H2NC(CH2OH)3 | 2.00 . 10-2 M | |
| TAP-salts (Beijerinck salts) | 25mL | NH4Cl MgSO4 . 7H2O CaCl2 . 2H2O | 15 g . L-1
4 g . L-1 2 g . L-1 |
7.00 . 10-3 M
8.30 . 10-4 M 4.50 . 10-4 M |
| Phosphate solution | 1mL | K2HPO4 KH2PO4 | 28.8 g . 100 mL-1 14.4 g . 100 mL-1 | 1.65 . 10-3 M 1.05 . 10-3 M |
| Hunter’s trace Elements | 1mL | 5.00 g . 100 mL-1
2.20 g . 100 mL-1 1.14 g . 100 mL-1 0.50 g . 100 mL-1 0.50 g . 100 mL-1 0.16 g . 100 mL-1 0.16 g . 100 mL-1 0.11 g . 100 mL-1 |
5.00 g . 100 mL-1
2.20 g . 100 mL-1 1.14 g . 100 mL-1 0.50 g . 100 mL-1 0.50 g . 100 mL-1 0.16 g . 100 mL-1 0.16 g . 100 mL-1 0.11 g . 100 mL-1 |
1.34 . 10-4 M
1.36 . 10-4 M 1.84 . 10-4 M 4.00 . 10-5 M 3.29 . 10-5 M 1.23 . 10-5 M 1.00 . 10-5 M 4.44 . 10-6 M |
| Acetic Acid | 1mL | CH3COOH |
