Team:Cambridge/Project

From 2011.igem.org

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Bactiridescence was based around the properties of reflectin, a squid protein with the highest refractive index of any known proteinaceous substance. In squid this protein forms complex platelets which act as [http://en.wikipedia.org/wiki/Bragg_reflector Bragg reflectors] to provide camouflage.

We aimed to express reflectin in E. coli and to investigate its optical properties in order to build the groundwork for the manipulation of living structural colour. We also looked at the over-expression of reflectin in E. coli, in order to obtain relatively pure samples of the protein for making thin films.

Much of our work (particularly the in vivo work) simply hadn't been tried before, so, while we had high hopes, we could not be sure as to what would happen.

Achievements

In one short summer the 2011 Cambridge team has produced a set of BioBrick parts to allow future researchers to explore synthetic biology applications for structural colour.

In Vivo

Working with living cells we have;

Imaged squid tissue using novel techniques to explore the in vivo properties of reflectins.
Succesfully produced reflectins in E. coli.
Characterised best practices for in vivo reflectin production.

In Vitro

A multilayer thin film

By engineering E. coli to overexpress reflectins we have;

Purified reflectin and documented best practice for high purity yields.
Made thin films which show structural colours.
Demonstrated the rapid colour changes possible with reflectin.
- Videos of our thin films are available on [http://www.youtube.com/user/cambridgeigem2011 youtube].

Software

The Gibthon logo

We contributed to [http://www.gibthon.org/ Gibthon], an open-source collection of web-based tools for construct design, fully compatible with both BioBrick standards and newer assembly techniques.

Greatly improved import and display of fragments (including support for [http://partsregistry.org/Main_Page partsregistry.org]).
Added tools to allow management of uploaded parts.

Future work

By creating the first BioBrick parts for production of structural colour, we hope to facilitate further research. Although time did not allow us to explore the full potential of our project, we have some ideas for what could be done next.

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 {{Template:Team:Cambridge/CAM_2011_TEMPLATE_HEAD}}
-Bactiridescence was based around the properties of <a href='/Team:Cambridge/Reflectin'>reflectin</a>, a squid protein with the highest refractive index of any known proteinaceous substance. In squid this protein forms complex platelets which act as Bragg reflectors to provide camouflage.
+Bact<b>iridescence</b> was based around the properties of [[Team:Cambridge/Project/Background | reflectin]], a squid protein with the highest refractive index of any known proteinaceous substance. In squid this protein forms complex platelets which act as [http://en.wikipedia.org/wiki/Bragg_reflector Bragg reflectors] to provide camouflage.
-We aimed to <a href='/Team:Cambridge/Project/In_Vivo'>express reflectin in E. Coli</a> and to investigate it's optical properties in order to build the groundwork for the manipulation of living structural colour. We also looked at the <a href='/Team:Cambridge/Project/In_Vitro'>over-expression of reflectin in E.Coli</a>, in order to obtain relatively pure samples of the protein for making thin films.
+===Project Goals===
-Initially we looked at some squid tissue using a confocal microscope, to see it's effect in squid cells.
+We aimed to [[Team:Cambridge/Project/In_Vivo | express reflectin in ''E. coli'']] and to investigate its optical properties in order to build the groundwork for the manipulation of living structural colour. We also looked at the [[Team:Cambridge/Project/In_Vitro | over-expression of reflectin in ''E. coli'']], in order to obtain relatively pure samples of the protein for making thin films.
-When we over-expressed reflectin in E.Coli, we found (by making a GFP fusion) that while reflectin is surprisingly non-toxic to E.Coli, it formed inclusion bodies. We then extracted these inclusion bodies, purified the protein using a number of different techniques, and made thin films by spin-coating.
+Much of our work (particularly the in vivo work) simply hadn't been tried before, so, while we had high hopes, we could not be sure as to what would happen.
-In order to express reflectin at lower levels, we made an arabinose inducible  version, both with and without a GFP-fusion. We found that at lower levels of expression, reflectin would not form inclusion bodies, but appeared to be uniformly distributed throughout the cell. We made several attempts to image this – hoping to find some change in optical properties – but found that while the induced cells did appear to exhibit iridescence, so did the uninduced. This, we theorise, is due to thin film interference around the cell wall and membrane.
+==Achievements==
+In one short summer the [[Team:Cambridge/Team | 2011 Cambridge team]] has produced a set of [[Team:Cambridge/Parts | BioBrick parts]] to allow future researchers to explore synthetic biology applications for structural colour.
-We also attempted to export both our reflectin and our reflectin-GFP to the periplasm, in the hope that this environment would be more similar to the environment in which reflectin naturally occurs. As of writing, this has yet to be successful .
+===[[Team:Cambridge/Project/In_Vivo | In Vivo]]===
+Working with living cells we have;
+*[[Team:Cambridge/Project/Microscopy | Imaged squid tissue using novel techniques]] to explore the in vivo properties of reflectins.
+*Succesfully produced reflectins in ''E. coli''.
+*Characterised best practices for in vivo reflectin production.
-Our project attempts to lay some groundwork for future research in to reflectins. Reflectin has several possible future applications, from display technologies to rapid bio-reporters.
+===[[Team:Cambridge/Project/In_Vitro | In Vitro]]===
+[[File:Cam_Multilayer_drop_1.jpg | right | thumb | 150px | A multilayer thin film]]
+By engineering ''E. coli'' to overexpress reflectins we have;
+*[[Team:Cambridge/Experiments/Protein_Purification | Purified reflectin]] and documented best practice for high purity yields.
+*Made [[Team:Cambridge/Project/Microscopy#Reflectin_Thin_Films | thin films]] which show structural colours.
+*Demonstrated the rapid colour changes possible with reflectin.
+**Videos of our thin films are available on [http://www.youtube.com/user/cambridgeigem2011 youtube].
+===[[Team:Cambridge/Project/Gibthon | Software]]===
+[[File:Gibthon2.0beta.png | left | thumb | 100px | The Gibthon logo]]
+We contributed to [http://www.gibthon.org/ Gibthon], an open-source collection of web-based tools for construct design, fully compatible with both BioBrick standards and newer assembly techniques.
+*Greatly improved import and display of fragments (including support for [http://partsregistry.org/Main_Page partsregistry.org]).
+*Added tools to allow management of uploaded parts.
+<html><div style='clear:both'></div></html>
+==[[Team:Cambridge/Project/Future | Future work]]==
+By creating the first BioBrick parts for production of structural colour, we hope to facilitate further research.  Although time did not allow us to explore the full potential of our project, we have some ideas for what could be done next.
 {{Template:Team:Cambridge/CAM_2011_TEMPLATE_FOOT}}