Team:Brown-Stanford/PowerCell/Background

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== '''Cyanobacteria''' ==
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== '''Photosynthesis and Mars''' ==
-
The search for a suitable chassis on which to build the PowerCell project turned up several promising contenders: algae are very efficient solar powerhouses, and E. coli has been engineered to express rubisco and perform a rudimentary form of carbon sequestration, among others.  After carefully weighing our options, we hit upon cyanobacteria, commonly (and slightly inaccurately) called blue-green algae.  At the end of our deliberations, the grand winner was Anaebaena PCC 7120, a filamentous organism very much resembling a tiny, green, pearl necklace.
+
 +
Photosynthesis on Earth represents an efficient way of converting solar to chemical energy on a large scale. However, photosynthetic output depends on variables such as atmospheric composition and amount of accessible sunlight. In this section we introduce environmental conditions on Mars that need to be factored when assessing the usefulness of photosynthesis on Mars.
-
[[File:Brown-Stanford Anabaena mugshot.JPG|300px|thumb|Light micrograph of Anabaena PCC 7120]]
+
=== '''Atmosphere''' ===
 +
The Martian atmosphere is strikingly similar to our own atmosphere on Earth; we share the top four components in atmospheric composition (N2, O2, Ar, and CO2), albeit in varying amounts.
-
The reasons for our choice were severalfold. Our primary requirements were that the organism access nitrogen and carbon dioxide, and accept our DNA in some relatively easy manner. These will each be explained in greater detail in sections below. In addition, we wanted an organism that could survive on minimal media, produce all of its products in aerobic conditions, and live a happy, fulfilled life with as little auxiliary equipment as possible.  
+
{| border="1" align="center" style="text-align:center;"
 +
|Mars
 +
|Earth
 +
|-
 +
|6.36 mb pressure
 +
|1014 mb pressure
 +
|-
 +
|Carbon dioxide 95.32%
 +
|Nitrogen 78.08%
 +
|-
 +
|Nitrogen 2.70%
 +
|Oxygen 20.95%
 +
|-
 +
|Argon 1.60%
 +
|Argon 9340 ppm
 +
|-
 +
|Oxygen 0.13%
 +
|Carbon dioxide 380 ppm
 +
|-
 +
|Carbon monoxide 0.08%
 +
|Neon 18.18 ppm
 +
|}
 +
Mars: http://nssdc.gsfc.nasa.gov/planetary/factsheet/marsfact.html
-
=== '''Nitrogen and Carbon Dioxide''' ===
+
Earth: http://nssdc.gsfc.nasa.gov/planetary/factsheet/earthfact.html
-
Anaebaena is a diazotroph, or “N2 eater.”  The organism has evolved a nitrogenase which is capable of overcoming the considerable triple bond between the two nitrogen atoms, although the reaction can only take place in an anaerobic environment. 
 
-
[[File:Brown-Stanford nitrogenase diagram.png|100px|thumb|Nitrogenase]]
+
Two main differences stand out: the atmosphere of Mars is overwhelmingly composed of CO2, and is only 0.6% as thick as that of Earth.
-
http://chemwiki.ucdavis.edu/index.php?title=Wikitexts/UC_Davis/UCD_Chem_124A:_Berben/Nitrogenase/Nitrogenase_2&bc=0
+
-
For this reason, many diazotrophic cyanobacteria require anaerobic growth conditions, but Anabaena has evolved a method of separating oxygen and the N2 cleaving process; specialized cells, called heterocysts, form along the filament in nitrogen-poor conditions.  These specialized cells, visibly larger and darker than the rest, form an anaerobic intracellular microenvironment where the nitrogenase can do its job.  The nitrogen-containing products are exported to adjacent vegetative cells via plasmodesmata, through which photosynthesized carbon products return.  
+
Studies of lichen in Mars conditions suggest, however, that these differences may not be so bad (de Vera 2010). Photosynthetic activity is not diminished by a reduction to Mars atmospheric pressure (at least within the time frame of days). Furthermore, while Marslike levels of CO2 reduce photosynthetic activity by 60% (while keeping all other conditions within Earth ranges), the reduction to Mars pressure actually improves activity back to levels seen in wholly Earth conditions.  
 +
This would suggest that the atmospheric composition and density of Mars, although inhospitable to human survival, are not incompatible to photosynthesis.
 +
=== '''Solar irradiance''' ===
 +
A crucial factor to consider is the amount of solar energy available on Mars. Irradiance is a measure  of how much solar energy reaches a planet from the Sun, and is calculated from the length of the day-night cycle, distance from the Sun, position of orbit, etc. (http://ccar.colorado.edu/asen5050/projects/projects_2001/benoit/solar_irradiance_on_mars.htm).
-
[[File:Brown-Stanford Heterocysts.JPG|300px|thumb|Heterocysts on an Anabaena filament]]
 
-
http://www.uniprot.org/taxonomy/103690
 
-
Anabaena can live in aerobic conditions, fix nitrogen and photosynthesize sugars. They are able to provide almost everything they need, making them capable of living on very minimal media—clear water with a few trace minerals.  It follows that we can harness their self-sufficiency to provide for more dependent organisms, such as E. coli. All we have to do is enforce some compulsory generosity, and although Anabaena won’t be as well-fed as it was as a selfish microbe, the E. coli it is supporting will have a food source where it otherwise would have gone hungry.
+
[[File:Brown-Stanford Solar irradiance.jpg|center|frame|Mars solar cycle]]
 +
http://www-mars.lmd.jussieu.fr/mars/time/solar_longitude.html
-
=== '''Transformation of Cyanobacteria''' ===
+
Based on this method, solar irradiance at the mean distance between Mars and the Sun reaches a theoretical maximum of 590W/m^2 (assuming no distorting effects from the Martian atmosphere).  
-
There are cyanobacteria which will accept DNA without complaint.  Synechocystis elongatus, for example, will simply take up naked DNA in solution and express it.  Anabaena, although it has been transformed, must take its DNA through a rather circuitous path; the DNA construct must first be placed in a cargo plasmid and transformed into E. coli by traditional means.  Transfer to Anabaena takes place by conjugation, facilitated by a second E. coli strain carrying a plasmid encoding the machinery for bacterial conjugation.  
+
 +
As a point of comparison, solar irradiance for Earth (measured from satellite instrumentation above the atmosphere) is approximately 1360W/m^2 (Li 2010). This means that Mars, which is 1.52 times as far from the Sun as Earth, receives 43% as much solar energy per m^2.
 +
To achieve a more meaningful measure of irradiance for photosynthesis, however, we have to factor absorption in the atmosphere before solar rays reach the Martian surface.
-
Another problem is the propensity of Anabaena to slice and dice foreign DNA with isoschizomers of the restriction enzymes AvaI, AvaII and AvaIII.  This has been addressed with methyltransferases targeting the same sequences; yes, that means a third E. coli strain carrying these methyltransferases (a helper plasmid) participates in the conjugation.  At the end of all this, a certain number of cyanobacterial cells take up the DNA, and are selected for with neomycin on minimal media.  As soon as the unsuccessful exconjugates and the bacterial parental strains die off, transformant colonies can be picked.  This is best started well ahead of any sort of deadline—the transformants can take upwards of a week to grow.
 
-
[[File:Brown-Stanford Triparental mating.JPG|300px|thumb|Triparental mating: Our desired construct (from the '''donor strain''') and a helper plasmid are inserted into a '''helper strain'''. The '''helper strain''' and '''conjugative strain''' are spotted with the '''recipient''' Anabaena for the three-parent mating]]
+
=== '''Particulates in the Martian atmosphere''' ===
 +
Dust is a huge part of the Martian environment on a local and global scale! Particulate matter in the atmosphere can have a dramatic impact on the amount of sunlight reaching the Martian surface.  For a vivid example, look at the decreasing visibility in this surface view from the NASA Opportunity rover amidst a brewing dust storm. Were this kind of disruption sustained for too long, any settlement or machine wholly dependent on solar energy would fail.
 +
 
 +
 
 +
 
 +
[[File:Brown-Stanford Opportunity dust storm.jpg|center|frame|Deteriorating conditions on Mars]]
 +
http://www.nasa.gov/mission_pages/mer/images/20070720.html
 +
 
 +
 
 +
τ (greek tau) stands for optical density, which is a measure of how transparent the atmosphere is. τ = 0 represents perfect transparency
 +
 
 +
Excluding the effect of regional storms, which interfere with sunlight in a temporary but unpredictable way, there are other dust dynamics we can consider as more constant.
 +
 
 +
Using ground measurements taken by NASA rovers over time, we know that the visible optical depth of the Martian atmosphere is τ  = 0.9 (Lemmon 2004). Put another way, this means that typically around 10^(-0.9) or 13%, of incoming sunlight is not scattered or absorbed before it hits the Martian surface.
 +
 
 +
Recent data gathered from satellites such as the Mars Reconnaissance Orbiter (MRO) have begun to shed more light on the distribution and layering of dust. In particular, the MRO is able to take vertical profiles in addition to top-down images, offering a three-dimensional view.
 +
 
 +
 
 +
 
 +
[[File:Brown-Stanford MRO MCS.jpg|center|frame|The Mars Reconnaissance Orbiter]]
 +
NASA
 +
 
 +
 
 +
 
 +
[[File:Brown-Stanford McCleese 2010 dust opacity.jpg|center|frame|Cross sections of dust opacity, with latitude on the X axis and altitude on the Y (measured in pressure); each image is a different time of year]]
 +
McCleese 2010
 +
 
 +
From satellite imagery, researchers have also compiled maps showing the overall geographical distribution of dust coverage over a sample two-week span. Global dust patterns are a complex phenomenon, but must be considered in the placement of systems utilizing photosynthesis.  
 +
 
 +
 
 +
[[File:Brown-Stanford Global dust.gif|center|frame|Dust patterning over a 14 day span]]
 +
Images from http://tes.asu.edu/dust/, animation created by team
 +
 
 +
=== '''H2O Content''' ===
 +
As photosynthesis is a water-dependent process, the distribution of water on Mars is of interest. Enormous quantities of H2O are contained in the polar ice caps; the southern ice cap would submerge the entire planet in 11 meters of water if melted.
 +
 
 +
[[File:Brown-Stanford Mars Ice Cap.jpg|center|frame]]
 +
 
 +
Geographical features on the Martian surface suggest water erosion in quantities far greater than can be accounted for by ice in the polar regions (Barlow). For this reasons, scientists hypothesize large amounts of ground ice and subsurface reservoirs exist across the planet. Though there are no comprehensive surveys of subsurface water deposits, there have been numerous studies of yet another source.
 +
 
 +
Vapor content has been measured from several satellites orbiting Mars (Smith 2001, Melchiorri 2006, Fouchet 2007). Cameras circling above use spectrometers to image the planet and note the intensity of peaks at certain wavelengths corresponding to H2O. From this information, they can quantify the amount of water vapor existing in a hypothetical column of atmosphere (this is measured in pr-μm, or micrometers of precipitable H2O)
 +
 
 +
 
 +
[[File:Brown-Stanford Water density at Northern latitudes.jpg|center|frame|H2O column density at High Northern latitudes (think the “Arctic circle”)]]
 +
Melchiorri 2006
 +
 
 +
 
 +
Planetary scientists have systematically recorded the density of atmospheric H2O column for the entire surface of Mars, compiling a global map of water vapor.
 +
 
 +
[[File:Brown-Stanford average Mars global water.jpg|center|frame|sSeasonally averaged water vapor abundance (in um of precipitation)]]
 +
Smith 2001
 +
 
 +
 
 +
From this map it becomes clear that, as on Earth, there are variations in the distribution of atmospheric water vapor based on longitude and latitude. In particular, the Northern hemisphere contains significantly more atmospheric H2O than the South.
 +
 
 +
As with dust, the distribution of water in the Martian environment represents a complex system which should be considered in the calculus of photosynthesis in the Martian colony.
 +
 
 +
=== '''Estimating the extent of energy conversion''' ===
{{:Team:Brown-Stanford/Templates/Foot}}
{{:Team:Brown-Stanford/Templates/Foot}}

Revision as of 17:06, 27 September 2011

Brown-Stanford
iGEM

Photosynthesis and Mars

Photosynthesis on Earth represents an efficient way of converting solar to chemical energy on a large scale. However, photosynthetic output depends on variables such as atmospheric composition and amount of accessible sunlight. In this section we introduce environmental conditions on Mars that need to be factored when assessing the usefulness of photosynthesis on Mars.

Atmosphere

The Martian atmosphere is strikingly similar to our own atmosphere on Earth; we share the top four components in atmospheric composition (N2, O2, Ar, and CO2), albeit in varying amounts.

Mars Earth
6.36 mb pressure 1014 mb pressure
Carbon dioxide 95.32% Nitrogen 78.08%
Nitrogen 2.70% Oxygen 20.95%
Argon 1.60% Argon 9340 ppm
Oxygen 0.13% Carbon dioxide 380 ppm
Carbon monoxide 0.08% Neon 18.18 ppm

Mars: http://nssdc.gsfc.nasa.gov/planetary/factsheet/marsfact.html

Earth: http://nssdc.gsfc.nasa.gov/planetary/factsheet/earthfact.html


Two main differences stand out: the atmosphere of Mars is overwhelmingly composed of CO2, and is only 0.6% as thick as that of Earth.

Studies of lichen in Mars conditions suggest, however, that these differences may not be so bad (de Vera 2010). Photosynthetic activity is not diminished by a reduction to Mars atmospheric pressure (at least within the time frame of days). Furthermore, while Marslike levels of CO2 reduce photosynthetic activity by 60% (while keeping all other conditions within Earth ranges), the reduction to Mars pressure actually improves activity back to levels seen in wholly Earth conditions.

This would suggest that the atmospheric composition and density of Mars, although inhospitable to human survival, are not incompatible to photosynthesis.

Solar irradiance

A crucial factor to consider is the amount of solar energy available on Mars. Irradiance is a measure of how much solar energy reaches a planet from the Sun, and is calculated from the length of the day-night cycle, distance from the Sun, position of orbit, etc. (http://ccar.colorado.edu/asen5050/projects/projects_2001/benoit/solar_irradiance_on_mars.htm).


Mars solar cycle

http://www-mars.lmd.jussieu.fr/mars/time/solar_longitude.html

Based on this method, solar irradiance at the mean distance between Mars and the Sun reaches a theoretical maximum of 590W/m^2 (assuming no distorting effects from the Martian atmosphere).

As a point of comparison, solar irradiance for Earth (measured from satellite instrumentation above the atmosphere) is approximately 1360W/m^2 (Li 2010). This means that Mars, which is 1.52 times as far from the Sun as Earth, receives 43% as much solar energy per m^2.

To achieve a more meaningful measure of irradiance for photosynthesis, however, we have to factor absorption in the atmosphere before solar rays reach the Martian surface.


Particulates in the Martian atmosphere

Dust is a huge part of the Martian environment on a local and global scale! Particulate matter in the atmosphere can have a dramatic impact on the amount of sunlight reaching the Martian surface. For a vivid example, look at the decreasing visibility in this surface view from the NASA Opportunity rover amidst a brewing dust storm. Were this kind of disruption sustained for too long, any settlement or machine wholly dependent on solar energy would fail.


Deteriorating conditions on Mars

http://www.nasa.gov/mission_pages/mer/images/20070720.html


τ (greek tau) stands for optical density, which is a measure of how transparent the atmosphere is. τ = 0 represents perfect transparency

Excluding the effect of regional storms, which interfere with sunlight in a temporary but unpredictable way, there are other dust dynamics we can consider as more constant.

Using ground measurements taken by NASA rovers over time, we know that the visible optical depth of the Martian atmosphere is τ = 0.9 (Lemmon 2004). Put another way, this means that typically around 10^(-0.9) or 13%, of incoming sunlight is not scattered or absorbed before it hits the Martian surface.

Recent data gathered from satellites such as the Mars Reconnaissance Orbiter (MRO) have begun to shed more light on the distribution and layering of dust. In particular, the MRO is able to take vertical profiles in addition to top-down images, offering a three-dimensional view.


The Mars Reconnaissance Orbiter

NASA


Cross sections of dust opacity, with latitude on the X axis and altitude on the Y (measured in pressure); each image is a different time of year

McCleese 2010

From satellite imagery, researchers have also compiled maps showing the overall geographical distribution of dust coverage over a sample two-week span. Global dust patterns are a complex phenomenon, but must be considered in the placement of systems utilizing photosynthesis.


File:Brown-Stanford Global dust.gif
Dust patterning over a 14 day span

Images from http://tes.asu.edu/dust/, animation created by team

H2O Content

As photosynthesis is a water-dependent process, the distribution of water on Mars is of interest. Enormous quantities of H2O are contained in the polar ice caps; the southern ice cap would submerge the entire planet in 11 meters of water if melted.

Brown-Stanford Mars Ice Cap.jpg

Geographical features on the Martian surface suggest water erosion in quantities far greater than can be accounted for by ice in the polar regions (Barlow). For this reasons, scientists hypothesize large amounts of ground ice and subsurface reservoirs exist across the planet. Though there are no comprehensive surveys of subsurface water deposits, there have been numerous studies of yet another source.

Vapor content has been measured from several satellites orbiting Mars (Smith 2001, Melchiorri 2006, Fouchet 2007). Cameras circling above use spectrometers to image the planet and note the intensity of peaks at certain wavelengths corresponding to H2O. From this information, they can quantify the amount of water vapor existing in a hypothetical column of atmosphere (this is measured in pr-μm, or micrometers of precipitable H2O)


H2O column density at High Northern latitudes (think the “Arctic circle”)

Melchiorri 2006


Planetary scientists have systematically recorded the density of atmospheric H2O column for the entire surface of Mars, compiling a global map of water vapor.

sSeasonally averaged water vapor abundance (in um of precipitation)

Smith 2001


From this map it becomes clear that, as on Earth, there are variations in the distribution of atmospheric water vapor based on longitude and latitude. In particular, the Northern hemisphere contains significantly more atmospheric H2O than the South.

As with dust, the distribution of water in the Martian environment represents a complex system which should be considered in the calculus of photosynthesis in the Martian colony.

Estimating the extent of energy conversion