Team:Brown-Stanford/PowerCell/Cyanobacteria

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Cyanobacteria

The search for a suitable chassis on which to build the PowerCell project turned up several promising contenders: algae are very efficient solar powerhouses, and E. coli has been engineered to express rubisco and perform a rudimentary form of carbon sequestration, among others. After carefully weighing our options, we hit upon cyanobacteria, commonly (and slightly inaccurately) called blue-green algae.

Cyanobacteria proliferate in bodies of water and are an important primary producer in the Earth ecosystem

Bacteria that fix atmospheric nitrogen are part of the terrestrial nitrogen cycle (photo courtesy the EPA)

Anabaena 7120

To host PowerCell, we chose a [http://en.wikipedia.org/wiki/Diazotroph diazotropic] cyanobacterium, Anabaena 7120. Anabaena 7120 has several characteristics that make it a good choice of host - most importantly its ability to fix atmospheric nitrogen into biologically useful forms.

Anabaena 7120 is a filamentous bacterium capable of both photosynthesis and nitrogen fixation. Light micrograph of one of our Anabaena, 630x bright field

Nitrogen and Oxygen

Anaebaena is a diazotroph, or “N₂ eater.” The organism has evolved a nitrogenase which is capable of overcoming the triple covalent bond between the two nitrogen atoms, although the reaction is oxygen-sensitive and can only take place in an anaerobic environment.

Nitrogenase ¹

Heterocysts on an Anabaena filament (http://www.uniprot.org/taxonomy/103690)

For this reason, most diazotrophs separate the processes of photosynthesis and nitrogen fixation temporally – that is, they photosynthesize in the day and fix nitrogen at night. Anabaena 7120 has a different way around this problem. It forms long filaments of cells containing two different cell types, normal (vegetative) cells, and heterocysts.

Heterocysts are specialized cells, visibly larger and darker than the rest, and form thick cell walls which house an anaerobic intracellular microenvironment where the nitrogenase can perform nitrogen fixation. The nitrogen-containing products are exported to adjacent vegetative cells via plasmodesmata, through which photosynthesized carbon products return. Normal (vegetative) cells carry on with photosynthesis. The two cell types then share nutrients up and down the filament, thus providing each cell with all the nutrients it needs.

Anabaena can live in aerobic conditions, fix nitrogen and photosynthesize sugars. They are able to produce almost everything they need, making them capable of living on very minimal media—clear water with a few trace minerals. It follows that we can harness their self-sufficiency to provide for more dependent organisms, such as E. coli. All we have to do is enforce some compulsory generosity, and although Anabaena won’t be as well-fed as it was as a selfish microbe, the E. coli it is supporting will have a food source where it otherwise would have gone hungry.

References

¹ http://chemwiki.ucdavis.edu/Wikitexts/UC_Davis/UCD_Chem_124A:_Berben/Nitrogenase/Nitrogenase_2

@@ Line 11: / Line 11: @@
 </html>
 {{:Team:Brown-Stanford/Templates/Content}}
-SEARCH FOR A SUITABLE POWERCELL CHASSIS:
-CRITERIA: CARBON FIXING, NITROGEN FIXING, MINIMAL MEDIA, ACCEPT DNA (WHY ARE EACH OF THESE IMPORTANT?)
-BRIEF EXPLANATION OF PHOTOSYNTHESIS: CHEMICAL EQUATION, PICTURE OF EARTH CARBON CYCLE
-DIAZOTROPHY: EXPLAIN WHAT IT IS, SHOW EARTH NITROGEN CYCLE, INTRODUCE PROBLEM OF OXYGEN AND NITROGENASE ACTIVITY
--TWO METHODS OF DEALING WITH OXYGEN PROBLEM: UNICELLULAR TEMPORAL CONTROL AND HETEROCYSTS
-ON THIS BASIS, WE SELECTED ANABAENA.
-ANABAENA IS GROWN ON MINIMAL MEDIA, ACCEPTS DNA (JUST CITE A PAPER AND SAY WE WILL ELABORATE ON THIS PROCESS IN OUR EXPT SECTION)
 == '''Cyanobacteria''' ==
-The search for a suitable chassis on which to build the PowerCell project turned up several promising contenders: algae are very efficient solar powerhouses, and E. coli has been engineered to express rubisco and perform a rudimentary form of carbon sequestration, among others.  After carefully weighing our options, we hit upon cyanobacteria, commonly (and slightly inaccurately) called blue-green algae.  At the end of our deliberations, the grand winner was Anaebaena PCC 7120, a filamentous organism very much resembling a tiny, green, pearl necklace.
+The search for a suitable chassis on which to build the PowerCell project turned up several promising contenders: algae are very efficient solar powerhouses, and ''E. coli'' has been engineered to express rubisco and perform a rudimentary form of carbon sequestration, among others.  After carefully weighing our options, we hit upon cyanobacteria, commonly (and slightly inaccurately) called blue-green algae.
-[[File:Brown-Stanford Anabaena mugshot.JPG|300px|thumb|Light micrograph of our Anabaena PCC 7120, 630x brightfield (top) and phase contrast (bottom)]]
+<center>[[File:Brown-Stanford cyanobacteria bloom.JPG|300px|none|thumb|Cyanobacteria proliferate in bodies of water and are an important primary producer in the Earth ecosystem]][[File:Brown-Stanford Nitrogen cycle.JPG|300px|none|thumb|Bacteria that fix atmospheric nitrogen are part of the terrestrial nitrogen cycle (photo courtesy the EPA)]]</center>
-The reasons for our choice were severalfold.  Our primary requirements were that the organism access nitrogen and carbon dioxide, and accept our DNA in some relatively easy manner.  These will each be explained in greater detail in sections below.  In addition, we wanted an organism that could survive on minimal media, produce all of its products in aerobic conditions, and live a happy, fulfilled life with as little auxiliary equipment as possible.
+==='''Anabaena 7120'''===
+To host PowerCell, we chose a [http://en.wikipedia.org/wiki/Diazotroph diazotropic] cyanobacterium, ''Anabaena'' 7120. ''Anabaena'' 7120 has several characteristics that make it a good choice of host - most importantly its ability to fix atmospheric nitrogen into biologically useful forms.
+[[File:Brown-Stanford Anabeana.jpg|500px|center|thumb|''Anabaena'' 7120 is a filamentous bacterium capable of both photosynthesis and nitrogen fixation. Light micrograph of one of our Anabaena, 630x bright field]]
+----
+=== '''Nitrogen and Oxygen''' ===
+''Anaebaena'' is a diazotroph, or “N<sub>2</sub> eater.”  The organism has evolved a nitrogenase which is capable of overcoming the triple covalent bond between the two nitrogen atoms, although the reaction is oxygen-sensitive and can only take place in an anaerobic environment.
+[[File:Brown-Stanford nitrogenase diagram.png|200px|left|thumb|Nitrogenase {{:Team:Brown-Stanford/Templates/FootnoteNumber|1}}]]
-=== '''Nitrogen and Carbon Dioxide''' ===
-Anaebaena is a diazotroph, or “N2 eater.”  The organism has evolved a nitrogenase which is capable of overcoming the considerable triple bond between the two nitrogen atoms, although the reaction can only take place in an anaerobic environment.
-[[File:Brown-Stanford nitrogenase diagram.png|200px|left|thumb|Nitrogenase [1]]]
 [[File:Brown-Stanford Heterocysts.JPG|300px|right|thumb|Heterocysts on an Anabaena filament (http://www.uniprot.org/taxonomy/103690)]]
-For this reason, many diazotrophic cyanobacteria require anaerobic growth conditions, but Anabaena has evolved a method of separating oxygen and the N2 cleaving process; specialized cells, called heterocysts, form along the filament in nitrogen-poor conditions.  These specialized cells, visibly larger and darker than the rest, form an anaerobic intracellular microenvironment where the nitrogenase can do its job.  The nitrogen-containing products are exported to adjacent vegetative cells via plasmodesmata, through which photosynthesized carbon products return.
+For this reason, most diazotrophs separate the processes of photosynthesis and nitrogen fixation temporally – that is, they photosynthesize in the day and fix nitrogen at night. Anabaena 7120 has a different way around this problem. It forms long filaments of cells containing two different cell types, normal (vegetative) cells, and heterocysts.
+Heterocysts are specialized cells, visibly larger and darker than the rest, and form thick cell walls which house an anaerobic intracellular microenvironment where the nitrogenase can perform nitrogen fixation.  The nitrogen-containing products are exported to adjacent vegetative cells via plasmodesmata, through which photosynthesized carbon products return. Normal (vegetative) cells carry on with photosynthesis. The two cell types then share nutrients up and down the filament, thus providing each cell with all the nutrients it needs.
+''Anabaena'' can live in aerobic conditions, fix nitrogen and photosynthesize sugars.  They are able to produce almost everything they need, making them capable of living on very minimal media—clear water with a few trace minerals.  It follows that we can harness their self-sufficiency to provide for more dependent organisms, such as ''E. coli''.  All we have to do is enforce some compulsory generosity, and although ''Anabaena'' won’t be as well-fed as it was as a selfish microbe, the ''E. coli'' it is supporting will have a food source where it otherwise would have gone hungry.
+----
-Anabaena can live in aerobic conditions, fix nitrogen and photosynthesize sugars.  They are able to provide almost everything they need, making them capable of living on very minimal media—clear water with a few trace minerals.  It follows that we can harness their self-sufficiency to provide for more dependent organisms, such as E. coli.  All we have to do is enforce some compulsory generosity, and although Anabaena won’t be as well-fed as it was as a selfish microbe, the E. coli it is supporting will have a food source where it otherwise would have gone hungry.
-=== '''Transformation of Cyanobacteria''' ===
-There are cyanobacteria which will accept DNA without complaint.  Synechocystis elongatus, for example, will simply take up naked DNA in solution and express it.  Anabaena, although it has been transformed, must take its DNA through a rather circuitous path; the DNA construct must first be placed in a cargo plasmid and transformed into E. coli by traditional means.  Transfer to Anabaena takes place by conjugation, facilitated by a second E. coli strain carrying a plasmid encoding the machinery for bacterial conjugation.
-Another problem is the propensity of Anabaena to slice and dice foreign DNA with isoschizomers of the restriction enzymes AvaI, AvaII and AvaIII.  This has been addressed with methyltransferases targeting the same sequences; yes, that means a third E. coli strain carrying these methyltransferases (a helper plasmid) participates in the conjugation.  At the end of all this, a certain number of cyanobacterial cells take up the DNA, and are selected for with neomycin on minimal media.  As soon as the unsuccessful exconjugates and the bacterial parental strains die off, transformant colonies can be picked.  This is best started well ahead of any sort of deadline—the transformants can take upwards of a week to grow.
-[[File:Brown-Stanford Triparental mating.JPG|300px|thumb|Triparental mating: Our desired construct (from the '''donor strain''') and a helper plasmid are inserted into a '''helper strain'''. The '''helper strain''' and '''conjugative strain''' are spotted with the '''recipient''' Anabaena for the three-parent mating]]
 ===References===
-[1] http://chemwiki.ucdavis.edu/index.php?title=Wikitexts/UC_Davis/UCD_Chem_124A:_Berben/Nitrogenase/Nitrogenase_2&bc=0
+{{:Team:Brown-Stanford/Templates/Footnote|1|http://chemwiki.ucdavis.edu/Wikitexts/UC_Davis/UCD_Chem_124A:_Berben/Nitrogenase/Nitrogenase_2}}
 {{:Team:Brown-Stanford/Templates/Foot}}