Team:SJTU-BioX-Shanghai/Project/Application

From 2011.igem.org

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As a translational regulatory tool, our device achieves more precise tuning of protein expression when compared with transcriptional tools. The controlling elements we use in this device are codons and tRNAs, the major participants of translation process. Thus manipulating these elements exert direct effects on protein biosynthesis. Here we offer two potential models for how this device can be used in pathway construction.  
As a translational regulatory tool, our device achieves more precise tuning of protein expression when compared with transcriptional tools. The controlling elements we use in this device are codons and tRNAs, the major participants of translation process. Thus manipulating these elements exert direct effects on protein biosynthesis. Here we offer two potential models for how this device can be used in pathway construction.  
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*Many genes are involved in complex metabolic pathways. The expression level of each gene may be different and affecting the production of final product. If a series of genes are under the control of a single promoter, these genes are likely to express on almost the same level. '''(a)'''
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*1 Many genes are involved in complex metabolic pathways. The expression level of each gene may be different and affecting the production of final product. If a series of genes are under the control of a single promoter, these genes are likely to express on almost the same level. '''(a)'''
Yet to achieve maximum production, each protein amount should be individually regulated. Traditionally we use different promoters to control different genes. '''(b)'''
Yet to achieve maximum production, each protein amount should be individually regulated. Traditionally we use different promoters to control different genes. '''(b)'''
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[[image:11SJTU_App_01.jpg|center|application model]]
[[image:11SJTU_App_01.jpg|center|application model]]
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*In biosynthetic pathways, feedback can affect protein production greatly. Our device can act as a feedback regulating tool to regulate the biosynthesis of target protein.Target protein and rare tRNA are under the control of the same promoter. Rare tRNA amount can regulate target protein biosynthesis through the rare codons inserted into the gene.  
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*2 In biosynthetic pathways, feedback can affect protein production greatly. Our device can act as a feedback regulating tool to regulate the biosynthesis of target protein.Target protein and rare tRNA are under the control of the same promoter. Rare tRNA amount can regulate target protein biosynthesis through the rare codons inserted into the gene.  
[[image:11SJTU_App_02.jpg|center|application model]]
[[image:11SJTU_App_02.jpg|center|application model]]

Revision as of 20:10, 28 October 2011

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    Expansion of Regulating Tools for Synthetic Biology

    I. Multi-Level Regulation

    Fig.1 Multi-Level Regulation

    Our device has expanded the regulating tools for synthetic biology. We control protein biosynthesis through rare codon types, rare codon numbers and rare tRNA amount. Different combinations of these three elements can bring different outcomes in protein expression levels.

    rare codon types: AGA, AGG, CGA, CUA…

    rare codon numbers: 1, 2,3, 4,5, 6,7, 8,9, 10…

    rare tRNA amount: controlled by different strengths of promoters or riboswitch.

    II. Direct and Precise Regulation

    As a translational regulatory tool, our device achieves more precise tuning of protein expression when compared with transcriptional tools. The controlling elements we use in this device are codons and tRNAs, the major participants of translation process. Thus manipulating these elements exert direct effects on protein biosynthesis. Here we offer two potential models for how this device can be used in pathway construction.

    • 1 Many genes are involved in complex metabolic pathways. The expression level of each gene may be different and affecting the production of final product. If a series of genes are under the control of a single promoter, these genes are likely to express on almost the same level. (a)

    Yet to achieve maximum production, each protein amount should be individually regulated. Traditionally we use different promoters to control different genes. (b)

    However with our device, genes can be put under one single promoter yet producing different amount of protein. (c)

    application model
    • 2 In biosynthetic pathways, feedback can affect protein production greatly. Our device can act as a feedback regulating tool to regulate the biosynthesis of target protein.Target protein and rare tRNA are under the control of the same promoter. Rare tRNA amount can regulate target protein biosynthesis through the rare codons inserted into the gene.
    application model

    Another factor that influences protein biosynthesis may be the relative amount of two proteins. Our device can serve as a linker to regulate the relative amount of Protein A and Protein B. Rare codons are put into Gene A and Gene B. When rare tRNA is produced, it can influence the amount of both Protein A and Protein B, along with rare codon types and numbers.

    application model
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