Team:Cornell/Week 21

From 2011.igem.org

(Difference between revisions)
(Sunday, October 23)
(Sunday, October 23)
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:'''PCR of GFP-AviTag-pZE12 to Construct Prefix-GFP-AviTag-Stop-Suffix'''
:'''PCR of GFP-AviTag-pZE12 to Construct Prefix-GFP-AviTag-Stop-Suffix'''
-
::*Previous failures of PCR were due to accidentally use of dATP instead of dNTPs
+
::*Previous failures of PCR were due to accidental use of dATP instead of dNTPs (label on Eppendorf was messy and ambiguous)
 +
:::- 2.5µL 10mM dNTPs
:::- 51°C and 1 minute for annealing temperature and cycle duration
:::- 51°C and 1 minute for annealing temperature and cycle duration
:::- 1µL of template
:::- 1µL of template

Revision as of 20:58, 24 October 2011

Results | Protocol | Notebook | Parts Submitted

Week 1 | Week 2 - 5 | Week 6 | Week 7 | Week 8 | Week 9 | Week 10 | Week 11 | Week 12 | Week 13 | Week 14 | Week 15 | Week 16 | Week 17 | Week 18 | Week 19 | Week 20 | Week 21 |


October 23rd - October 29th

Sunday, October 23

Morning lab work done by: Charlie Chung

Western Blot to Confirm Expression of VioA, B, E and GFP in Cell Lysate
Bradford Assay to Determine Protein Concentration of Samples
  • Prepare 6 serial dilutions of BSA (10mg/mL from NEB) in triplicate
- Add 18.4µL ddH2O to wells A1, B1, C
- Add 1.6µL BSA to Column 1
- Add 10µL ddH2O to wells A2-7, B2-7, C2-7
- Mix and pipet up 10µL from Column 1. Transfer to Column 2 and mix. Discard tips
- Repeat down the columns. For Column 7, discard 10µL after mixing
  • Prepare dilution of control lysate; VioA, B, E; and GFP samples
- Add 8µL ddH2O to wells A8-12, B8-12, C8-12
- Add 2µL of control lysate to Column 8; VioA to Column 9; VioB to Column 10; VioE to Column 11; GFP to Column 12
  • Add 100µL 1X Bio-Rad Protein Assay Bradford Dye to all wells (both BSA standard and samples)
  • Wait 10 minutes
  • Measure absorbance at 595nm using spectrophotometer
  • Calculate volume of sample to be added for 40µg/mL of total protein

  • Add 7µL of protein loading dye (with β-mercaptoethanol) to 35µL sample and boil for 10 minutes at 95°C
  • Load 10µL ladder, 11.4µL control lysate, 24.4µL VioA, 13.4µL VioB, 14.4µL VioE, 13.4µL GFP
  • Run for 1 hour at 90V
  • Transfer onto PVDF membrane for 1 hour at 80mAmp
  • Wash membrane in TBS for 10 minutes
  • Block with 5% dry milk in 20mL of TBS overnight
PCR of GFP-AviTag-pZE12 to Construct Prefix-GFP-AviTag-Stop-Suffix
  • Previous failures of PCR were due to accidental use of dATP instead of dNTPs (label on Eppendorf was messy and ambiguous)
- 2.5µL 10mM dNTPs
- 51°C and 1 minute for annealing temperature and cycle duration
- 1µL of template

Monday, October 24

Tuesday, October 25

Wednesday, October 26

Thursday, October 27

Friday, October 28

Saturday, October 29