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Team:British Columbia/Background
From 2011.igem.org
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Abstract
In nature, monoterpenes are synthesized and secreted by trees as a defense against invading beetles and fungi. The bluestain fungus and mountain pine beetle are in a symbiotic relationship where the fungus deactivates toxic terpenoids and enables the survival of the beetle, which in turn facilitates the spread of the fungus from tree to tree. Meanwhile, from an industrial point of view, various monoterpenes are involved in the production of pharmaceuticals, flavours/fragrances and biofuels. The 2011 UBC iGEM team aims to optimize production of terpenes in Saccharomyces cerevisiae yeast by constructing the biosynthetic pathways necessary to synthesize and retain these compounds. To simulate the system, we are also developing a model of terpene production in yeast using SimBiology Toolkit in MATLAB. In parallel, we are constructing a mathematical model to predict the dynamics of the mountain pine beetle populations in British Columbia, Canada under the influence of our synthetic yeast.
Background
From left to right: a view from Mount Fraser of dying pine trees turning red, a pine beetle, the effects of the bluestain fungus on a pine tree.
The mountain pine beetle (MPB) outbreak in British Columbia, Canada is the largest and most widespread of its kind in North America. This epidemic has killed millions of acres of lodgepole pine trees, endangering the forest health, which hosts a wide range of ecosystems, and threatening the economic, social, and cultural stability of our beautiful province. By 2013, according to the BC Ministry of Forests and Range, mortality of all merchantable pine trees is projected to be as high as 80%.
The blue stain fungus (Grosmannia clavigera) that lives in symbiosis with the MPB also plays a key role in the infestation. By laying their eggs, the beetles simultaneously introduce the blue stain fungus into the sapwood, which helps prevent the tree’s natural defences, a resin flow, from repelling and killing beetles. Thus, both the beetle and fungus are able to overcome the tree’s defences and colonize the insides of the tree. The fungus cuts off water and nutrient transport within the tree while beetle larvae feed off the tree. Within a year, the pine tree will die from lack of water and nutrient transport and its needles will turn red. Mature MPB will leave the dying tree and move on to the next host tree. In the years following the attack, the tree will turn gray with very little foliage. Most of this wood is unsalvageable due to the bluish-black stain left behind on the wood by the fungi. With vast amount of pines being killed, this has also become a fire hazard for BC. The MPB have always been present in nature and have never been a problem until the beginning of this century. Recent climate changes has resulted in warmer winters which has permitted the prolonged survival of these beetles during the winter. Therefore, its population has grown substantially over the past 15 years. The government of Canada and BC’s Ministry of Forestry have already committed over $956 million dollars to mitigate the spread of the MPB to more pine trees in BC. However, no permanent solution has been found so far.
A tremendous amount of research has been invested in studying the genetics and molecular systems of the three players involved: the pine tree, the MPB, and the blue stain fungus. Interestingly, it was noted that not all pine trees in the outbreak area are infested with the MPB. This begs the question: why do some trees not get attacked by the MPB? Researchers have explored this question through genomic studies comparing attacked pines to those left unharmed. A greater expression of genes related to monoterpene production was observed in unharmed trees. In nature, these monoterpenes, a class within the family of terpeniods, are synthesized and secreted by trees as a defence mechanism against insect and fungi infestation within the tree. Despite this finding, the bluestain fungus has also adapted to the tree’s natural defenses by degrading these terpenoids and removing it from its system, allowing the fungi and the MPB to survive under these toxic conditions. However, researchers have postulated that the blue stain fungus is able to evade these conditions only by attacking stressed trees, where levels of monoterpenes produced are less than normal and thus more susceptible to attacks.
Objectives
Wet Lab
Monoterpene Synthases
Our goal is to express synthases that produce monoterpenes (specifically limonene, pinene, carene and cineole) in yeast. Genes encoding these synthases will be inserted into yeast gateway vectors as well as the biobrick plasmid PSB1C3.
Metabolic Genes
Our goal is to express metabolic enzymes (specifically, erg20-2, Idi1 and Hmg2) that optimize the mevalonate pathway in yeast for monoterpene production.
Production of Monoterpenes in Yeast
From an industrial perspective, this yeast will be cultured and harvested for monoterpenes, which will be analysed by gas chromatography mass spectrometry (GC-MS). Yeast is a highly utilized organism in industry (e.g. breweries and also the recently established Amyris biotech company that uses yeast to produce anti-Malarial therapeutics amongst other valuable compounds). We envision that monoterpene-producing yeast will not only be industrially profitable, but also help to alleviate the unsustainable consumption of nature's resources in the quest for biofuels, pharmaceuticals, flavours/fragrances etc.
From an environmental perspective, this yeast will be co-cultured with the bluestain fungus to determine if monoterpene-producing yeast is able to inhibit the growth of the fungus. This yeast is also a biological system that can be screened for potential targets against the fungus. For instance, since the yeast is actively producing monoterpenes, it is possible to look for yeast that have particular mutations that cause increased intolerance against monoterpenes. These mutations will reveal potential strategies against the fungus.
Characterization details here!
Modeling
Monoterpene Production in Yeast
Our goal is to develop a model to assay the secretion and production of monoterpenes in yeast.
Mountain Pine Beetle Epidemic
Our goal is to construct a mathematical model that can predict the dynamics of the mountain pine beetle populations in B.C. under the influence of our synthetic product. This model can be coupled with the strategic planning for future conservation initiatives.
Human Practices
1. Build bridges between individuals, communities and countries.
- The focus is not ourselves, but bridging the gap between researchers in synthetic biology and people outside the field.
2. Actively seek out mutually transforming relationships.
- We do not want a one-way relationship - we want symbiosis!
- We aim to learn as much as we teach.
3. Use multimedia tools to reach the community in an engaging way.
- We want to share our enthusiasm for our iGEM project and inspire people to see how this technology can serve their unique passions
- Outreach at Science World
- Deploy iGEM outreach resources (http://openwetware.org/wiki/IGEM_Outreach)
4. Create a universal accessible iGEM language
- Collaborate with other iGEM teams to compile an iGEM dictionary for synthetic biology and iGEM specific terms '''5. Invest in the FUTURE and pursue sustainable projects''' * Live in a way that incorporates those outside the lab into our comfort zone and personal passions for research, iGEM and synthetic biology. * Start a high school iGEM team and mentor students participating in the Future Leaders in Science program at Science World
- Inform UBC students about our project and iGEM club at Clubs Day and Imagine Week
- Recruit new team members for next year!
Multimedia and outreach details here!
