Team:ETH Zurich/Modeling/References

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<span id="Ref10">[10] [http://www.brenda-enzymes.org/php/result_flat.php4?ecno=1.2.1.10&Suchword=&organism&#92;&#93;=Escherichia+coli&show_tm=0 FIX ME BRENDA Acetaldehyde Dehydrogenase]</span>
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Revision as of 12:50, 15 September 2011

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Modeling References
Single-Cell Model Microfluidics Model Combined Model
Of course, our models do not work without parameters, and in our case, there are quite a lot of them. In order to keep track of all of their respective values and units, we gathered them in a series of tables on this page.

Single-Cell Model

[1] Subhayu Basu, Yoram Gerchman, Cynthia H. Collins, Frances H. Arnold & Ron Weiss, A synthetic multicellular system for programmed pattern formation, Nature Vol. 434, 2005

[2] Garcia-Ojalvo, Michael B. Elowitz, and Steven H. Strogatz, Modeling a synthetic multicellular clock: Repressilators coupled by quorum sensing, PNAS vol. 101 no. 30, 2004

[3] MIT igem 2010

[4] Michael Halter,Alex Tona,Kiran Bhadriraju,Anne L. Plant,John T. Elliott, Automated Live Cell Imaging of Green Fluorescent Protein Degradation in Individual Fibroblasts, Cytometry Part A, Volume 71A Issue 10, 2007

[5] Weber W. et al, Gas-inducible transgene expression in mammalian cells and mice, Nature Biotechnology, volume 22, number 11, November 2004

[6] Michalis Koutinas, Ming-Chi Lam, Alexandros Kiparissides, Rafael Silva-Rocha, Miguel Godinho, Andrew G. Livingston, Efstratios N. Pistikopoulos, Victor de Lorenzo, Vitor A. P. Martins dos Santos and Athanasios Mantalaris, The regulatory logic of m-xylene biodegradation by Pseudomonas putida mt-2 exposed by dynamic modelling of the principal node Ps/Pr of the TOL plasmid, Environmental Microbiology vol. 12, Issue 6, 2010

[7] Development and Testing of a Bacterial Biosensor for Toluene-Based Environmental Contaminants

Microfluidics Model

[8] GSI Environmental Inc, Acetaldehyde, GSI Chemical Database

[9] FIX ME Diffusion in Biofilms

Combined Model

[10] FIX ME BRENDA Acetaldehyde Dehydrogenase

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