Team:Baltimore/Notebook

From 2011.igem.org

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(July, Week 2)
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'''Week 3:'''  [[Tuesday, July 19]];  [[Wednesday, July 20]];  [[Thursday, July 21]];  [[Friday, July 22]];  [[Saturday, July 23]];  [[Sunday, July 24]];
'''Week 3:'''  [[Tuesday, July 19]];  [[Wednesday, July 20]];  [[Thursday, July 21]];  [[Friday, July 22]];  [[Saturday, July 23]];  [[Sunday, July 24]];
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'''Week4:'''  [[Tuesday, July 26]];  [[Wednesday, July 27]];  [[Thursday, July 28]];  [[Friday, July 29]];  [[Saturday, July 30]];  [[Sunday, July 31]];

Revision as of 17:42, 14 July 2011


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Notebook

Run through for abstract and scheduling:

Start with plasmid with taq gene and pst1 gene

Remove pst1 site from taq coding sequence

  • In order to remove the restriction site, do site directed mutagenesis (1day)
  • PCR
  • Digestion
  • Transformation
  • Screening (1day)
    • Dilute DNA
    • Colony PCR individually
    • Digestion of PCR product with pst1
    • Run gel ~2500bp

Add biobrick prefix/suffix to taq coding sequence

  • PCR and add the prefix and suffix as primers (one prefix has an extra AG-make sure to use the correct one) (1-2 days)
    • Run gel
    • Cut out of gel
  • Cut with restriction enzyme
  • Clean up DNA
  • Ligation with vector (could be vector with the terminator sequence, promoter and RBS)
  • Transformation

Add a promoter, transcriptional terminator, ribosome binding site (RBS)

  • Screen colonies (1 day)
    • Colony PCR
    • Restriction Digestion
    • Clean up DNA
  • Sequence (1 day)

Make taq protein

Compare it to other enzymes and make sure it works

Calendar

July

Week 2: Tuesday, July 12; Wednesday, July 13; Thursday, July 14; Friday, July 15; Saturday, July 16; Sunday, July 17;

Week 3: Tuesday, July 19; Wednesday, July 20; Thursday, July 21; Friday, July 22; Saturday, July 23; Sunday, July 24;

Week4: Tuesday, July 26; Wednesday, July 27; Thursday, July 28; Friday, July 29; Saturday, July 30; Sunday, July 31;