Team:ETH Zurich/Modeling/Parameters

From 2011.igem.org

Revision as of 15:11, 12 September 2011 by Irenak (Talk | contribs)

Menu image preload Menu image preload Menu image preload Menu image preload Menu image preload Menu image preload





Parameter Description Value Reference
αTetR TetR production rate3.93 μM/min[5]
αC CI production rate1 μM/min[1]
αL1 LacI production rate1 μM/min[1]
αL2 LacIM1 production rate1 μM/min[1]
αG GFP production rate2 μM/min[1]
αLuxI LuxI production rate1 μM/min[7]
αLuxI LuxI production rate1 μM/min[7]
αLuxI LuxI production rate1 μM/min[7]
ks1 AHLi production rate0.01 1/min[2]
ρR LuxR-AHL dimerization rate0.5 1/μM3min[1]
αRFP RFP production rate1 μM/mina.
βAcA Acetaldehyde repression coefficient7.124 μM[5]
βT TetR repression coefficient0.01 μMa.
βC CI repression coefficient0.008 μM[1]
βL LacI repression coefficient0.8 μM[1]
θR LuxR-AHL repression coefficient0.01 μM[1]
γTetR TetR degradation rate0.0692 1/mina.
γC CI degradation rate0.0692 1/min[1]
γL LacI degradation rate0.0231 1/min[1]
γG GFP degradation rate0.0692 1/min[1]
γLuxI LuxI degradation rate0.0167 1/min[3]
ks0 AHLi degradation rate1 1/min[2]
kse AHLe degradation rate1 1/min[2]
γR LuxR-AHL degradation rate0.0231 1/min[1]
γRFP RFP degradation rate0.0041 1/min[4]
n1 LacI cooperativity coefficient2[1]
n2 CI cooperativity coefficient2[1]
n3 TetR cooperativity coefficient2[2]
n4 LuxR-AHL cooperativity coefficient1[1]
n5 AlcR-AcA cooperativity coefficient1.352[5]
ηDiffusion rate across the cell membrane2[2]
ηext Average diffusion rate for all cells1[2]
NNumber of cells1a.
aXylRXylR production rate95.5 uM/min[7]
n6Xylene cooperativity coefficient2[7]
γXylRXylR degradation rate0.03553 1/mina.
KXylXylene activation coefficient40 uM[7]
KXylRXylR activation coefficient1.419*10-3 uM[7]
γXylRXylR degradation rate0.03553 1/mina.

a. - assumption

Retrieved from "http://2011.igem.org/Team:ETH_Zurich/Modeling/Parameters"