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From 2011.igem.org

Contents 1 Bisphenol A 1.1 Bisphenol A and its effects on mammals 1.2 Bisphenol A degradation 1.3 Further applications of bisphenol A degrading BioBricks and enzymes 2 References

Bisphenol A

The organic compound bisphenol A (abbreviated BPA) is a key monomer in the production of polycarbonate plastics and epoxy resins. Polycarbonate is clear, heat stable and nearly shatter-proof and therefore used in a lot of common products like baby and water bottles, electronics, CDs and DVDs or eyeglass lenses. Epoxy resins are used as coatings on the inside of almost all food and beverage cans. Unpolymerized BPA monomers are leaking in small doses into aqueous solutions from BPA containing plastics leading to a daily exposure to BPA. Due to safety concerns, BPA is forbidden in the production of baby bottles in the European Union and in Canada.

Bisphenol A and its effects on mammals

endocrine disruptor, estrogenic, teratogenic, infertility etc.

Bisphenol A degradation

There exist a lot of bacteria in nature that can degrade xenobiotic substances such as phenolic compounds or endocrine disruptors. In a lot of soil samples that were taken from contaminated soil to find organisms that degrade these substances, sphingomonads were extraordinarily often isolated ([http://www.springerlink.com/content/t717l15u85507706/ Stolz, 2009]). In 2005, [http://www.springerlink.com/content/q7864l02734wg32m/ Sasaki et al.] isolated a soil bacterium from the Sphingomonas genus which is able to degrade the endocrine disruptor bisphenol A (BPA) with a unique rate and efficiency compared to other BPA degrading organisms. This strain, called Sphingomonas bisphenolicum AO1, is able to completely decompose 120 mg BPA L^-1 in about 6 hours while other strains need days of cultivation (e.g. Sphingomonas strain BP-7 isolated by [http://www.jstage.jst.go.jp/article/bbb/71/1/71_51/_article Sakai et al. (2007)]).

The full bisphenol A degradation pathway which is found in nature is shown in figure 1 (taken from KEGG database). BPA is metabolized to 4-Hydroxybenzaldehyde, 4'-Hydroxyacetophenone and 4-Hydroxybenzoate which can be used by some bacteria as carbon source. These and other metabolites of the BPA degradation pathway can be found in the supernatant of BPA containing cultivations of S. bisphenolicum AO1. They can grow on BPA as the only carbon source, too ([http://www.springerlink.com/content/q7864l02734wg32m/ Sasaki et al., 2005a]).

Bisphenol A is mainly hydroxylated into the products 1,2-Bis(4-hydroxyphenyl)-2-propanol and 2,2-Bis(4-hydroxyphenyl)-1-propanol by some kind of oxidoreductase acting with NADH or NADPH. In S. bisphenolicum AO1, a total of three genes were identified that are responsible for this BPA hydroxylation: a cytochrome P450 (CYP, bisdB), a ferredoxin (Fd, bisdA) and a ferredoxin-NAD⁺ oxidoreductase (FNR) ([http://aem.asm.org/cgi/content/abstract/71/12/8024 Sasaki et al., 2005b]). Common class I electron transport systems for bacterial cytochrome P450 consist of these three enzymes mentioned above, mostly using a ferredoxin with [2Fe-2S] iron-sulfur cluster ([http://www.sciencedirect.com/science/article/pii/S0304416506002133 Hannemann et al., 2007]). In addition, class V electron transport systems were found in bacteria, composed of a ferredoxin - cytochrome P450 fusion protein and a NAD(P)H-ferredoxin oxidoreductase. In these systems, the ferredoxin is fused to the N-terminus of the cytochrome P450 via a linker region ([http://www.sciencedirect.com/science/article/pii/S0304416506002133 Hannemann et al., 2007]). The three proteins mentioned above were isolated separately from S. bisphenolicum AO1 ([http://aem.asm.org/cgi/content/abstract/71/12/8024 Sasaki et al., 2005]), so the CYP_bisd electron transport system is a bacterial class I system.

The three gene products responsible for hydroxylating BPA act together to reduce BPA while oxidizing NADH + H⁺. The cytochrome P450 (BisdB) reduces the BPA and is oxidized during this reaction. BisdB in its oxidized status is reduced by the ferredoxin (BisdA) so it can reduce BPA again. The oxidized BisdA is reduced by a ferredoxin-NAD⁺ oxidoreductase consuming NADH + H⁺ so the BPA degradation can continue ([http://aem.asm.org/cgi/content/abstract/71/12/8024 Sasaki et al., 2005b]). The bisdAB genes from S. bisphenolicum AO1 were isolated, transformed into and expressed in E. coli and enabled this bacterium to degrade BPA, too ([http://onlinelibrary.wiley.com/doi/10.1111/j.1365-2672.2008.03843.x/full Sasaki et al., 2008]). In addition, the BisdAB proteins from S. bisphenolicum AO1 were able to degrade BPA in a cell-free system (enzyme assay) in which spinach reductase ([http://www.chem.qmul.ac.uk/iubmb/enzyme/EC1/18/1/2.html EC 1.18.1.2]) was added ([http://aem.asm.org/cgi/content/abstract/71/12/8024 Sasaki et al., 2005b]).

In 2008, the iGEM team from the University of Alberta submitted the bisdAB genes from S. bisphenolicum AO1 to the [http://partsregistry.org/Main_Page registry of standard biological parts] in the so called [http://partsregistry.org/Assembly_standard_25 Freiburg BioBrick assembly standard] (<partinfo>K123000</partinfo> and <partinfo>K123001</partinfo>). In order to degrade BPA in a cell-free system, a FNR BioBrick is also needed. As demonstrated, the BisdA and BisdB work together in a cell-free system with spinach reductase and they work intracellular in E. coli, it can be assumed that it is possible to produce all components necessary to degrade BPA in a cell free system in E. coli. To achieve this a ferredoxin-NADP⁺ oxidoreductase BioBrick, isolated from E. coli, is provided by the Bielefeld-Germany 2011 iGEM team (<partinfo>K525499</partinfo>).

The whole electron transport chain between the three enzymes involved in BPA degradation and the BioBricks needed to enable this reaction in vivo and in vitro are shown in the following figure (please have some patience, it's an animated .gif file):

Further applications of bisphenol A degrading BioBricks and enzymes

Beside the use in a biosensor, BPA degrading BioBricks could mainly be used in bioremediation approaches in BPA contaminated water or soil. If it was possible to determine and isolate the genes which are responsible for the complete degradation of BPA to substrates that can be used by bacteria as a carbon source, it would enable the bacterium carrying these BioBricks to grow on BPA. This device under the control of a BPA inducible promoter, transformed into bacteria living in a BPA contaminated environment, would be a selective advance making other selection markers such as antibiotic resistance unnecessary. For bioremediation approaches this would be an interesting advance because genes for antibiotic resistances are not released in the environment which could potentially be passed to other bacteria via bacterial conjugation. The release of antibiotic resistance genes always has the danger that these genes find a way into pathogenic bacteria strains creating multi-drug-resistant pathogens. A device which enabled bacteria to grow on BPA as the only carbon source would not present this risk in bacterial-based bioremediation approaches and therefore enhances the biosecurity of such approaches.

References

Hannemann F, Bichet A, Ewen KM, Bernhardt R (2007) Cytochrome P450 systems—biological variations of electron transport chains, [http://www.sciencedirect.com/science/article/pii/S0304416506002133 Biochimica et Biophysica Acta (BBA) - General Subjects 1770(3):330-344].

Sakai K, Yamanaka H, Moriyoshi K, Ohmoto T, Ohe T (2007) Biodegradation of Bisphenol A and Related Compounds by Sphingomonas sp. Strain BP-7 Isolated from Seawater, [http://www.jstage.jst.go.jp/article/bbb/71/1/71_51/_article Bioscience, Biotechnology, and Biochemistry 71(1):51-57].

Sasaki M, Maki J, Oshiman K, Matsumura Y, Tsuchido T (2005a) Biodegradation of bisphenol A by cells and cell lysate from Sphingomonas sp. strain AO1, [http://www.springerlink.com/content/q7864l02734wg32m/ Biodegradation 16(5):449-459].

Sasaki M, Akahira A, Oshiman K, Tsuchido T, Matsumura Y (2005b) Purification of Cytochrome P450 and Ferredoxin, Involved in Bisphenol A Degradation, from Sphingomonas sp. Strain AO1, [http://aem.asm.org/cgi/content/abstract/71/12/8024 Appl Environ Microbiol 71(12):8024-8030].

Sasaki M, Tsuchido T, Matsumura Y (2008) Molecular cloning and characterization of cytochrome P450 and ferredoxin genes involved in bisphenol A degradation in Sphingomonas bisphenolicum strain AO1, [http://onlinelibrary.wiley.com/doi/10.1111/j.1365-2672.2008.03843.x/full J Appl Microbiol 105(4):1158-1169].

Stolz A (2009) Molecular characteristics of xenobiotic-degrading sphingomonads, [http://www.springerlink.com/content/t717l15u85507706/ Appl Microbiol Biotechnol 81:793-811].