Team:ETH Zurich/Modeling/Parameters

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<td> k<sub>s0</sub> </td><td>AHL<sub>i</sub> degradation rate</td><td>1 1/min</td><td>[2]</td></tr>
<td> k<sub>s0</sub> </td><td>AHL<sub>i</sub> degradation rate</td><td>1 1/min</td><td>[2]</td></tr>
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<td> k<sub>se</sub> </td><td>AHL<sub>e</sub> degradation rate</td><td>1 1/min</td><td>[2]</td></tr>
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<td> γ<sub>R</sub> </td><td>LuxR-AHL degradation rate</td><td>0.0231 1/min</td><td>[1]</td></tr>
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<td> γ<sub>RFP</sub> </td><td>RFP degradation rate</td><td>0.0041 1/min</td><td>[4]</td></tr>
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<td> n<sub>1</sub> </td><td>LacI cooperativity coefficient</td><td>2</td><td>[1]</td></tr>
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<td> n<sub>2</sub> </td><td>CI cooperativity coefficient</td><td>2</td><td>[1]</td></tr>
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<td> n<sub>3</sub> </td><td>TetR cooperativity coefficient</td><td>2</td><td>[2]</td></tr>
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<td> n<sub>4</sub> </td><td>LuxR-AHL cooperativity coefficient</td><td>1</td><td>[1]</td></tr>
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<td> n<sub>5</sub> </td><td>AlcR-AcA cooperativity coefficient</td><td>1.352</td><td>[5]</td></tr>
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<td> η</td><td>Diffusion rate across the cell membrane</td><td>2</td><td>[2]</td></tr>
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<td> η<sub>ext</sub> </td><td>Average diffusion rate for all cells</td><td>1</td><td>[2]</td></tr>
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<td> N</td><td>Number of cells</td><td>1</td><td>a.</td></tr>
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Revision as of 14:59, 9 September 2011

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Parameter Description Value Reference
αTetR TetR production rate3.93 μM/min[5]
αC CI production rate1 μM/min[1]
αL1 LacI production rate1 μM/min[1]
αL2 LacIM1 production rate1 μM/min[1]
αG GFP production rate2 μM/min[1]
αLuxI LuxI production rate1 μM/mina.
ks1 AHLi production rate0.01 1/min[2]
ρR LuxR-AHL dimerization rate0.5 1/μM3min[1]
αRFP RFP production rate1 μM/mina.
βAcA Acetaldehyde repression coefficient7.124 μM[5]
βT TetR repression coefficient0.01 μMa.
βC CI repression coefficient0.008 μM[1]
βL LacI repression coefficient0.8 μM[1]
θR LuxR-AHL repression coefficient0.01 μM[1]
γTetR TetR degradation rate0.0692 1/mina.
γC CI degradation rate0.0692 1/min[1]
γL LacI degradation rate0.0231 1/min[1]
γG GFP degradation rate0.0692 1/min[1]
γLuxI LuxI degradation rate0.0167 1/min[3]
ks0 AHLi degradation rate1 1/min[2]
kse AHLe degradation rate1 1/min[2]
γR LuxR-AHL degradation rate0.0231 1/min[1]
γRFP RFP degradation rate0.0041 1/min[4]
n1 LacI cooperativity coefficient2[1]
n2 CI cooperativity coefficient2[1]
n3 TetR cooperativity coefficient2[2]
n4 LuxR-AHL cooperativity coefficient1[1]
n5 AlcR-AcA cooperativity coefficient1.352[5]
ηDiffusion rate across the cell membrane2[2]
ηext Average diffusion rate for all cells1[2]
NNumber of cells1a.
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