Team:ETH Zurich/Modeling/References

From 2011.igem.org

(Difference between revisions)

Revision as of 15:56, 15 September 2011

Can you feel the smoke tonight?

Modeling References

Single-Cell Model

Microfluidics Model

Combined Model

All of the previous work we included into our model is referenced here.

Single-Cell Model

	Source
[1]	[http://www.nature.com/nature/journal/v434/n7037/full/nature03461.html Subhayu Basu, Yoram Gerchman, Cynthia H. Collins, Frances H. Arnold & Ron Weiss, A synthetic multicellular system for programmed pattern formation, Nature Vol. 434, 2005]
[2]	[http://www.pnas.org/content/101/30/10955.fullJordi Garcia-Ojalvo, Michael B. Elowitz, and Steven H. Strogatz, Modeling a synthetic multicellular clock: Repressilators coupled by quorum sensing, PNAS vol. 101 no. 30, 2004]
[3]	MIT igem 2010
[4]	[http://onlinelibrary.wiley.com/doi/10.1002/cyto.a.20461/abstract;jsessionid=00173AFD03BE779CB9031A77277F1458.d01t01 Michael Halter, Alex Tona, Kiran Bhadriraju, Anne L. Plant, John T. Elliott, Automated Live Cell Imaging of Green Fluorescent Protein Degradation in Individual Fibroblasts, Cytometry Part A, Volume 71A Issue 10, 2007]
[5]	[http://www.nature.com/nbt/journal/v22/n11/full/nbt1021.html Weber W. et al, Gas-inducible transgene expression in mammalian cells and mice, Nature Biotechnology, volume 22, number 11, November 2004]
[6]	[http://onlinelibrary.wiley.com/doi/10.1111/j.1462-2920.2010.02245.x/abstract Michalis Koutinas, Ming-Chi Lam, Alexandros Kiparissides, Rafael Silva-Rocha, Miguel Godinho, Andrew G. Livingston, Efstratios N. Pistikopoulos, Victor de Lorenzo, Vitor A. P. Martins dos Santos and Athanasios Mantalaris, The regulatory logic of m-xylene biodegradation by Pseudomonas putida mt-2 exposed by dynamic modelling of the principal node Ps/Pr of the TOL plasmid, Environmental Microbiology vol. 12, Issue 6, 2010]

Microfluidics Model

	Source
[8]	[http://www.gsi-net.com/en/publications/gsi-chemical-database/single/3.html GSI Environmental Inc, Acetaldehyde, GSI Chemical Database]
[9]	[http://jb.asm.org/cgi/reprint/185/5/1485 FIX ME Diffusion in Biofilms]

Combined Model

	Source
[10]	[http://www.brenda-enzymes.org/php/result_flat.php4?ecno=1.2.1.10&Suchword=&organism[]=Escherichia+coli&show_tm=0 FIX ME BRENDA Acetaldehyde Dehydrogenase]
[11]	[http://pubs.acs.org/doi/abs/10.1021/bi00529a026 Clifford C. Shone, Herbert J. Fromm, Steady-state and pre-steady-state kinetics of coenzyme A-linked aldehyde dehydrogenase from Escherichia coli, Biochemistry, 1981, 20 (26), pp 7494–7501]

@@ Line 37: / Line 37: @@
 |style="text-align: center"|<span id="Ref6">[6]</span>
 |[http://onlinelibrary.wiley.com/doi/10.1111/j.1462-2920.2010.02245.x/abstract Michalis Koutinas, Ming-Chi Lam, Alexandros Kiparissides, Rafael Silva-Rocha, Miguel Godinho, Andrew G. Livingston, Efstratios N. Pistikopoulos, Victor de Lorenzo, Vitor A. P. Martins dos Santos and Athanasios Mantalaris,<br>'''The regulatory logic of m-xylene biodegradation by Pseudomonas putida mt-2 exposed by dynamic modelling of the principal node Ps/Pr of the TOL plasmid''',<br>Environmental Microbiology vol. 12, Issue 6, 2010]
-|-
-|style="text-align: center"|<span id="Ref7">[7]</span>
-|[http://aem.asm.org/cgi/reprint/64/3/1006 Development and Testing of a Bacterial Biosensor for Toluene-Based Environmental Contaminants]
 |}
 |}