Team:ETH Zurich/Modeling/References

From 2011.igem.org

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Revision as of 11:09, 15 September 2011

Can you feel the smoke tonight?

Modeling References

Single-Cell Model

Microfluidics Model

Combined Model

Of course, our models do not work without parameters, and in our case, there are quite a lot of them. In order to keep track of all of their respective values and units, we gathered them in a series of tables on this page.

Single-Cell Model

Irena: Tidy up the references!

[1] Subhayu Basu, Yoram Gerchman, Cynthia H. Collins, Frances H. Arnold & Ron Weiss, A synthetic multicellular system for programmed pattern formation, Nature Vol. 434, 2005 ( http://www.nature.com/nature/journal/v434/n7037/full/nature03461.html )

[2] Jordi Garcia-Ojalvo, Michael B. Elowitz, and Steven H. Strogatz, Modeling a synthetic multicellular clock: Repressilators coupled by quorum sensing, PNAS vol. 101 no. 30, 2004 ( http://www.pnas.org/content/101/30/10955.full )

[3] MIT igem 2010 ( https://2010.igem.org/Team:MIT_tmodel )

[4] Michael Halter,Alex Tona,Kiran Bhadriraju,Anne L. Plant,John T. Elliott, Automated Live Cell Imaging of Green Fluorescent Protein Degradation in Individual Fibroblasts, Cytometry Part A, Volume 71A Issue 10, 2007 (http://onlinelibrary.wiley.com/doi/10.1002/cyto.a.20461/abstract;jsessionid=00173AFD03BE779CB9031A77277F1458.d01t01 )

[5] Weber W. et al, Gas-inducible transgene expression in mammalian cells and mice, Nature Biotechnology, volume 22, number 11, November 2004 ( http://www.nature.com/nbt/journal/v22/n11/full/nbt1021.html )

[6] Michalis Koutinas et al, The regulatory logic of m-xylene biodegradation by Pseudomonas putida mt-2 exposed by dynamic modelling of the principal node Ps/Pr of the TOL plasmidemi_2245 1705 ( http://onlinelibrary.wiley.com/doi/10.111/j.1462-2920.2010.02245.x/pdf )

[7] Development and Testing of a Bacterial Biosensor for Toluene-Based Environmental Contaminants ( http://aem.asm.org/cgi/reprint/64/3/1006 )

@@ Line 19: / Line 19: @@
 <span id="Ref1">[1] Subhayu Basu, Yoram Gerchman, Cynthia H. Collins, Frances H. Arnold & Ron Weiss, '''A synthetic multicellular system for programmed pattern formation''', Nature Vol. 434, 2005 ( http://www.nature.com/nature/journal/v434/n7037/full/nature03461.html ) </span>
 [2] Jordi Garcia-Ojalvo, Michael B. Elowitz, and Steven H. Strogatz, '''Modeling a synthetic multicellular clock: Repressilators coupled by quorum sensing''', PNAS vol. 101 no. 30, 2004  ( http://www.pnas.org/content/101/30/10955.full )
 [3] MIT igem 2010 ( https://2010.igem.org/Team:MIT_tmodel )
-[4] Michael Halter,Alex Tona,Kiran Bhadriraju,Anne L. Plant,John T. Elliott,''' Automated Live Cell Imaging of Green Fluorescent Protein Degradation in Individual Fibroblasts''', Cytometry Part A, Volume 71A Issue 10, 2007 ( http://onlinelibrary.wiley.com/doi/10.1002/cyto.a.20461/abstract;jsessionid=00173AFD03BE779CB9031A77277F1458.d01t01 )
+[4] Michael Halter,Alex Tona,Kiran Bhadriraju,Anne L. Plant,John T. Elliott,''' Automated Live Cell Imaging of Green Fluorescent Protein Degradation in Individual Fibroblasts''',  Cytometry Part A, Volume 71A Issue 10, 2007 (http://onlinelibrary.wiley.com/doi/10.1002/cyto.a.20461/abstract;jsessionid=00173AFD03BE779CB9031A77277F1458.d01t01 )
 [5] Weber W. et al, Gas-inducible transgene expression in mammalian cells and mice, Nature Biotechnology, volume 22, number 11, November 2004 ( http://www.nature.com/nbt/journal/v22/n11/full/nbt1021.html )
 [6] Michalis Koutinas et al, The regulatory logic of m-xylene biodegradation by Pseudomonas putida mt-2 exposed by dynamic modelling of the principal node Ps/Pr of the TOL plasmidemi_2245 1705 ( http://onlinelibrary.wiley.com/doi/10.111/j.1462-2920.2010.02245.x/pdf )
 [7] Development and Testing of a Bacterial Biosensor for Toluene-Based Environmental Contaminants ( http://aem.asm.org/cgi/reprint/64/3/1006 )
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