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| + | |
| + | <p><a name="indice"/> </p> |
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| <div style='text-align:center'><div class="thumbinner" style="width:100%;"> | | <div style='text-align:center'><div class="thumbinner" style="width:100%;"> |
- | <a href="https://static.igem.org/mediawiki/2011/2/2f/Data_page_image2.png"><img src="https://static.igem.org/mediawiki/2011/2/2f/Data_page_image2.png" | + | <a href="https://static.igem.org/mediawiki/2011/f/fc/QS-based_control_system.png"><img src="https://static.igem.org/mediawiki/2011/f/fc/QS-based_control_system.png" |
- | class="thumbimage" width="100%"></a></div></div> </div></div> | + | class="thumbimage" width="100%"></a></div></div> </div> |
| </td> | | </td> |
| </tr> | | </tr> |
| </table> | | </table> |
| + | |
| + | <table width='100%'> |
| + | <tr> |
| + | <td> |
| + | <div><h1><span> <b>Data For Our Favorite New Parts</b> </span></h1></div> |
| + | <div style="text-align:justify"> |
| + | </div> |
| + | </td> |
| + | </tr> |
| + | <tr> |
| + | <td> |
| + | <div><h2><span> <b>BBa_K516210</b> </span></h2></div> |
| + | <div style="text-align:justify"> |
| + | </td> |
| + | </tr> |
| + | </table> |
| + | |
| <br> | | <br> |
| | | |
| + | |
| + | |
| + | <table align='center' width='100%'> |
| + | <tr> |
| + | <td> |
| + | <div style='text-align:center'><div class="thumbinner" style="width:100%;"> |
| + | <a href="https://static.igem.org/mediawiki/2011/f/f5/LuxI_animazione.gif"> |
| + | <img src="https://static.igem.org/mediawiki/2011/f/f5/LuxI_animazione.gif" |
| + | class="thumbimage" width="60%"></a></div></div> </div></div> |
| + | </td> |
| + | </tr> |
| + | </table> |
| + | <br><br> |
| + | |
| + | <p align='justify'> |
| + | <A HREF="http://partsregistry.org/wiki/index.php/Part:BBa_K516210">BBa_K516210</a> <b>(p<sub>Tet</sub>-RBS30-LuxI) - HSL synthesis device, aTc inducible.</b> <br> This is one of four systems with different RBSs (output modulation) tested to quantify the produced HSL. The results obtained by testing this part allowed the identification of important model parameters to predict the behavior of the whole CTRL+E circuit. |
| + | </p> |
| + | |
| + | <div align="right"><small><a href="#indice">^top</a></small></div><br><br> |
| + | |
| + | |
| + | |
| + | <nowiki><div class="art-postcontent"><h2><span class="mw-headline"> <b>BBa_K516334</b> </span></h2></div></nowiki> |
| + | <div style="text-align:justify"> |
| + | <br> |
| + | </div> |
| + | |
| + | |
| + | |
| + | <table align='center' width='100%'> |
| + | <tr> |
| + | <td> |
| + | <div style='text-align:center'><div class="thumbinner" style="width:100%;"> |
| + | <a href="https://static.igem.org/mediawiki/2011/d/d5/Plux_animazione.gif"> |
| + | <img src="https://static.igem.org/mediawiki/2011/d/d5/Plux_animazione.gif" |
| + | class="thumbimage" width="60%"></a></div></div> </div></div> |
| + | </td> |
| + | </tr> |
| + | </table> |
| + | <p align='justify'> |
| + | <A HREF="http://partsregistry.org/wiki/index.php/Part:BBa_K516334">BBa_K516334</a> <b>(p<sub>Lambda</sub>-RBS30-LuxR-T-p<sub>Lux</sub>-RBS34-mRFP-TT) - 3OC<sub>6</sub>-HSL biosensor, mRFP output. </b> <br> |
| + | This is one of the four biosensors (different RBSs) built and characterized. This measurement system senses the HSL concentration in the medium and responds with an RFP output. Several RBSs have been used to modulate the output range. This is a simple measurement system, used to identify important model parameters used to simulate the behavior of the whole circuit. |
| + | </p> |
| + | |
| + | <div align="right"><small><a href="#indice">^top</a></small></div><br><br> |
| + | |
| + | <nowiki><div class="art-postcontent"><h2><span class="mw-headline"> <b>BBa_K516230</b> </span></h2></div></nowiki> |
| + | <div style="text-align:justify"> |
| + | <br> |
| + | </div> |
| + | |
| + | |
| + | |
| + | <table align='center' width='100%'> |
| + | <tr> |
| + | <td> |
| + | <div style='text-align:center'><div class="thumbinner" style="width:100%;"> |
| + | <a href="https://static.igem.org/mediawiki/2011/1/1f/PTet_animazione.gif"> |
| + | <img src="https://static.igem.org/mediawiki/2011/1/1f/PTet_animazione.gif" |
| + | class="thumbimage" width="60%"></a></div></div> </div></div> |
| + | </td> |
| + | </tr> |
| + | </table> |
| + | <br><br> |
| + | <p align='justify'> |
| + | <A HREF="http://partsregistry.org/wiki/index.php/Part:BBa_K516230">BBa_K516230</a> <b>(p<sub>Tet</sub>-RBS34-mRFP-TT) - aTc inducible, mRFP output. </b><br> |
| + | This is one of the four p<sub>Tet</sub> measurement systems (different RBSs) built and characterized. This measurement system senses the aTc concentration in the medium and responds with an RFP output. Several RBSs have been used to modulate the output range. This is a simple measurement system, used to identify important model parameters used to simulate the behavior of the whole circuit. |
| + | </p> |
| + | <div align="right"><small><a href="#indice">^top</a></small></div><br><br> |
| + | |
| + | <nowiki><div class="art-postcontent"><h1><span class="mw-headline"> <b>Data For existing Parts</b> </span></h1></div></nowiki> |
| + | <div style="text-align:justify"> |
| + | </div> |
| + | <nowiki><div class="art-postcontent"><h2><span class="mw-headline"> <b>RBSs from the community collection</b> </span></h2></div></nowiki> |
| + | <div style="text-align:justify"> |
| + | </div> |
| + | |
| + | <p align='justify'> |
| + | <ol> |
| + | <ul> |
| + | <li><a href='http://partsregistry.org/Part:BBa_B0030:Experience'>Experience page of BBa_B0030</a> |
| + | </li> |
| + | <li><a href='http://partsregistry.org/Part:BBa_B0031:Experience'>Experience page of BBa_B0031</a> |
| + | </li> |
| + | <li><a href='http://partsregistry.org/Part:BBa_B0032:Experience'>Experience page of BBa_B0032</a> |
| + | </li> |
| + | <li><a href='http://partsregistry.org/Part:BBa_B0034:Experience'>Experience page of BBa_B0034</a> |
| + | </li> |
| + | </ul> |
| + | </ol> |
| + | <br> |
| + | |
| + | <b>RBSs</b><i> (based on Ron Weiss thesis)</i> were used for the fine tuning of CTRL+E. Different experimental conditions were assayed. |
| + | <br><br> |
| + | |
| + | Estimated efficiencies in pSB4C5 plasmid with -RBSx-mRFP-TT coding sequence under the control of the specified promoter: |
| + | <br><br> |
| + | |
| + | <div align="center"><table class='data' width='70%'><tr> |
| + | <td class='row'><b>RBS</b></td> |
| + | <td class='row'><b>eff<sub>p<sub>Lux</sub></sub></b></td> |
| + | <td class='row'><b>eff<sub>p<sub>Tet</sub></sub></b></td> |
| + | <td class='row'><b>eff<sub>J23101</sub></b></td> |
| + | <td class='row'><b>Declared efficiency</b></td> |
| + | </tr><tr> |
| + | <td class='row'>B0030</td><td class='row'>0.40</td><td class='row'>1.6814</td><td class='row'>2.45</td><td class='row'>0,6</td> |
| + | </tr><tr> |
| + | <td class='row'>B0031</td><td class='row'>0.01</td><td class='row'>ND</td><td class='row'>0.04</td><td class='row'>0,07</td> |
| + | </tr><tr> |
| + | <td class='row'>B0032</td><td class='row'>0.19</td><td class='row'>0.4193</td><td class='row'>0.40</td><td class='row'>0,3</td> |
| + | </tr><tr> |
| + | <td class='row'>B0034</td><td class='row'>1</td><td class='row'>1</td><td class='row'>1</td><td class='row'>1</td> |
| + | </tr></table></div> |
| + | <br><br> |
| + | Estimated efficiencies in pSB4C5 plasmid with pTet-RBSx-GeneX-TT, with GeneX=mRFP, AiiA or LuxI: |
| + | <br><br> |
| + | |
| + | <div align="center"><table class='data' width='70%'><tr> |
| + | <td class='row'><b>RBS</b></td> |
| + | <td class='row'><b>eff<sub>mRFP</sub></b></td> |
| + | <td class='row'><b>eff<sub>AiiA</sub></b></td> |
| + | <td class='row'><b>eff<sub>LuxI</sub></b></td> |
| + | <td class='row'><b>Declared efficiency</b></td> |
| + | </tr><tr> |
| + | <td class='row'>B0030</td><td class='row'>1.72</td><td class='row'>0.53</td><td class='row'>0.45</td><td class='row'>0,6</td> |
| + | </tr><tr> |
| + | <td class='row'>B0031</td><td class='row'>0.03</td><td class='row'>0.83</td><td class='row'>0.028</td><td class='row'>0,07</td> |
| + | </tr><tr> |
| + | <td class='row'>B0032</td><td class='row'>0.37</td><td class='row'>0.50</td><td class='row'>N.D.</td><td class='row'>0.3</td> |
| + | </tr><tr> |
| + | <td class='row'>B0034</td><td class='row'>1</td><td class='row'>1</td><td class='row'>1</td><td class='row'>1</td> |
| + | </tr></table></div> |
| + | |
| + | |
| + | </p> |
| + | <br><br> |
| + | <nowiki><div class="art-postcontent"><h2><span class="mw-headline"> <b>BBa_K081022</b> </span></h2></div></nowiki> |
| + | <div style="text-align:justify"> |
| + | </div> |
| + | <ol><ul><br> |
| + | <li><a href='http://partsregistry.org/Part:BBa_K081022:Experience'>Experience page of BBa_K081022</a> <b> Plambda regulated luxR generator and Plux.</b> |
| + | </li></ul></ol><br> |
| + | <p align='justify'> |
| + | This device has been characterized with several RBSs in order to modulate the output range. In this way, this device can be used to tightly control the expression of downstream encoded protein from a very weak production (using weak RBS) to a very intensive production (with strong RBSs). <br><br>The Hill's estimated parameters are reported in the table below: |
| + | <br><br> |
| + | |
| + | <table class='data' width='100%'> |
| + | <tr> |
| + | <td class="row"><b>RBS</b></td> |
| + | <td class="row"><b>α<sub>p<sub>Lux</sub></sub> [(AUr/min)/cell]</b></td> |
| + | <td class="row"><b>δ<sub>p<sub>Lux</sub></sub> [-]</b></td> |
| + | <td class="row"><b>η<sub>p<sub>Lux</sub></sub> [-]</b></td> |
| + | <td class="row"><b>k<sub>p<sub>Lux</sub></sub> [ng/ml]</b></td> |
| + | </tr> |
| + | <tr><td class="row">BBa_B0030</td> |
| + | <td class="row">438 [10]</td> |
| + | <td class="row">0.05 [>100]</td> |
| + | <td class="row">2 [47]</td> |
| + | <td class="row">1.88 [27]</td> |
| + | </tr> |
| + | <tr><td class="row">BBa_B0031</td> |
| + | <td class="row">9.8 [7]</td> |
| + | <td class="row">0.11 [57]</td> |
| + | <td class="row">1.2 [29]</td> |
| + | <td class="row">1.5 [26]</td> |
| + | </tr> |
| + | <tr><td class="row">BBa_B0032</td> |
| + | <td class="row">206 [3]</td> |
| + | <td class="row">0 [>>100]</td> |
| + | <td class="row">1.36 [10]</td> |
| + | <td class="row">1.87 [9]</td> |
| + | </tr> |
| + | <tr><td class="row">BBa_B0034</td> |
| + | <td class="row">1105 [6]</td> |
| + | <td class="row">0.02 [>100]</td> |
| + | <td class="row">1.33 [19]</td> |
| + | <td class="row">2.34 [18]</td> |
| + | </tr> |
| + | </table> |
| + | <div align="center">Data are provided as average [CV%].</div><br> |
| + | <br><br> |
| + | The operative parameters are reported in the table below: |
| + | <br><br> |
| + | |
| + | <table align='center' class='data' width='100%'> |
| + | <tr> |
| + | <td class='row'><b>RBS</b></td> |
| + | <td class='row'><b>RPU<sub>max</sub></b></td> |
| + | <td class='row'><b>RPU<sub>min</sub></b></td> |
| + | <td class='row'><b>Switch point [nM]</b></td> |
| + | <td class='row'><b>Linear boundaries [MIN; MAX] [nM]</b></td> |
| + | </tr> |
| + | <tr> |
| + | <td class='row'>B0030</td><td class='row'>4.28</td><td class='row'>0.20</td><td class='row'>1.08</td><td class='row'>[0.36; 3.27]</td> |
| + | </tr> |
| + | <tr> |
| + | <td class='row'>B0031</td><td class='row'>4.93</td><td class='row'>0.55</td><td class='row'>0.25</td><td class='row'>[0.03; 2.30]</td> |
| + | </tr> |
| + | <tr> |
| + | <td class='row'>B0032</td><td class='row'>9.49</td><td class='row'>0.02</td><td class='row'>0.47</td><td class='row'>[0.07; 3.07]</td> |
| + | </tr> |
| + | <tr> |
| + | <td class='row'>B0034</td><td class='row'>21.53</td><td class='row'>0.51</td><td class='row'>0.53</td><td class='row'>[0.08; 3.77]</td> |
| + | </tr> |
| + | </table> |
| + | |
| + | |
| + | |
| + | </p> |
| + | |
| + | <div align="right"><small><a href="#indice">^top</a></small></div><br><br> |
| + | |
| + | |
| + | |
| + | |
| + | <nowiki><div class="art-postcontent"><h2><span class="mw-headline"> <b>BBa_R0040</b> </span></h2></div></nowiki> |
| + | <div style="text-align:justify"> |
| + | <br> |
| + | </div> |
| + | |
| + | <p align='justify'> |
| + | <ol><ul> |
| + | <li><a href='http://partsregistry.org/Part:BBa_R0040:Experience'>Experience page of BBa_R0040</a> <b> TetR repressible promoter.</b> |
| + | </li></ul></ol> |
| + | <br> |
| + | pTet promoter was characterized with various RBSs and mRFP. |
| + | <br><br>The Hill's estimated parameters are reported in the table below: |
| + | <br><br> |
| + | |
| + | <table class='data' width='100%' title='parameter value'> |
| + | <tr> |
| + | <td class="row"><b>RBS</b></td> |
| + | <td class="row"><b>α<sub>p<sub>Tet</sub></sub> [(AUr/min)/cell]</b></td> |
| + | <td class="row"><b>δ<sub>p<sub>Tet</sub></sub> [-]</b></td> |
| + | <td class="row"><b>η<sub>p<sub>Tet</sub></sub> [-]</b></td> |
| + | <td class="row"><b>k<sub>p<sub>Tet</sub></sub> [nM]</b></td> |
| + | </tr> |
| + | <tr><td class="row">BBa_B0030</td> |
| + | <td class="row">230.67 [3.7]</td> |
| + | <td class="row">0.028 [91.61]</td> |
| + | <td class="row">4.61 [23.73]</td> |
| + | <td class="row">8.75 [4.16]</td> |
| + | </tr> |
| + | <tr><td class="row">BBa_B0031</td> |
| + | <td class="row">ND</td> |
| + | <td class="row">ND</td> |
| + | <td class="row">ND</td> |
| + | <td class="row">ND</td> |
| + | </tr> |
| + | <tr><td class="row">BBa_B0032</td> |
| + | <td class="row">55.77 [12]</td> |
| + | <td class="row">1.53E-11 [>>100]</td> |
| + | <td class="row">4.98 [57.62]</td> |
| + | <td class="row">7.26 [14.98]</td> |
| + | </tr> |
| + | <tr><td class="row">BBa_B0034</td> |
| + | <td class="row">120 [5.95]</td> |
| + | <td class="row">0.085 [40.6]</td> |
| + | <td class="row">24.85 [47.6]</td> |
| + | <td class="row">9 [5.43]</td> |
| + | </tr> |
| + | </table> |
| + | <div align="center">Data are provided as average [CV%]</div> |
| + | <br><br> |
| + | The operative parameters are reported in the table below: |
| + | <br><br> |
| + | |
| + | |
| + | <table align='center' class='data' width='100%'> |
| + | <tr> |
| + | <td class='row'><b>RBS</b></td> |
| + | <td class='row'><b>RPU<sub>max</sub></b></td> |
| + | <td class='row'><b>RPU<sub>min</sub></b></td> |
| + | <td class='row'><b>Switch point [ng/ml]</b></td> |
| + | <td class='row'><b>Linear boundaries [MIN; MAX] [ng/ml]</b></td> |
| + | </tr> |
| + | <tr> |
| + | <td class='row'>B0030</td><td class='row'>1.53</td><td class='row'>~0</td><td class='row'>7.95</td><td class='row'>[4.66;11.99]</td> |
| + | </tr> |
| + | <tr> |
| + | <td class='row'>B0031</td><td class='row'>ND</td><td class='row'>ND</td><td class='row'>ND</td><td class='row'>ND</td> |
| + | </tr> |
| + | <tr> |
| + | <td class='row'>B0032</td><td class='row'>3.16</td><td class='row'>~0</td><td class='row'>6.7</td><td class='row'>[4.45;10.05]</td> |
| + | </tr> |
| + | <tr> |
| + | <td class='row'>B0034</td><td class='row'>2.73</td><td class='row'>0.23</td><td class='row'>8.96</td><td class='row'>[8.27;9.71]</td> |
| + | </tr> |
| + | </table> |
| + | |
| + | |
| + | </p> |
| + | |
| + | <div align="right"><small><a href="#indice">^top</a></small></div><br><br> |
| + | |
| + | |
| + | |
| + | <nowiki><div class="art-postcontent"><h1><span class="mw-headline"> <b>Improved existing parts</b> </span></h1></div></nowiki> |
| + | <div style="text-align:justify"> |
| + | </div> |
| + | |
| + | <nowiki><div class="art-postcontent"><h2><span class="mw-headline"> <b>BBa_K516999</b> </span></h2></div></nowiki> |
| + | <div style="text-align:justify"> |
| + | </div> |
| + | <br> |
| + | <ol><ul> |
| + | <li><a href='http://partsregistry.org/Part:BBa_K516999'>BBa_K516999</a> |
| + | </li></ul></ol> |
| + | <p align='justify'> |
| + | <div style='text-align:center'><div class="thumbinner" style="width:100%;"> |
| + | <img alt="" src="https://static.igem.org/mediawiki/2011/e/ee/BBa_I13507.jpg" class="thumbimage" width="50%"></a></div></div><br><br> |
| + | This vector was designed and realized in order to facilitate the cloning of coding sequences downstream of the strong promoter p<sub>Tet</sub>. |
| + | </p> |
| + | |
| + | <div align="right"><small><a href="#indice">^top</a></small></div><br><br> |
| + | |
| + | |
| + | |
| + | |
| + | <nowiki><div class="art-postcontent"><h1><span class="mw-headline"> <b>We've Also Characterized the Following Parts</b> </span></h1></div></nowiki> |
| + | <div style="text-align:justify"> |
| + | <br> |
| + | </div> |
| + | For a detailed description of all the parts characterized, please visit the <a href='https://2011.igem.org/Team:UNIPV-Pavia/Parts/Characterized'>Parts Characterized</a> wiki page. |
| + | <div align="right"><small><a href="#indice">^top</a></small></div><br><br> |
| | | |
| </html> | | </html> |
| | | |
| {{end}} | | {{end}} |