Team:UNIPV-Pavia/Calendar/June/settimana5

From 2011.igem.org

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</p>
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<a name="June.2C_28th"></a><h2> <span class="mw-headline">June, 28th</span></h2>
<a name="June.2C_28th"></a><h2> <span class="mw-headline">June, 28th</span></h2>
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<p>Planning of the activity of the week.
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<p>
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Freezer cleaning: for each ligation, we chose the correct clone and stored it in the <i>iGEM 2010 ligations</i> box. All these cloned were gel screened and sequenced and are correct!
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<b>First time in wet lab</b>
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The colonies we chose are:
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</p>
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<p>11 LB agar plates, 35 LB agar + Amp plates and 15 LB agar + Cm 12.5 were prepared.</p>
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<p>
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<ul type="circle">
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<li><A HREF='http://partsregistry.org/wiki/index.php/Part:BBa_C0060'>BBa_C0060</A> was resuspended from iGEM 2011 kit distribution, Plate 1, well 4K in 15 &mu;l of ddH<small><sub>2</sub></small>O
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<li><A HREF='http://partsregistry.org/wiki/index.php/Part:BBa_C0061'>BBa_C0061</A> was resuspended from iGEM 2011 kit distribution, Plate 1, well 4M in 15 &mu;l of ddH<small><sub>2</sub></small>O
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<li><A HREF='http://partsregistry.org/wiki/index.php/Part:BBa_J04450'>BBa_J04450</A> was resuspended from iGEM 2011 kit distribution, Plate 1, well 5E in 15 &mu;l of ddH<small><sub>2</sub></small>O
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<li><A HREF='http://partsregistry.org/wiki/index.php/Part:BBa_K081022'>BBa_K081022</A> was resuspended from iGEM 2011 kit distribution, Plate 2, well 12N in 15 &mu;l of ddH<small><sub>2</sub></small>O
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</ul>
</p>
</p>
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<table align="center" width="30%" border="1">
 
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<tr align="center"><td><b>colony chosen</b></td>
 
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<td><b>ligation name</b></td></tr>
 
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<tr align="center"><td>I0-2</td><td>I0</td></tr>
 
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<tr align="center"><td>I1-2</td><td>I1</td></tr>
 
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<tr align="center"><td>I2-1</td><td>I2</td></tr>
 
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<tr align="center"><td>I3-1</td><td>I3</td></tr>
 
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<tr align="center"><td>I4-2</td><td>I4</td></tr>
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<p>
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<tr align="center"><td>I5-1</td><td>I5</td></tr>
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For each of them 1 &mu;l was transformed in 100 &mu;l of <i>home-made</i> TOP10 competent cells.
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<tr align="center"><td>I6-2</td><td>I6</td></tr>
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Transformants were plated on LB agar plates with the right antibiotic and incubated ON at 37°C.
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</table>
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<p>Other colonies resulted positives at the screening but were NOT sequenced and are stored in the <i>iGEM 2010 cemetery</i> box. These clones are: I1-1, I2-2, I4-1 and I6-3.
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</p>
</p>
<div align="right"><small><a href="#indice" title="">^top</a></small></div>
<div align="right"><small><a href="#indice" title="">^top</a></small></div>
<a name="June.2C_29th"></a><h2> <span class="mw-headline">June, 29th</span></h2>
<a name="June.2C_29th"></a><h2> <span class="mw-headline">June, 29th</span></h2>
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<p>Inoculum of I6, <A HREF='http://partsregistry.org/wiki/index.php/Part:BBa_J23118'>BBa_J23118</A>, <A HREF='http://partsregistry.org/wiki/index.php/Part:BBa_J23110'>BBa_J23110</A>, <A HREF='http://partsregistry.org/wiki/index.php/Part:BBa_J23114'>BBa_J23114</A>, <A HREF='http://partsregistry.org/wiki/index.php/Part:BBa_J23116'>BBa_J23116</A> from glycerol stock in 5ml LB+Amp. Cultures were grown ON at 37°C 220rpm.
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<p>
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In the morning all plates showed colonies (<A HREF='http://partsregistry.org/wiki/index.php/Part:BBa_J04450'>BBa_J04450</A> showed light red colonies); for each we picked one colony and inoculated it in 1 ml of liquid LB with the proper antibiotic (ampicillin for <A HREF='http://partsregistry.org/wiki/index.php/Part:BBa_C0060'>BBa_C0060</A>, <A HREF='http://partsregistry.org/wiki/index.php/Part:BBa_C0061'>BBa_C0061</A> and <A HREF='http://partsregistry.org/wiki/index.php/Part:BBa_K081022'>BBa_K081022</A>, kanamycin for <A HREF='http://partsregistry.org/wiki/index.php/Part:BBa_J04450'>BBa_J04450</A>). Cultures were grown at 37°C, 220 rpm.
 +
</p>
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<p>
 +
In the afternoon glycerol stocks were prepared (750 &mu;l of cultures and 250 &mu;l of 80% glycerol) and stored at -80°C except for <A HREF='http://partsregistry.org/wiki/index.php/Part:BBa_C0061'>BBa_C0061</A> which was not sufficiently grown (we let it grow until next morning); then cultures were refilled with 5 ml of liquid LB with the proper antibiotic and incubated ON at 37°C, 220 rpm.
</p>
</p>
<div align="right"><small><a href="#indice" title="">^top</a></small></div>
<div align="right"><small><a href="#indice" title="">^top</a></small></div>
<a name="June.2C_30th"></a><h2> <span class="mw-headline">June, 30th</span></h2>
<a name="June.2C_30th"></a><h2> <span class="mw-headline">June, 30th</span></h2>
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<p>PhaP-1 and PhaP-2 plates showed colonies!!
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<p>
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A colony from each plate was picked and used to infect 1ml LB+Kan. Liquid cultures of PhaP-1 and PhaP-2 were grown for 6 hours at 37°C 220 rpm and then used to prepare glycerol stocks. Remaining liquid cultures were re-filled with 5 ml LB+Kan an grown ON at 37°C 220 rpm for tomorrow MiniPrep.
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All cultures were in saturation growth phase; glycerol stock for <A HREF='http://partsregistry.org/wiki/index.php/Part:BBa_C0061'>BBa_C0061</A was prepared and stored at -80°C.
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Glycerol stocks of PhaP-1 and PhaP-2 are stored at -80°C in the <i>iGEM 2010 Registry</i> box.
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</p>
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</p><p>Ligations were heated at 65°C for 5 minutes to inactivate ligase ad then tranformed in E. coli TOP10 home made competent cells. Plates were incubated ON at 37°C (we decided to incubate plates 5 hours longer than usual, because cell growth was already slower for I6).
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<p>
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Plasmids were extracted with MiniPrep kit; purified DNA was quantified with NanoDrop Spectrophotometer:
</p>
</p>
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<div align="right"><small><a href="#indice" title="">^top</a></small></div>
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<center>
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<table border="0" width="100%" class="menu">
 
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<tr>
 
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<td align="left"><a href="/Team:UNIPV-Pavia/Calendar/June/settimana3" title="Team:UNIPV-Pavia/Calendar/June/settimana3"> Previous week</a></td>
 
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<td align="right"><a href="/Team:UNIPV-Pavia/Calendar/July/settimana1" title="Team:UNIPV-Pavia/Calendar/July/settimana1"> Next week</a></td>
 
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</tr>
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<table class="data">
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</table>
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    <tr>
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      <td class="row"><b>Plasmid</b></td>
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      <td class="row"><b>DNA (ng/&mu;l)</b></td>
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  </tr>
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  <tr>
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      <td class="row"><A HREF='http://partsregistry.org/wiki/index.php/Part:BBa_C0060'>BBa_C0060</A></td>
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      <td class="row">60.8</td>
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  </tr>
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  <tr>
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      <td class="row"><A HREF='http://partsregistry.org/wiki/index.php/Part:BBa_C0061'>BBa_C0061</A></td>
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      <td class="row">75.7</td>
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  </tr>
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  <tr>
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      <td class="row"><A HREF='http://partsregistry.org/wiki/index.php/Part:BBa_K081022'>BBa_K081022</A></td>
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      <td class="row">63.6</td>
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  </tr>
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  <tr>
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      <td class="row"><A HREF='http://partsregistry.org/wiki/index.php/Part:BBa_J04450'>BBa_J04450</A></td>
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      <td class="row">17.5</td>
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  </tr>
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</table>
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</center>
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<p>
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<A HREF='http://partsregistry.org/wiki/index.php/Part:BBa_B0030'>BBa_B0030</A>, <A HREF='http://partsregistry.org/wiki/index.php/Part:BBa_B0031'>BBa_B0031</A>, <A HREF='http://partsregistry.org/wiki/index.php/Part:BBa_B0032'>BBa_B0032</A>, <A HREF='http://partsregistry.org/wiki/index.php/Part:BBa_B0034'>BBa_B0034</A>, <A HREF='http://partsregistry.org/wiki/index.php/Part:BBa_B0015'>BBa_B0015</A>, <A HREF='http://partsregistry.org/wiki/index.php/Part:pSB4C5'>pSB4C5</A>, <A HREF='http://partsregistry.org/wiki/index.php/Part:BBa_I13501'>BBa_I13501</A>, <A HREF='http://partsregistry.org/wiki/index.php/Part:BBa_I13507'>BBa_I13507</A> were inoculated from freezer glycerol stocks and grown ON at 37°C, 220 rpm for MiniPrep.
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</p>
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<div align="right"><small><a href="#indice" title="">^top</a></small></div>
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<div>
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<span style="float:left;">
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<a href="/Team:UNIPV-Pavia/Calendar/June/settimana3" title="Previous week">
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<img src="https://static.igem.org/mediawiki/2011/0/06/Previous_week.png" alt="Previous"></a>
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<span style="float:right;">
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<a href="/Team:UNIPV-Pavia/Calendar/July/settimana1" title="Next week">
 +
<img src="https://static.igem.org/mediawiki/2011/4/44/Next_week.png" alt=""Next week"></a>
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</div>
</html>
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{{end}}
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{{endcalendar}}

Latest revision as of 17:34, 17 August 2011

UNIPV TEAM 2011

March
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April
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May
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June
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July
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August
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September
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October
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31

JUNE: WEEK 5

June, 28th

First time in wet lab

11 LB agar plates, 35 LB agar + Amp plates and 15 LB agar + Cm 12.5 were prepared.

  • BBa_C0060 was resuspended from iGEM 2011 kit distribution, Plate 1, well 4K in 15 μl of ddH2O
  • BBa_C0061 was resuspended from iGEM 2011 kit distribution, Plate 1, well 4M in 15 μl of ddH2O
  • BBa_J04450 was resuspended from iGEM 2011 kit distribution, Plate 1, well 5E in 15 μl of ddH2O
  • BBa_K081022 was resuspended from iGEM 2011 kit distribution, Plate 2, well 12N in 15 μl of ddH2O

For each of them 1 μl was transformed in 100 μl of home-made TOP10 competent cells. Transformants were plated on LB agar plates with the right antibiotic and incubated ON at 37°C.

June, 29th

In the morning all plates showed colonies (BBa_J04450 showed light red colonies); for each we picked one colony and inoculated it in 1 ml of liquid LB with the proper antibiotic (ampicillin for BBa_C0060, BBa_C0061 and BBa_K081022, kanamycin for BBa_J04450). Cultures were grown at 37°C, 220 rpm.

In the afternoon glycerol stocks were prepared (750 μl of cultures and 250 μl of 80% glycerol) and stored at -80°C except for BBa_C0061 which was not sufficiently grown (we let it grow until next morning); then cultures were refilled with 5 ml of liquid LB with the proper antibiotic and incubated ON at 37°C, 220 rpm.

June, 30th

All cultures were in saturation growth phase; glycerol stock for BBa_C0061

Plasmids were extracted with MiniPrep kit; purified DNA was quantified with NanoDrop Spectrophotometer:

Plasmid DNA (ng/μl)
BBa_C0060 60.8
BBa_C0061 75.7
BBa_K081022 63.6
BBa_J04450 17.5

BBa_B0030, BBa_B0031, BBa_B0032, BBa_B0034, BBa_B0015, pSB4C5, BBa_I13501, BBa_I13507 were inoculated from freezer glycerol stocks and grown ON at 37°C, 220 rpm for MiniPrep.