Team:UNIPV-Pavia/Project/References

From 2011.igem.org

(Difference between revisions)
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<li>Andersen JB, Sternberg C, Poulsen LK et al. (1998) <b>New unstable variants of green fluorescent protein for studies of transient gene expression in bacteria.</b> <i> Appl. Environ. Microbiol.</i> 64(6):2240-6.  
<li>Andersen JB, Sternberg C, Poulsen LK et al. (1998) <b>New unstable variants of green fluorescent protein for studies of transient gene expression in bacteria.</b> <i> Appl. Environ. Microbiol.</i> 64(6):2240-6.  
<br><br>
<br><br>
 +
<li>Anderson JC, Dueber JE, Leguia M et al. (2010)
 +
<b>BglBricks: A flexible standard for biological part assembly.</b> <i>J. Biol. Eng.</i> 20;4(1):1.
 +
<br> <br>
 +
<li>Andrianantoandro E, Basu S, Karig DK et al. (2006) <b>Synthetic biology: new engineering rules for an emerging discipline.</b>
 +
<i>Mol. Syst. Biol.</i> 2:2006.0028.
 +
<br> <br>
<li>Atkinson MR,Savageau MA, Myers JT et al. (2003) <b>Development of Genetic Circuitry Exhibiting Toggle Switch or Oscillatory Behavior in Escherichia coli. </b> <i>Cell. </i> 113(5):597-607.
<li>Atkinson MR,Savageau MA, Myers JT et al. (2003) <b>Development of Genetic Circuitry Exhibiting Toggle Switch or Oscillatory Behavior in Escherichia coli. </b> <i>Cell. </i> 113(5):597-607.
<br><br>
<br><br>
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<br> <br>
<br> <br>
<li>Canton B, Labno A, Endy D. (2008) <b>Refinement and standardization of synthetic biological parts and devices. </b> <i> Nat Biotechnol. </i>  26(7):787-93.  
<li>Canton B, Labno A, Endy D. (2008) <b>Refinement and standardization of synthetic biological parts and devices. </b> <i> Nat Biotechnol. </i>  26(7):787-93.  
 +
<br> <br>
 +
<li>Collins CH, Arnold FH, Leadbetter JR (2005)
 +
<b>Directed evolution of Vibrio fischeri LuxR for increased sensitivity to a broad spectrum of acyl-homoserine lactones.</b>
 +
<i>Mol. Microbiol.</i> 55(3):712-23.
<br> <br>
<br> <br>
<li>Cox RS 3rd, Surette MG, Elowitz MB (2007) <b> Programming gene expression with combinatorial promoters. </b> <i> Mol. Syst. Biol. </i> 3:145.  
<li>Cox RS 3rd, Surette MG, Elowitz MB (2007) <b> Programming gene expression with combinatorial promoters. </b> <i> Mol. Syst. Biol. </i> 3:145.  
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<li>De Lorimier RM, Smith JJ, Dwyer MA et al. (2002) <b>Construction of a fluorescent biosensor family. </b> <i>Protein Science. </i> 11:2655–2675.
<li>De Lorimier RM, Smith JJ, Dwyer MA et al. (2002) <b>Construction of a fluorescent biosensor family. </b> <i>Protein Science. </i> 11:2655–2675.
<br><br>
<br><br>
 +
<li>Dong YH, Gusti AR, Zhang Q et al. (2002) <b>Identification ofquorum-quenching N-acyl homoserine lactonases from Bacillus species.</b>
 +
<i>Appl. Environ. Microbiol.</i> 68(4):1754-9.
 +
<br> <br>
<li>Dong Y, Xu J, Li X et al. (2002) <b>AiiA, an enzyme that inactivates the acylhomoserine lactone quorum-sensing signal and attenuates the virulence of Erwinia carotovora. </b> <i>Applied And Environmental Microbiology. </i> 68: 1754–1759.
<li>Dong Y, Xu J, Li X et al. (2002) <b>AiiA, an enzyme that inactivates the acylhomoserine lactone quorum-sensing signal and attenuates the virulence of Erwinia carotovora. </b> <i>Applied And Environmental Microbiology. </i> 68: 1754–1759.
<br> <br>
<br> <br>
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<li>Fuqua C, Greenberg EP (2002) <b>Listening in on bacteria: acyl- homoserine lactone signalling. </b> <i>Nat. Rev. Mol. Cell Biol. </i> 3: 685–695.
<li>Fuqua C, Greenberg EP (2002) <b>Listening in on bacteria: acyl- homoserine lactone signalling. </b> <i>Nat. Rev. Mol. Cell Biol. </i> 3: 685–695.
<br><br>
<br><br>
 +
<li>Fussenegger M (2010) <b>Synthetic biology: Synchronized bacterial clocks.</b> <i>Nature.</i> 463(7279):301-2.
 +
<br> <br>
 +
<li>Garcia-Ojalvo J, Elowitz MB, Strogatz SH (2004) <b>Modeling a synthetic multicellular
 +
clock: repressilators coupled by quorum sensing.</b> <i>Proc. Natl. Acad. Sci. U.S.A. 2004</i> 101(30):10955-60.
 +
<br> <br>
 +
<li>Hanzelka BL, Stevens AM, Parsek MR et al. (1997)
 +
<b>Mutational analysis of the Vibrio fischeri LuxI polypeptide: critical regions of an autoinducer synthase.</b>
 +
<i>J. Bacteriol.</i> 179(15):4882-7.
 +
<br> <br>
 +
<li>Kelly JR, Rubin AJ, Davis JH et al. (2009) <b>Measuring the activity of BioBrick promoters using an in vivo reference standard.</b>
 +
<i>J. Biol. Eng.</i> 3:4.
 +
<br> <br>
<li>Lutz R, Bujard H (1997) <b> Independent and tight regulation of transcriptional units in Escherichia coli via the LacR/O, the TetR/O and AraC/I1-I2 regulatory elements. </b> <i>Nucleic Acids Res.</i> 25(6):1203-10.
<li>Lutz R, Bujard H (1997) <b> Independent and tight regulation of transcriptional units in Escherichia coli via the LacR/O, the TetR/O and AraC/I1-I2 regulatory elements. </b> <i>Nucleic Acids Res.</i> 25(6):1203-10.
<br><br>
<br><br>
 +
<li>McMillen D, Kopell N, Hasty J et al. (2002) <b>Synchronizing genetic relaxation oscillators by intercell signaling.</b>
 +
<i>Proc. Natl. Acad. Sci. U.S.A.</i> 99(2):679-84.
 +
<br> <br>
<li>Molina L, Constantinescu F, Micheal L et al. (2003) <b>Degradation of pathogen quorum-sensing molecules by soil bacteria: a preventive and curative biological control mechanism. </b> <i>FEMS Microbiology Ecology. </i>  45: 71-81.
<li>Molina L, Constantinescu F, Micheal L et al. (2003) <b>Degradation of pathogen quorum-sensing molecules by soil bacteria: a preventive and curative biological control mechanism. </b> <i>FEMS Microbiology Ecology. </i>  45: 71-81.
<br><br>
<br><br>
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<li>Sleight SC, Bartley BA, Lieviant JA et al. (2010) <b>Designing and engineering evolutionary robust genetic circuits. </b> <i>J. Biol. Eng. </i>4:12.
<li>Sleight SC, Bartley BA, Lieviant JA et al. (2010) <b>Designing and engineering evolutionary robust genetic circuits. </b> <i>J. Biol. Eng. </i>4:12.
<br><br>
<br><br>
 +
<li>Thomas PW, Stone EM, Costello AL et al. (2005) <b>The quorum-quenching lactonase from Bacillus thuringiensis is a metalloprotein.</b>
 +
<i>Biochemistry.</i> 44(20):7559-69.
 +
<br> <br>
 +
<li>Wang LH, Weng LX, Dong YH et al. (2004)
 +
<b>Specificity and enzyme kinetics of the quorum-quenching N-Acyl homoserine lactone lactonase (AHL-lactonase).</b>
 +
<i>J. Biol. Chem.</i>279(14):13645-51.
 +
<br> <br>
<li>Waters C.M., Bonnie L et al. (2005) <b>Quorum Sensing: Cell-to-Cell Communication in Bacteria. </b> <i>Annu. Rev. Cell Dev. Biol. </i> 21:319–46.
<li>Waters C.M., Bonnie L et al. (2005) <b>Quorum Sensing: Cell-to-Cell Communication in Bacteria. </b> <i>Annu. Rev. Cell Dev. Biol. </i> 21:319–46.
<br><br>
<br><br>
 +
<li>You L, Cox RS 3rd, Weiss R et al. (2004) <b>Programmed population control by cell-cell communication and regulated killing.</b>
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<i>Nature.</i> 428(6985):868-71.
</ol>
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Revision as of 14:26, 15 September 2011

UNIPV TEAM 2011

References


  1. Andersen JB, Sternberg C, Poulsen LK et al. (1998) New unstable variants of green fluorescent protein for studies of transient gene expression in bacteria. Appl. Environ. Microbiol. 64(6):2240-6.

  2. Anderson JC, Dueber JE, Leguia M et al. (2010) BglBricks: A flexible standard for biological part assembly. J. Biol. Eng. 20;4(1):1.

  3. Andrianantoandro E, Basu S, Karig DK et al. (2006) Synthetic biology: new engineering rules for an emerging discipline. Mol. Syst. Biol. 2:2006.0028.

  4. Atkinson MR,Savageau MA, Myers JT et al. (2003) Development of Genetic Circuitry Exhibiting Toggle Switch or Oscillatory Behavior in Escherichia coli. Cell. 113(5):597-607.

  5. Bassler BL(2002) Small Talk: Cell-to-Cell Communication in Bacteria. Cell. 109(4):421-4.

  6. Braun D, Basu S, Weiss R (2005) Parameter estimation for two synthetic gene networks: a case study. Acoustics, Speech, and Signal Processing Proceedings. IEEE International Conference. on vol.5, no., pp. v/769- v/772 Vol. 5, 18-23.

  7. Canton B, Labno A, Endy D. (2008) Refinement and standardization of synthetic biological parts and devices. Nat Biotechnol. 26(7):787-93.

  8. Collins CH, Arnold FH, Leadbetter JR (2005) Directed evolution of Vibrio fischeri LuxR for increased sensitivity to a broad spectrum of acyl-homoserine lactones. Mol. Microbiol. 55(3):712-23.

  9. Cox RS 3rd, Surette MG, Elowitz MB (2007) Programming gene expression with combinatorial promoters. Mol. Syst. Biol. 3:145.

  10. Danino T, Mondragón-Palomino O, Tsimring L et al. (2010) A synchronized quorum of genetic clocks. Nature. 463(7279):326-30.

  11. De Lorimier RM, Smith JJ, Dwyer MA et al. (2002) Construction of a fluorescent biosensor family. Protein Science. 11:2655–2675.

  12. Dong YH, Gusti AR, Zhang Q et al. (2002) Identification ofquorum-quenching N-acyl homoserine lactonases from Bacillus species. Appl. Environ. Microbiol. 68(4):1754-9.

  13. Dong Y, Xu J, Li X et al. (2002) AiiA, an enzyme that inactivates the acylhomoserine lactone quorum-sensing signal and attenuates the virulence of Erwinia carotovora. Applied And Environmental Microbiology. 68: 1754–1759.

  14. Endler L, Rodriguez N, Juty N et al. (2009) Designing and encoding models for synthetic biology. J. R. Soc. Interface. 6:S405-S417.

  15. Engebrecht J, Nealson K, Silverman M. (1983) Bacterial bioluminescence: isolation and genetic analysis of functions from Vibrio fischeri. Cell. 32:773–81.

  16. Fuqua C, Greenberg EP (2002) Listening in on bacteria: acyl- homoserine lactone signalling. Nat. Rev. Mol. Cell Biol. 3: 685–695.

  17. Fussenegger M (2010) Synthetic biology: Synchronized bacterial clocks. Nature. 463(7279):301-2.

  18. Garcia-Ojalvo J, Elowitz MB, Strogatz SH (2004) Modeling a synthetic multicellular clock: repressilators coupled by quorum sensing. Proc. Natl. Acad. Sci. U.S.A. 2004 101(30):10955-60.

  19. Hanzelka BL, Stevens AM, Parsek MR et al. (1997) Mutational analysis of the Vibrio fischeri LuxI polypeptide: critical regions of an autoinducer synthase. J. Bacteriol. 179(15):4882-7.

  20. Kelly JR, Rubin AJ, Davis JH et al. (2009) Measuring the activity of BioBrick promoters using an in vivo reference standard. J. Biol. Eng. 3:4.

  21. Lutz R, Bujard H (1997) Independent and tight regulation of transcriptional units in Escherichia coli via the LacR/O, the TetR/O and AraC/I1-I2 regulatory elements. Nucleic Acids Res. 25(6):1203-10.

  22. McMillen D, Kopell N, Hasty J et al. (2002) Synchronizing genetic relaxation oscillators by intercell signaling. Proc. Natl. Acad. Sci. U.S.A. 99(2):679-84.

  23. Molina L, Constantinescu F, Micheal L et al. (2003) Degradation of pathogen quorum-sensing molecules by soil bacteria: a preventive and curative biological control mechanism. FEMS Microbiology Ecology. 45: 71-81.

  24. Pasotti L, Quattrocelli M, Galli D et al. (2011) Multiplexing and demultiplexing logic functions for computing signal processing tasks in synthetic biology. Biotechnol. J. 6(7):784-95.

  25. Shaefer AL, Hanzelka BL, Eberhard A et al. (1996) Quorum Sensing in Vibrio fischeri: Probing Autoinducer-LuxR Interactions with Autoinducer Analogs. Journal Of Bacteriology. 178 (10): 2897-2901.

  26. Sleight SC, Bartley BA, Lieviant JA et al. (2010) Designing and engineering evolutionary robust genetic circuits. J. Biol. Eng. 4:12.

  27. Thomas PW, Stone EM, Costello AL et al. (2005) The quorum-quenching lactonase from Bacillus thuringiensis is a metalloprotein. Biochemistry. 44(20):7559-69.

  28. Wang LH, Weng LX, Dong YH et al. (2004) Specificity and enzyme kinetics of the quorum-quenching N-Acyl homoserine lactone lactonase (AHL-lactonase). J. Biol. Chem.279(14):13645-51.

  29. Waters C.M., Bonnie L et al. (2005) Quorum Sensing: Cell-to-Cell Communication in Bacteria. Annu. Rev. Cell Dev. Biol. 21:319–46.

  30. You L, Cox RS 3rd, Weiss R et al. (2004) Programmed population control by cell-cell communication and regulated killing. Nature. 428(6985):868-71.


Laboratory for Biomedical Informatics | Centre of Tissutal Engineering

University of Pavia
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