Team:UNICAMP-EMSE Brazil/Notebook/16 September 2011
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16 September 2011
Isolate and cut inserts
Objective:
- Quantification of linearized pSB1C3 vector purified from the gel (volume of ladder applied 6 uL; sample: 5 uL DNA +1 uL buffer),
- Checking digestion ( EcoRI and PstI) of samples mini-preped 09/15 and 09/16.
- Checking digestion of SoxS+HlyB+HlyD +TolC+T C1 1/ SoxS+HlyB+HlyD +TolC+T C1 2/ SoxS+HlyB+HlyD +TolC+T C1 3 (EcoRI and PstI) of samples mini-preped 09/08.
Samples:
- Gel 1:
- pSB1/ pSB 2/ pSB 3/ pSB 4/ pSB 5/ SoxS+ RBS+HlyB +RBS+HlyD+ RBS+TolC+T C1 1/ SoxS+ RBS+HlyB+ RBS+HlyD + RBS+TolC+T C1 2/ SoxS+ RBS+HlyB+ RBS+HlyD + RBS+TolC+T C1 3/ RBS+IL-12 C4/ RBS+IL-12 C5/ RBS+HlyD C4/ RBS+HlyD C5
- Gel 2:
- RBS+Tol C C10/ RBS+Tol C C11/ RBS+QseB+RBS+QseC C10/ RBS+QseB+RBS+QseC C10/ RBS+QseB+RBS+QseC C11/ RBS+QseB+RBS+QseC C12/ RBS+SoxS C10/ RBS+SoxS C11/ RBS+SoxS C12/ RBS+SoxS C13/ RBS+HlyB C10/ RBS+HlyB C11/ RBS+HlyB C12/
- Ladder:
- 100-10.000 bp (Fermentas)
- Gel Agarose concentration:
- 1,0%
- Results:
Construction | Total size (gene+vector) | Linear vector size | Gene size | Result |
---|---|---|---|---|
pSB 1 | 2070 | 2070 | ---- | Small concentration |
pSB 2 | 2070 | 2070 | ---- | Small concentration |
pSB 3 | 2070 | 2070 | ---- | Small concentration |
pSB 4 | 2070 | 2070 | ---- | Small concentration |
pSB 5 | 2070 | 2070 | ---- | Small concentration |
SoxS+ RBS+HlyB+ RBS+HlyD + RBS+TolC+T C1 1 | 8662 | 3205 | 5457 | Digestion did not work |
SoxS+ RBS+HlyB+ RBS+HlyD + RBS+TolC+T C1 2 | 8662 | 3205 | 5457 | Digestion did not work |
SoxS+ RBS+HlyB+ RBS+HlyD + RBS+TolC+T C1 3 | 8662 | 3205 | 5457 | Strange band pattern |
RBS+IL-12 C4 | 3728 | 2070 | 1658 | OK |
RBS+IL-12 C5 | 3728 | 2070 | 1658 | Probably digestion did not work |
RBS+HlyD C4 | 3566 | 2070 | 1496 | Strange band pattern. Can it be HlyB instead of HlyD? |
RBS+HlyD C5 | 3566 | 2070 | 1496 | No fragment visible band |
RBS+Tol C C10 | 3650 | 2070 | 1580 | Strange band pattern |
RBS+Tol C C11 | 3650 | 2070 | 1580 | Strange band pattern |
RBS+QseB+RBS+QseC C10 | 4156 | 2070 | 2086 | Has two bands that matches correct sizes, but an extra strange band |
RBS+QseB+RBS+QseC C11 | 4156 | 2070 | 2086 | Strange band |
RBS+QseB+RBS+QseC C12 | 4156 | 2070 | 2086 | Has two bands that matches correct sizes, but an extra strange band |
RBS+SoxS C10 | 2173 | 2070 | 103 | Seems little bigger than expected |
RBS+SoxS C11 | 2173 | 2070 | 103 | Seems little bigger than expected |
RBS+SoxS C12 | 2173 | 2070 | 103 | Seems little bigger than expected |
RBS+SoxS C13 | 2173 | 2070 | 103 | Seems little bigger than expected |
RBS+HlyB C10 | 4253 | 2070 | 2183 | Non match band size. Where´s the vector band? |
RBS+HlyB C11 | 4253 | 2070 | 2183 | Non match band pattern. Cain it be HlyD? |
RBS+HlyB C12 | 4253 | 2070 | 2183 | Non match band size. Where´s the vector band? |