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Team:Imperial College London/Reporters
From 2011.igem.org
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<h1>Reporters</h1> | <h1>Reporters</h1> | ||
<p>Fluorescent reporters are an important tool in molecular biology, as they are frequently used to label various intracellular processes. In synthetic biology, fluorescent reporters are often used as the output of a genetic circuit, for example to signal the detection of a chemical.</p> | <p>Fluorescent reporters are an important tool in molecular biology, as they are frequently used to label various intracellular processes. In synthetic biology, fluorescent reporters are often used as the output of a genetic circuit, for example to signal the detection of a chemical.</p> | ||
| - | <p>As part of our iGEM project, we implemented a new fluorescent reporter, Dendra 2. In addition, we introduced a new coding sequence for superfolder GFP that is codon optimised for E.coli. | + | <p>As part of our iGEM project, we implemented a new fluorescent reporter, Dendra 2. In addition, we introduced a new coding sequence for superfolder GFP that is codon optimised for E.coli.</p> |
| + | <p>To further characterise these parts, we have conducted a thermostability assay to determine the temperature at which these proteins denature and cease to fluoresce. This was done by first expressing the fluorescent proteins in E.coli and then growing them in large batch cultures. The cultures were centrifuged, and then the resulting pellet was resuspended in Tris lysis buffer. A sonicator was used to lyse the cells, and then the resulting mixture was centrifuged again to remove cell debris. The supernatants containing the fluorescent proteins were then kept at 4°C to preserve them, since freezing would result in protein degradation.</p> | ||
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<h3>Dendra 2</h3> | <h3>Dendra 2</h3> | ||
Revision as of 23:35, 15 September 2011
Reporters
Fluorescent reporters are an important tool in molecular biology, as they are frequently used to label various intracellular processes. In synthetic biology, fluorescent reporters are often used as the output of a genetic circuit, for example to signal the detection of a chemical.
As part of our iGEM project, we implemented a new fluorescent reporter, Dendra 2. In addition, we introduced a new coding sequence for superfolder GFP that is codon optimised for E.coli.
To further characterise these parts, we have conducted a thermostability assay to determine the temperature at which these proteins denature and cease to fluoresce. This was done by first expressing the fluorescent proteins in E.coli and then growing them in large batch cultures. The cultures were centrifuged, and then the resulting pellet was resuspended in Tris lysis buffer. A sonicator was used to lyse the cells, and then the resulting mixture was centrifuged again to remove cell debris. The supernatants containing the fluorescent proteins were then kept at 4°C to preserve them, since freezing would result in protein degradation.
<Dendra 2
Dendra 2 is a green fluorescent protein that can be irreversibly single-photon photoconverted into a red fluorescent protein.
Thermostability
Superfolder GFP
This is a variant of GFP that has been engineered to be faster folding so that it can be used for tagging proteins more efficiently. The variant that we're submitting to the registry has been codon optimised for E.coli.
