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Team:Edinburgh/Links
From 2011.igem.org
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| - | Useful information/tools can be found on the following pages: | + | <p class="h1">Links</p> |
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| + | Useful information/tools, many of which we used regularly, can be found on the following pages: | ||
===Biology methods=== | ===Biology methods=== | ||
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===Genomics=== | ===Genomics=== | ||
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* [http://blast.ncbi.nlm.nih.gov/Blast.cgi BLAST: Basic Local Alignment Search Tool] | * [http://blast.ncbi.nlm.nih.gov/Blast.cgi BLAST: Basic Local Alignment Search Tool] | ||
| - | * [http:// | + | * [http://en.wikipedia.org/wiki/DNA_codon_table Codon Table] |
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* [http://www.ebi.ac.uk/ EMBL] | * [http://www.ebi.ac.uk/ EMBL] | ||
* [http://www.ncbi.nlm.nih.gov/sites/gquery Entrez] | * [http://www.ncbi.nlm.nih.gov/sites/gquery Entrez] | ||
| + | * [http://genepool.bio.ed.ac.uk/sanger/Sanger_troubleshooting_guide_v1.pdf GenePool: Sanger Sequencing Troubleshooting] | ||
| + | * [http://tools.neb.com/NEBcutter2/index.php NEBcutter] (finds restriction sites; also finds ORFs if they start with M) | ||
| + | * [http://www.ebi.ac.uk/Tools/psa/ Needle] (and other pairwise alignment tools) | ||
| + | * [http://www.bioinformatics.org/sms/rev_comp.html Reverse Complement] | ||
| + | * [http://www.cbs.dtu.dk/services/SignalP/ SignalP] | ||
* [http://www.straininfo.net/ StrainInfo] | * [http://www.straininfo.net/ StrainInfo] | ||
| + | * [http://www.ebi.ac.uk/Tools/emboss/transeq/ Transeq] (nucleotide to protein conceptual translation) | ||
| + | * [http://www.uniprot.org/ UniProt] | ||
===iGEM=== | ===iGEM=== | ||
Latest revision as of 20:20, 12 January 2012
Links
Useful information/tools, many of which we used regularly, can be found on the following pages:
Contents |
Biology methods
- [http://www.openwetware.org/wiki/French_Lab Open Wetware: French Lab protocols]
- [http://www.openwetware.org/wiki/Cfrench:bbprimerdesign Primer Design]
- [http://jbei-exwebapp.lbl.gov/j5/j5manual/pages/1.html J5: overview of automated DNA assembly]
- [http://www.nfstc.org/pdi/Subject04/pdi_s04_m01_02.htm Primer Design] (for forensics, but probably good advice for us too)
Genomics
- [http://blast.ncbi.nlm.nih.gov/Blast.cgi BLAST: Basic Local Alignment Search Tool]
- [http://en.wikipedia.org/wiki/DNA_codon_table Codon Table]
- [http://www.ebi.ac.uk/ EMBL]
- [http://www.ncbi.nlm.nih.gov/sites/gquery Entrez]
- [http://genepool.bio.ed.ac.uk/sanger/Sanger_troubleshooting_guide_v1.pdf GenePool: Sanger Sequencing Troubleshooting]
- [http://tools.neb.com/NEBcutter2/index.php NEBcutter] (finds restriction sites; also finds ORFs if they start with M)
- [http://www.ebi.ac.uk/Tools/psa/ Needle] (and other pairwise alignment tools)
- [http://www.bioinformatics.org/sms/rev_comp.html Reverse Complement]
- [http://www.cbs.dtu.dk/services/SignalP/ SignalP]
- [http://www.straininfo.net/ StrainInfo]
- [http://www.ebi.ac.uk/Tools/emboss/transeq/ Transeq] (nucleotide to protein conceptual translation)
- [http://www.uniprot.org/ UniProt]
iGEM
- iGEM
- [http://partsregistry.org/Main_Page Parts Registry]
- [http://partsregistry.org/Help Help]
- [http://partsregistry.org/Help:BioBrick_Prefix_and_Suffix BioBrick prefix and suffix]
- [http://dspace.mit.edu/bitstream/handle/1721.1/45139/BBFRFC12.txt?sequence=1 RFC 12]
- [http://dspace.mit.edu/bitstream/handle/1721.1/32535/PhillipsSilverFusion.pdf?sequence=1 RFC 23]
- [http://www.wired.com/wired/archive/13.01/mit.html Life Reinvented] (article on the origins of iGEM)
Software
- [http://kappalanguage.org/ The Kappa Biological Modeling Language]
- [http://www.demonsoft.org/SpatialKappa/ Spatial Kappa]
- MATLAB intro
- [http://biologylabs.utah.edu/jorgensen/wayned/ape/ ApE Plasmid Editor]
- [http://www.geospiza.com/Products/finchtv.shtml FinchTV Chromatogram Viewer]
Misc
- The old Wiki (do not use)
- [http://www.w3schools.com/css/default.asp CSS guide]
