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Team:Paris Bettencourt/Modeling
From 2011.igem.org
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<td><a href="https://2011.igem.org/Team:Paris_Bettencourt/Hypothesis">Our Hypotheses</a> Because of the specificities of our project, we had to adapt the "classic" model to better represent our current situation. On top of that we made and justified a few other hypotheses detailed in this section. | <td><a href="https://2011.igem.org/Team:Paris_Bettencourt/Hypothesis">Our Hypotheses</a> Because of the specificities of our project, we had to adapt the "classic" model to better represent our current situation. On top of that we made and justified a few other hypotheses detailed in this section. | ||
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<td><a href="https://2011.igem.org/Team:Paris_Bettencourt/Modeling/Designs">Modeling our designs</a> Models predicting the behaviour of our designs are detailled in this section. | <td><a href="https://2011.igem.org/Team:Paris_Bettencourt/Modeling/Designs">Modeling our designs</a> Models predicting the behaviour of our designs are detailled in this section. | ||
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<td><a href="https://2011.igem.org/Team:Paris_Bettencourt/Modeling/Diffusion">Passive diffusion in nanotubes</a> We investigate here the hypothesis of passive diffusion through nanotubes. | <td><a href="https://2011.igem.org/Team:Paris_Bettencourt/Modeling/Diffusion">Passive diffusion in nanotubes</a> We investigate here the hypothesis of passive diffusion through nanotubes. | ||
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<td><a href="https://2011.igem.org/Team:Paris_Bettencourt/Modeling/Assisted_diffusion">Assisted diffusion</a> We propose here a model explaining how diffusion through nanotubes could be "assisted" by the tension differential between cell walls. | <td><a href="https://2011.igem.org/Team:Paris_Bettencourt/Modeling/Assisted_diffusion">Assisted diffusion</a> We propose here a model explaining how diffusion through nanotubes could be "assisted" by the tension differential between cell walls. | ||
Revision as of 14:40, 30 August 2011
Modeling
Predicting how our systems will react during experiments required precise modeling. Like most synthetic biology projects, we had to create simulations of our gene regulation networks using Matlab. We also had to think carefully about diffusion of very few molecule in a cell and to propose models of diffusion (wether it is passive, active or "semi-active") in nanotubes to correcly model our systems. Those simulations were done using Matlab, Maya and a lot of reflexion.
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What is modeling in synthetic biology? You can finde here an introduction to our methods and the general idea behind most models in gene network. |
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Our Hypotheses Because of the specificities of our project, we had to adapt the "classic" model to better represent our current situation. On top of that we made and justified a few other hypotheses detailed in this section. |
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Modeling our designs Models predicting the behaviour of our designs are detailled in this section. |
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Passive diffusion in nanotubes We investigate here the hypothesis of passive diffusion through nanotubes. |
| (Images are just here as an example, not definitive)
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Assisted diffusion We propose here a model explaining how diffusion through nanotubes could be "assisted" by the tension differential between cell walls. |
