Team:Johns Hopkins/Project/PromUTR

From 2011.igem.org

(Difference between revisions)
(Promoters)
Line 25: Line 25:
!width="100"|ARD1p
!width="100"|ARD1p
!width="100"|[http://partsregistry.org/wiki/index.php?title=Part:BBa_K530005 BAP2p]
!width="100"|[http://partsregistry.org/wiki/index.php?title=Part:BBa_K530005 BAP2p]
-
!width="100"|FCY2
+
!width="100"|[http://partsregistry.org/wiki/index.php?title=Part:BBa_K530015 FCY2p]
-
!width="100"|Gal 1/10p
+
!width="100"|[http://partsregistry.org/wiki/index.php?title=Part:BBa_K530018 Gal 1/10p]
-
!width="100"|HHO1p
+
!width="100"|[http://partsregistry.org/wiki/index.php?title=Part:BBa_K530010 HHO1p]
|-
|-
|'''[http://partsregistry.org/wiki/index.php?title=Part:BBa_K530003 KRE9p]''' ||'''[http://partsregistry.org/wiki/index.php?title=Part:BBa_K530007 PRY1p]''' ||'''RPL8Ap''' ||'''RPL24Ap''' || '''[http://partsregistry.org/wiki/index.php?title=Part:BBa_K530009 RPS2p]'''
|'''[http://partsregistry.org/wiki/index.php?title=Part:BBa_K530003 KRE9p]''' ||'''[http://partsregistry.org/wiki/index.php?title=Part:BBa_K530007 PRY1p]''' ||'''RPL8Ap''' ||'''RPL24Ap''' || '''[http://partsregistry.org/wiki/index.php?title=Part:BBa_K530009 RPS2p]'''
|-
|-
-
|'''RPS8Bp''' || '''[http://partsregistry.org/wiki/index.php?title=Part:BBa_K530004 STM1p]''' || '''[http://partsregistry.org/wiki/index.php?title=Part:BBa_K530008 TDH3p]''' ||  
+
|'''[http://partsregistry.org/wiki/index.php?title=Part:BBa_K530016 RPS8Bp]''' || '''[http://partsregistry.org/wiki/index.php?title=Part:BBa_K530004 STM1p]''' || '''[http://partsregistry.org/wiki/index.php?title=Part:BBa_K530008 TDH3p]''' ||  
|}
|}
Line 37: Line 37:
Similarly, the following UTRs, or termination sequences have been provided for our work:
Similarly, the following UTRs, or termination sequences have been provided for our work:
{| style="margin-left: 70px;"  
{| style="margin-left: 70px;"  
-
!width="100"|ARD1utr
+
!width="100"|[http://partsregistry.org/wiki/index.php?title=Part:BBa_K530020 ARD1utr]
!width="100"|[http://partsregistry.org/wiki/index.php?title=Part:BBa_K530006 BAP2utr]
!width="100"|[http://partsregistry.org/wiki/index.php?title=Part:BBa_K530006 BAP2utr]
-
!width="100"|FCY2utr
+
!width="100"|[http://partsregistry.org/wiki/index.php?title=Part:BBa_K530017 FCY2utr]
-
!width="100"|HHo1utr
+
!width="100"|[http://partsregistry.org/wiki/index.php?title=Part:BBa_K530019 HHo1utr]
-
!width="100"|KRE9utr
+
!width="100"|[http://partsregistry.org/wiki/index.php?title=Part:BBa_K530014 KRE9utr]
|-
|-
-
|'''PRY1utr''' ||'''RPL8Autr''' ||'''RPL24Autr''' ||'''RPL24Autr''' || '''RPS2utr'''
+
|'''[http://partsregistry.org/wiki/index.php?title=Part:BBa_K530013 PRY1utr]''' ||'''[RPL8Autr http://partsregistry.org/wiki/index.php?title=Part:BBa_K530011]''' ||'''[http://partsregistry.org/wiki/index.php?title=Part:BBa_K530021 RPL24Autr]''' ||'''RPL24Autr''' || '''RPS2utr'''
|-
|-
|'''RPS8Butr''' || '''STM1utr''' || '''TDH3utr''' ||  
|'''RPS8Butr''' || '''STM1utr''' || '''TDH3utr''' ||  

Revision as of 18:46, 25 September 2011

VitaYeast - Johns Hopkins University, iGEM 2011

Promoters and UTRs

As we began our work with Saccharomyces cerevisiae, it came to our attention that the database is deficient in genes for this organism. This deficiency is due in part to the fact that E. coli genes are widespread through the database, whereas yeast remains a largely untapped area. In order to address this problem and facilitate the use of yeast in synthetic biology we have decided to provide the basic parts required for gene use and assembly. Dr. Jef Boeke has provided some basic parts including promoters and termination sequences of varying strengths. This will allow future teams the ease of use of premade biobricked sequences to use with their genes.

Promoters

Yeast promoter sequences of varying strength have been provided for our work. The following are the available promoters:

ARD1p BAP2p FCY2p Gal 1/10p HHO1p
KRE9p PRY1p RPL8Ap RPL24Ap RPS2p
RPS8Bp STM1p TDH3p
UTRs

Similarly, the following UTRs, or termination sequences have been provided for our work:

ARD1utr BAP2utr FCY2utr HHo1utr KRE9utr
PRY1utr [RPL8Autr http://partsregistry.org/wiki/index.php?title=Part:BBa_K530011] RPL24Autr RPL24Autr RPS2utr
RPS8Butr STM1utr TDH3utr