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Team:ArtScienceBangalore/Notebook
From 2011.igem.org
Notebook
Building our own BioLab
The thing that sets us apart from most IGEM teams is our ultra-tight budget and our desperate attempts at making our own lab equipment. In Hindi, this is called [http://en.wikipedia.org/wiki/Jugaad "Jugaad"]. Apart from the pleasure of having your own incubator which is pink in color, these exercises help us understand the science better. In these images, we have our microscopes, laminar air flow, a centrifuge and an incubator. We built our own lab by constructing a geodesic 10 feet dome which will house the entire lab and will function as the future ArtScienceBLR headquarters / community BIOlab.
Experiments at NCBS
We worked in the labs at NCBS, under the watchful eye of Navneet Rai.
The BioGeographer's toolkit
Every BioGeographer needs a toolkit to collect and store their samples.
The First Prototype:
Slab to store Epindorf tubes after soil sampling:
The Epindorf Bag
Soil Sampler ..for stylish soil extraction
The Post-Natural BioGeographer
Sidharta poses with his Soil Sampling toolkit
Outreach with (skeptical) Friends
Watching some David Cronenberg
[http://en.wikipedia.org/wiki/David_Cronenberg David Cronenberg's] strange explorations on technology and it's effects on humans are a good place to start for the budding synthetic biologist.
"Shivers (a movie directed by David Cronenberg) is about a doctor’s attempts to bring out the inner sexual animal in man, using a parasite. He fooled his co-workers, and sponsors, into thinking that he was working on creating an alternative to organ transplant, by using parasites. The doctor was unable to accurately predict what the modified parasite would do. This lead to the parasite spreading from his teenaged mistress to quite a few other residents of a “sterile” high-end apartment block, and spreading uncontrollable sexual desire. This movie, to me, highlighted the unpredictable nature of the effects, the consequences of any modifications that we make in any organisms. It also highlights the unpredictability of the behaviour of the organisms. The behaviour of the modified organism in the laboratory is not adequate enough to predict its behaviour in the outside (real) world. The parasites modified an entire society and, in a manner, the entire purpose of a community. How will this sudden change in the very purpose of their lives affect the community? Will it have adverse effects on their functioning? What about their environment? How will the delicate balance of nature be affected? Would it be affected? Who are we to change the very nature of the place we call home so drastically?"
-[http://hackteria.org/wiki/index.php/Prakrithy_Pradeep Prakrithy's diary]
"In the afternoon we watched a movie called Shivers. I cant say it is going to be one of my favorite movies. Though the movie had a pretty interesting story to it, the gory details put me off. One thing i liked a lot about the movie though was that even though it was a 1976 movie, The idea of developing science to such an extent was incredible. The movie shows how a scientist thought of replacing organs in the bodies with parasites. Parasites, which can take over the same function as that organ in the human body. But it didn't work out as he planned and hence the parasites took over the human body and lead it to nasty sexual desires. Aaron and his group apparently had worked on the same concept as the movie for one of their projects last year. They changed the mood patterns in ants and recorded how their entire life style. Same way The scientist in the movie had introduced the parasites into the humans lives. But Madhul raised a very interesting question today. She asked if changing these life style patterns in living things is a good thing or a bad thing. Because in the movie, it lead to mayhem but probably in the ant colony it lead to a good things cause there was no discrimination between the soldiers or the worker ants,or the worker ants and the queen. Which goes back to the question asked on day 4. Whether we have the right to modify lives of living things. This got me thinking a lot. And modifying life can have many different perceptions. I think there should be some laws on how we can modify life patterns in living organisms such that their lives aren't harmed or are caused discomfort"
-[http://hackteria.org/wiki/index.php/Achala_Basu Achala's diary]
We also watched The Fly...and here are some reactions!
Reading [http://www.stanford.edu/dept/HPS/Haraway/CyborgManifesto.html Donna Haraway's cyborg Manifesto](Yawn)
Donna Haraway's Cyborg Manifesto coaxes the reader to reconsider stereotypes, assumptions and the true meaning of titular constructs like gender, divinity and organic.The writing style seemed poetic at first but I grew tiresome of her choice of words quickly. Although the manifesto made a few interesting points it was so overladen with unnecessarily esoteric terms that the read was more tedious than interesting. I spent far more time looking up Greek and Latin words than reading the actual article.
-Bisu's Diary
Some Early Speculative ideas:
Spicy Bacteria-by Prakrithy
Biswajit's Insulin Bacteria
A collection of ideas after a "Soil Mapping Brainstorming session"
Urban Bacterial Theater
Desire Line Drawing Capture the paths of people on a park using Stop Motion Sample along those paths
Hospital Waste Samples Human Parts thrown out back? Nurse Costume
Family History
Super Hero Saving the Day Radiation / Mutation i.e. Spiderman, Incredible Hulk
Disaster Mapping Fukishima, Chernobyl, Bhopal etc... E-Waste Sites
Retracing a walk Recursion / Remembering Gandhi Sea March Silk Road Ghengis Kahn
Topography / BioTrekking
Farmer / Drought / IR Mapping
Costume = Bullet Belt
Blood Soil Conflict Areas / Borders Israel / Palestine Kashmir Tropic of Cancer - Bhuj
Tea Plantation Basket Costume for Collecting samples Terroir
Ant Hills / Termite Mounds Costume = A Bacteria Zoologist / Arcehologist
Paranormal Activity Soil Ghost Hunters
Soul in the Soil Graveyard / Tower of Silence
Sending Soil on a Journey Put a potted plant on a train and take samples at each end
Soil Sadu Ask for soil samples instead of alms Wiseman / karma
Culture Soil Compare different cultures / paint clothes
National PCR Compare national data (GDP, GINI) with PCR data
Sunrise Sampling Grab samples as the sun comes up across the world
Airplane dust Collect samples on the plane
Sea beds Since it is no ones land. International waters
Oil Refinery / Shipping Ports Look for oil contamination / Map the flow of energy
Shadows & Soils Micro-climates on ONE site based on where sun hits or doesn't
Zoology of the Future
Old vs New Old vs. New Airport in BLR Oldest Building in BLR and site that is being built on now Schools vs. Old Age Homes
Royal Soil Difference between "holy" soil & normal soil
Neighborhood Soil
Cultural Soils
Walking / Imagery of Feet
Lake / Garbage Disposal
Evolution Mapping the evolution of borders/city limits Soil samples along different border
Trace a day Follow a cow/street dog/goat across the city, and take soil samples along the path say, every 30 mins. Follow people from "contrasting" walks of life
