Team:Arizona State/Project/Software

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CRISPR Studio


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CRISPR information panel of the CRISPRstudio

We have developed a tool to assist in the development of synthetic CRISPR systems.

  • Pick spacers from a source sequence, based on homology with the target genome, hairpinning potential, restriction sites, and known PAMs.
  • Output arrays with various formats based on generated spacers.
  • Display and gather CRISPR information using a database cultivated from several sources.

Downloads (coming soon)


  • Python source:
  • Dependencies: BioPython, NumPy, WxPython, BLAST+
  • Executable:

Sources


  • [http://crispr.u-psud.fr/crispr/ CrisprDB]
  • [http://cmr.jcvi.org/tigr-scripts/CMR/CmrHomePage.cgi JCVI CMR]
  • [http://crispi.genouest.org/ CRISPI]
  • NCBI