Team:Sevilla/Software/Ubbit

Ubbit.orgThe ubbit repository is a web database developed to make easy the implementation of the Ubbit standard. The main functionalities of the database are:

• A modelling language based on P systems which allows modular and parsimonious multi-cellular model development including geometric information.
• A multi-compartmental stochastic simulator based on Gillespie’s Stochastic Simulation Algorithm for multi-cellular systems.
• Formal model analysis using the stochastic model checkers PRISM and MC2 for the study of temporal and spatial model properties.
• Structural and parameter model optimisation using evolutionary algorithms to automatically generate models whose dynamics match specified targets.

Ubbit.org