"
Team:Arizona State/Templates/cas table
From 2011.igem.org
(Difference between revisions)
Ethan ward (Talk | contribs) |
Ethan ward (Talk | contribs) |
||
| Line 45: | Line 45: | ||
| csa1 || || y || y || y || y || || || || y || || || || || || {{:Team:Arizona State/Templates/tigr|01896}} || || || | | csa1 || || y || y || y || y || || || || y || || || || || || {{:Team:Arizona State/Templates/tigr|01896}} || || || | ||
|- | |- | ||
| - | | rowspan=" | + | | rowspan="6"| cas5 || cas5d || rowspan="6"| casD || y || y || y || || y || || || || || || || || || rowspan="6"| {{:Team:Arizona State/Templates/cog|1688}} || {{:Team:Arizona State/Templates/tigr|01876}} || y || y || rowspan="6"| N-terminal domain {{:Team:Arizona State/Templates/ref|13}}, crRNA processing {{:Team:Arizona State/Templates/ref|62}} || cas5 |
|- | |- | ||
| cas5e || y || y || y || || y || || || || || || || || || {{:Team:Arizona State/Templates/tigr|01868}} || y || y || cas5 | | cas5e || y || y || y || || y || || || || || || || || || {{:Team:Arizona State/Templates/tigr|01868}} || y || y || cas5 | ||
| Line 56: | Line 56: | ||
|- | |- | ||
| csa5a || y || y || y || || y || || || || || || || || || {{:Team:Arizona State/Templates/tigr|01874}} || y || y || cas5 | | csa5a || y || y || y || || y || || || || || || || || || {{:Team:Arizona State/Templates/tigr|01874}} || y || y || cas5 | ||
| - | |||
| - | |||
|- | |- | ||
| rowspan="2"| cas6 || cas6 || || y || y || || y || || || || || y || y || || || || rowspan="2"| {{:Team:Arizona State/Templates/cog|1583}}, {{:Team:Arizona State/Templates/cog|5551}} || {{:Team:Arizona State/Templates/tigr|01877}} || y || || rowspan="4"| crRNA processing {{:Team:Arizona State/Templates/ref|62}} || cas6 | | rowspan="2"| cas6 || cas6 || || y || y || || y || || || || || y || y || || || || rowspan="2"| {{:Team:Arizona State/Templates/cog|1583}}, {{:Team:Arizona State/Templates/cog|5551}} || {{:Team:Arizona State/Templates/tigr|01877}} || y || || rowspan="4"| crRNA processing {{:Team:Arizona State/Templates/ref|62}} || cas6 | ||
Revision as of 21:23, 10 August 2011
| Name [62] | Name [13] | Name[23] | I-A | I-B | I-C | I-D | I-E | I-F | II-A | II-B | III-A | III-B | I-U | III-U | U | COG | TIGR | Ramp [62] | cascade-like complex [62] | putative function | grouping [71] |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| cas_HTH | |||||||||||||||||||||
| cas1 | cas1 | cas1 | y | y | y | y | y | y | y | y | y | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1518 1518] | [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR00287 00287] | Nuclease [72] | ||||||
| cas10 | cmr2 | y | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1353 1353] | [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR02577 02577] | y | Polymerase [72] | ||||||||||||||
| csm1 | y | y | [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR02578 02578] | y | |||||||||||||||||
| csx11 | y | y | y | ||||||||||||||||||
| cas10d | csc3 | y | y | ||||||||||||||||||
| cas2 | cas2 | cas2 | y | y | y | y | y | y | y | y | y | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1343 1343], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG3512 3512] | [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01573 01573] | |||||||
| cas3' | cas3 | cas3 | y | y | y | y | y | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1203 1203] | [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01587 01587] | Helicase, nuclease [13] | ||||||||||
| cas3 | y | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG2254 2254] | ||||||||||||||||||
| cas4 | cas4 | y | y | y | y | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1468 1468] | [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR00372 00372] | RecB exonuclease [72][73] | ||||||||||||
| csa1 | y | y | y | y | y | [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01896 01896] | |||||||||||||||
| cas5 | cas5d | casD | y | y | y | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1688 1688] | [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01876 01876] | y | y | N-terminal domain [13], crRNA processing [62] | cas5 | |||||||||
| cas5e | y | y | y | y | [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01868 01868] | y | y | cas5 | |||||||||||||
| cas5h | y | y | y | y | [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR02592 02592] | y | y | cas5 | |||||||||||||
| cas5t | y | y | y | y | [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01895 01895] | y | y | cas5 | |||||||||||||
| cmx5 | y | y | y | y | y | y | cas5 | ||||||||||||||
| csa5a | y | y | y | y | [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01874 01874] | y | y | cas5 | |||||||||||||
| cas6 | cas6 | y | y | y | y | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1583 1583], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG5551 5551] | [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01877 01877] | y | crRNA processing [62] | cas6 | ||||||||||
| cmx6 | y | y | y | y | y | y | cas6 | ||||||||||||||
| cas6e | cse3 | casE | y | [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01907 01907] | y | cas6 | |||||||||||||||
| cas6f | csy4 | y | [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR02563 02563] | y | cas6 | ||||||||||||||||
| cas7 | csa2 | casC | y | y | y | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1857 1857], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG3649 3649] | [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR02583 02583] | y | y | Regulation [13] | cas7 | |||||||||
| csd2 | y | y | y | y | [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR02589 02589] | y | y | cas7 | |||||||||||||
| cse4 | y | y | y | y | [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01869 01869] | y | y | cas7 | |||||||||||||
| csh2 | y | y | y | y | [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR02590 02590] | y | y | cas7 | |||||||||||||
| cst2 | y | y | y | y | [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR02585 02585] | y | y | cas7 | |||||||||||||
| cas8a1 | CXXC-CXXC | y | y | ||||||||||||||||||
| cmx1 | y | y | |||||||||||||||||||
| cst1 | y | [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01908 01908] | y | ||||||||||||||||||
| csx13 | y | y | |||||||||||||||||||
| csx8 | y | y | |||||||||||||||||||
| cas8a2 | csa4 | y | [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01914 01914] | y | |||||||||||||||||
| csx9 | y | y | |||||||||||||||||||
| cas8b | TM1802 | y | y | ||||||||||||||||||
| csh1 | y | [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR02591 02591] | y | ||||||||||||||||||
| cas8c | csd1 | y | [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01863 01863] | y | |||||||||||||||||
| csp2 | y | y | |||||||||||||||||||
| cas9 | csn1 | y | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG3513 3513] | [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01865 01865] | HNH endonuclease [13] | |||||||||||||||
| csx12 | y | y | |||||||||||||||||||
| cmr1 | cmr1 | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1367 1367] | [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01894 01894] | y | y | cas7 | ||||||||||||||
| cmr3 | cmr3 | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1769 1769] | [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01888 01888] | y | y | cas5 | ||||||||||||||
| cmr4 | cmr4 | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1336 1336] | [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR02580 02580] | y | y | cas7 | ||||||||||||||
| cmr5 | cmr5 | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG3337 3337] | [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01881 01881] | y | ||||||||||||||||
| cmr6 | cmr6 | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1604 1604] | [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01898 01898] | y | y | cas7 | ||||||||||||||
| csa5 | csa5 | y | [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01878 01878] | y | |||||||||||||||||
| csaX | csaX | y | [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR03876 03876] | ||||||||||||||||||
| csb1 | GSU0053 | y | y | ||||||||||||||||||
| csb2 | y | y | |||||||||||||||||||
| csb3 | y | y | |||||||||||||||||||
| csc1 | csc1 | y | y | cas5 | |||||||||||||||||
| csc2 | csc2 | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1337 1337] | y | y | cas7 | ||||||||||||||||
| cse1 | cse1 | casA | y | [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR02547 02547] | y | ||||||||||||||||
| cse2 | cse2 | casB | y | [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR02548 02548] | y | ||||||||||||||||
| csf1 | csf1 | y | |||||||||||||||||||
| csf2 | csf2 | y | y | cas7 | |||||||||||||||||
| csf3 | csf3 | y | y | ||||||||||||||||||
| csf4 | csf4 | y | |||||||||||||||||||
| csm2 | csm2 | y | [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01870 01870] | y | |||||||||||||||||
| csm3 | csc2 | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1337 1337] | y | y | cas7 | |||||||||||||||
| csm3 | y | y | y | cas7 | |||||||||||||||||
| csm4 | csm4 | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1567 1567] | [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01903 01903] | y | y | cas5 | ||||||||||||||
| csm5 | csm5 | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1332 1332] | [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01899 01899] | y | y | cas7 | ||||||||||||||
| csm6 | APE2256 | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1517 1517] | transcription regulation [62] | |||||||||||||||||
| csm6 | y | [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR02672 02672] | |||||||||||||||||||
| csn2 | csn2 | y | [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01866 01866] | ||||||||||||||||||
| csx1 | DXTHG | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1517 1517], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG4006 4006] | Helix-turn-helix, transcription regulation [13] | |||||||||||||||||
| NE0113 | y | ||||||||||||||||||||
| TIGR02710 | y | ||||||||||||||||||||
| csa3 | y | [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01884 01884] | |||||||||||||||||||
| csx1 | y | ||||||||||||||||||||
| csx2 | y | ||||||||||||||||||||
| csx10 | csx10 | y | y | ||||||||||||||||||
| csx14 | y | ||||||||||||||||||||
| csx15 | |||||||||||||||||||||
| csx16 | VVA1548 | y | |||||||||||||||||||
| csx17 | y | ||||||||||||||||||||
| csx3 | csx3 | y | |||||||||||||||||||
| csy1 | csy1 | y | [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR02564 02564] | y | |||||||||||||||||
| csy2 | csy2 | y | [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR02565 02565] | y | y | cas5 | |||||||||||||||
| csy3 | csy3 | y | [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR02566 02566] | y | cas7 |
