Team:Arizona State/Templates/cas table

From 2011.igem.org

(Difference between revisions)
Line 27: Line 27:
|cas1 || cas1 || cas1 || y || y || y || y || y || y || y || y || y || y ||  ||  ||  || {{:Team:Arizona State/Templates/cog|1518}} || {{:Team:Arizona State/Templates/tigr|00287}} ||  ||  || Nuclease {{:Team:Arizona State/Templates/ref|72}} ||  
|cas1 || cas1 || cas1 || y || y || y || y || y || y || y || y || y || y ||  ||  ||  || {{:Team:Arizona State/Templates/cog|1518}} || {{:Team:Arizona State/Templates/tigr|00287}} ||  ||  || Nuclease {{:Team:Arizona State/Templates/ref|72}} ||  
|-
|-
-
| rowspan="3"| cas10 || cmr2 ||  ||  ||  ||  ||  ||  ||  ||  ||  || y || y ||  ||  ||  || {{:Team:Arizona State/Templates/cog|1353}} || {{:Team:Arizona State/Templates/tigr|02577}} ||  || y || Polymerase {{:Team:Arizona State/Templates/ref|72}} ||  
+
| rowspan="3"| cas10 || cmr2 ||  ||  ||  ||  ||  ||  ||  ||  ||  || y || y ||  ||  ||  || {{:Team:Arizona State/Templates/cog|1353}} || {{:Team:Arizona State/Templates/tigr|02577}} ||  || y || rowspan="3"| Polymerase {{:Team:Arizona State/Templates/ref|72}} ||  
|-
|-
-
| csm1 ||  ||  ||  ||  ||  ||  ||  ||  ||  || y || y ||  ||  ||  || {{:Team:Arizona State/Templates/cog|1353}} || {{:Team:Arizona State/Templates/tigr|02578}} ||  || y || Polymerase {{:Team:Arizona State/Templates/ref|72}} ||  
+
| csm1 ||  ||  ||  ||  ||  ||  ||  ||  ||  || y || y ||  ||  ||  || {{:Team:Arizona State/Templates/cog|1353}} || {{:Team:Arizona State/Templates/tigr|02578}} ||  || y ||  
|-
|-
-
| csx11 ||  ||  ||  ||  ||  ||  ||  ||  ||  || y || y ||  ||  ||  || {{:Team:Arizona State/Templates/cog|1353}} ||  ||  || y || Polymerase {{:Team:Arizona State/Templates/ref|72}} ||  
+
| csx11 ||  ||  ||  ||  ||  ||  ||  ||  ||  || y || y ||  ||  ||  || {{:Team:Arizona State/Templates/cog|1353}} ||  ||  || y ||  
|-
|-
|cas10d || csc3 ||  ||  ||  ||  || y ||  ||  ||  ||  ||  ||  ||  ||  ||  || {{:Team:Arizona State/Templates/cog|1353}} ||  ||  || y ||  ||  
|cas10d || csc3 ||  ||  ||  ||  || y ||  ||  ||  ||  ||  ||  ||  ||  ||  || {{:Team:Arizona State/Templates/cog|1353}} ||  ||  || y ||  ||  
Line 41: Line 41:
|cas3'' ||  ||  || y || y ||  ||  ||  ||  ||  ||  ||  ||  ||  ||  ||  || {{:Team:Arizona State/Templates/cog|2254}} ||  ||  ||  ||  ||  
|cas3'' ||  ||  || y || y ||  ||  ||  ||  ||  ||  ||  ||  ||  ||  ||  || {{:Team:Arizona State/Templates/cog|2254}} ||  ||  ||  ||  ||  
|-
|-
-
| rowspan="2"| cas4 || cas4 ||  || y || y || y || y ||  ||  ||  || y ||  ||  ||  ||  ||  || {{:Team:Arizona State/Templates/cog|1468}} || {{:Team:Arizona State/Templates/tigr|00372}} ||  ||  || RecB exonuclease {{:Team:Arizona State/Templates/ref|72}}{{:Team:Arizona State/Templates/ref|73}} ||  
+
| rowspan="2"| cas4 || cas4 ||  || y || y || y || y ||  ||  ||  || y ||  ||  ||  ||  ||  || {{:Team:Arizona State/Templates/cog|1468}} || {{:Team:Arizona State/Templates/tigr|00372}} ||  ||  || rowspan="2"| RecB exonuclease {{:Team:Arizona State/Templates/ref|72}}{{:Team:Arizona State/Templates/ref|73}} ||  
|-
|-
-
| csa1 ||  || y || y || y || y ||  ||  ||  || y ||  ||  ||  ||  ||  || {{:Team:Arizona State/Templates/cog|1468}} || {{:Team:Arizona State/Templates/tigr|01896}} ||  || || RecB exonuclease {{:Team:Arizona State/Templates/ref|72}}{{:Team:Arizona State/Templates/ref|73}} ||  
+
| csa1 ||  || y || y || y || y ||  ||  ||  || y ||  ||  ||  ||  ||  || {{:Team:Arizona State/Templates/cog|1468}} || {{:Team:Arizona State/Templates/tigr|01896}} ||  || ||  
|-
|-
-
| rowspan="7"| cas5 || cas5d || rowspan="7"| casD || y || y || y ||  || y ||  ||  ||  ||  ||  ||  ||  ||  || {{:Team:Arizona State/Templates/cog|1688}} || {{:Team:Arizona State/Templates/tigr|01876}} || y || y || N-terminal domain {{:Team:Arizona State/Templates/ref|13}}, crRNA processing {{:Team:Arizona State/Templates/ref|62}} || cas5
+
| rowspan="7"| cas5 || cas5d || rowspan="7"| casD || y || y || y ||  || y ||  ||  ||  ||  ||  ||  ||  ||  || {{:Team:Arizona State/Templates/cog|1688}} || {{:Team:Arizona State/Templates/tigr|01876}} || y || y || rowspan="7"| N-terminal domain {{:Team:Arizona State/Templates/ref|13}}, crRNA processing {{:Team:Arizona State/Templates/ref|62}} || cas5
|-
|-
-
| cas5e || y || y || y ||  || y ||  ||  ||  ||  ||  ||  ||  ||  || {{:Team:Arizona State/Templates/cog|1688}} || {{:Team:Arizona State/Templates/tigr|01868}} || y || y || N-terminal domain {{:Team:Arizona State/Templates/ref|13}}, crRNA processing {{:Team:Arizona State/Templates/ref|62}} || cas5
+
| cas5e || y || y || y ||  || y ||  ||  ||  ||  ||  ||  ||  ||  || {{:Team:Arizona State/Templates/cog|1688}} || {{:Team:Arizona State/Templates/tigr|01868}} || y || y || cas5
|-
|-
-
| cas5h || y || y || y ||  || y ||  ||  ||  ||  ||  ||  ||  ||  || {{:Team:Arizona State/Templates/cog|1688}} || {{:Team:Arizona State/Templates/tigr|02592}} || y || y || N-terminal domain {{:Team:Arizona State/Templates/ref|13}}, crRNA processing {{:Team:Arizona State/Templates/ref|62}} || cas5
+
| cas5h || y || y || y ||  || y ||  ||  ||  ||  ||  ||  ||  ||  || {{:Team:Arizona State/Templates/cog|1688}} || {{:Team:Arizona State/Templates/tigr|02592}} || y || y || cas5
|-
|-
-
| cas5t || y || y || y ||  || y ||  ||  ||  ||  ||  ||  ||  ||  || {{:Team:Arizona State/Templates/cog|1688}} || {{:Team:Arizona State/Templates/tigr|01895}} || y || y || N-terminal domain {{:Team:Arizona State/Templates/ref|13}}, crRNA processing {{:Team:Arizona State/Templates/ref|62}} || cas5
+
| cas5t || y || y || y ||  || y ||  ||  ||  ||  ||  ||  ||  ||  || {{:Team:Arizona State/Templates/cog|1688}} || {{:Team:Arizona State/Templates/tigr|01895}} || y || y || cas5
|-
|-
-
| cmx5 || y || y || y ||  || y ||  ||  ||  ||  ||  ||  ||  ||  || {{:Team:Arizona State/Templates/cog|1688}} ||  || y || y || N-terminal domain {{:Team:Arizona State/Templates/ref|13}}, crRNA processing {{:Team:Arizona State/Templates/ref|62}} || cas5
+
| cmx5 || y || y || y ||  || y ||  ||  ||  ||  ||  ||  ||  ||  || {{:Team:Arizona State/Templates/cog|1688}} ||  || y || y || cas5
|-
|-
-
| csa5a || y || y || y ||  || y ||  ||  ||  ||  ||  ||  ||  ||  || {{:Team:Arizona State/Templates/cog|1688}} || {{:Team:Arizona State/Templates/tigr|01874}} || y || y || N-terminal domain {{:Team:Arizona State/Templates/ref|13}}, crRNA processing {{:Team:Arizona State/Templates/ref|62}} || cas5
+
| csa5a || y || y || y ||  || y ||  ||  ||  ||  ||  ||  ||  ||  || {{:Team:Arizona State/Templates/cog|1688}} || {{:Team:Arizona State/Templates/tigr|01874}} || y || y || cas5
|-
|-
-
| csa5p || y || y || y ||  || y ||  ||  ||  ||  ||  ||  ||  ||  || {{:Team:Arizona State/Templates/cog|1688}} ||  || y || y || N-terminal domain {{:Team:Arizona State/Templates/ref|13}}, crRNA processing {{:Team:Arizona State/Templates/ref|62}} || cas5
+
| csa5p || y || y || y ||  || y ||  ||  ||  ||  ||  ||  ||  ||  || {{:Team:Arizona State/Templates/cog|1688}} ||  || y || y || cas5
|-
|-
-
| rowspan="2"| cas6 || cas6 ||  || y || y ||  || y ||  ||  ||  ||  || y || y ||  ||  ||  || {{:Team:Arizona State/Templates/cog|1583}}, {{:Team:Arizona State/Templates/cog|5551}} || {{:Team:Arizona State/Templates/tigr|01877}} || y ||  || crRNA processing {{:Team:Arizona State/Templates/ref|62}} || cas6
+
| rowspan="2"| cas6 || cas6 ||  || y || y ||  || y ||  ||  ||  ||  || y || y ||  ||  ||  || {{:Team:Arizona State/Templates/cog|1583}}, {{:Team:Arizona State/Templates/cog|5551}} || {{:Team:Arizona State/Templates/tigr|01877}} || y ||  || rowspan="4"| crRNA processing {{:Team:Arizona State/Templates/ref|62}} || cas6
|-
|-
-
| cmx6 ||  || y || y ||  || y ||  ||  ||  ||  || y || y ||  ||  ||  || {{:Team:Arizona State/Templates/cog|1583}}, {{:Team:Arizona State/Templates/cog|5551}} ||  || y || || crRNA processing {{:Team:Arizona State/Templates/ref|62}} || cas6
+
| cmx6 ||  || y || y ||  || y ||  ||  ||  ||  || y || y ||  ||  ||  || {{:Team:Arizona State/Templates/cog|1583}}, {{:Team:Arizona State/Templates/cog|5551}} ||  || y || || cas6
|-
|-
-
|cas6e || cse3 || casE ||  ||  ||  ||  || y ||  ||  ||  ||  ||  ||  ||  ||  ||  || {{:Team:Arizona State/Templates/tigr|01907}} || y ||  || crRNA processing {{:Team:Arizona State/Templates/ref|62}} || cas6
+
|cas6e || cse3 || casE ||  ||  ||  ||  || y ||  ||  ||  ||  ||  ||  ||  ||  ||  || {{:Team:Arizona State/Templates/tigr|01907}} || y ||  || cas6
|-
|-
-
|cas6f || csy4 ||  ||  ||  ||  ||  ||  || y ||  ||  ||  ||  ||  ||  ||  ||  || {{:Team:Arizona State/Templates/tigr|02563}} || y ||  || crRNA processing {{:Team:Arizona State/Templates/ref|62}} || cas6
+
|cas6f || csy4 ||  ||  ||  ||  ||  ||  || y ||  ||  ||  ||  ||  ||  ||  ||  || {{:Team:Arizona State/Templates/tigr|02563}} || y ||  || cas6
|-
|-
-
| rowspan="6"| cas7 || csa2 || rowspan="6"| casC || y || y || y ||  || y ||  ||  ||  ||  ||  ||  ||  ||  || {{:Team:Arizona State/Templates/cog|1857}}, {{:Team:Arizona State/Templates/cog|3649}} || {{:Team:Arizona State/Templates/tigr|02583}} || y || y || Regulation {{:Team:Arizona State/Templates/ref|13}} || cas7
+
| rowspan="6"| cas7 || csa2 || rowspan="6"| casC || y || y || y ||  || y ||  ||  ||  ||  ||  ||  ||  ||  || {{:Team:Arizona State/Templates/cog|1857}}, {{:Team:Arizona State/Templates/cog|3649}} || {{:Team:Arizona State/Templates/tigr|02583}} || y || y || rowspan="6"| Regulation {{:Team:Arizona State/Templates/ref|13}} || cas7
|-
|-
-
| csd2 || y || y || y ||  || y ||  ||  ||  ||  ||  ||  ||  ||  || {{:Team:Arizona State/Templates/cog|1857}}, {{:Team:Arizona State/Templates/cog|3649}} || {{:Team:Arizona State/Templates/tigr|02589}} || y || y || Regulation {{:Team:Arizona State/Templates/ref|13}} || cas7
+
| csd2 || y || y || y ||  || y ||  ||  ||  ||  ||  ||  ||  ||  || {{:Team:Arizona State/Templates/cog|1857}}, {{:Team:Arizona State/Templates/cog|3649}} || {{:Team:Arizona State/Templates/tigr|02589}} || y || y || cas7
|-
|-
-
| cse4 || y || y || y ||  || y ||  ||  ||  ||  ||  ||  ||  ||  || {{:Team:Arizona State/Templates/cog|1857}}, {{:Team:Arizona State/Templates/cog|3649}} || {{:Team:Arizona State/Templates/tigr|01869}} || y || y || Regulation {{:Team:Arizona State/Templates/ref|13}} || cas7
+
| cse4 || y || y || y ||  || y ||  ||  ||  ||  ||  ||  ||  ||  || {{:Team:Arizona State/Templates/cog|1857}}, {{:Team:Arizona State/Templates/cog|3649}} || {{:Team:Arizona State/Templates/tigr|01869}} || y || y || cas7
|-
|-
-
| csh2 || y || y || y ||  || y ||  ||  ||  ||  ||  ||  ||  ||  || {{:Team:Arizona State/Templates/cog|1857}}, {{:Team:Arizona State/Templates/cog|3649}} || {{:Team:Arizona State/Templates/tigr|02590}} || y || y || Regulation {{:Team:Arizona State/Templates/ref|13}} || cas7
+
| csh2 || y || y || y ||  || y ||  ||  ||  ||  ||  ||  ||  ||  || {{:Team:Arizona State/Templates/cog|1857}}, {{:Team:Arizona State/Templates/cog|3649}} || {{:Team:Arizona State/Templates/tigr|02590}} || y || y || cas7
|-
|-
-
| csp1 || y || y || y ||  || y ||  ||  ||  ||  ||  ||  ||  ||  || {{:Team:Arizona State/Templates/cog|1857}}, {{:Team:Arizona State/Templates/cog|3649}} ||  || y || y || Regulation {{:Team:Arizona State/Templates/ref|13}} || cas7
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| csp1 || y || y || y ||  || y ||  ||  ||  ||  ||  ||  ||  ||  || {{:Team:Arizona State/Templates/cog|1857}}, {{:Team:Arizona State/Templates/cog|3649}} ||  || y || y || cas7
|-
|-
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| cst2 || y || y || y ||  || y ||  ||  ||  ||  ||  ||  ||  ||  || {{:Team:Arizona State/Templates/cog|1857}}, {{:Team:Arizona State/Templates/cog|3649}} || {{:Team:Arizona State/Templates/tigr|02585}} || y || y || Regulation {{:Team:Arizona State/Templates/ref|13}} || cas7
+
| cst2 || y || y || y ||  || y ||  ||  ||  ||  ||  ||  ||  ||  || {{:Team:Arizona State/Templates/cog|1857}}, {{:Team:Arizona State/Templates/cog|3649}} || {{:Team:Arizona State/Templates/tigr|02585}} || y || y || cas7
|-
|-
| rowspan="5"| cas8a1 || CXXC-CXXC ||  || y ||  ||  ||  ||  ||  ||  ||  ||  ||  ||  ||  ||  ||  ||  ||  || y ||  ||  
| rowspan="5"| cas8a1 || CXXC-CXXC ||  || y ||  ||  ||  ||  ||  ||  ||  ||  ||  ||  ||  ||  ||  ||  ||  || y ||  ||  
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| csp2 ||  ||  ||  || y ||  ||  ||  ||  ||  ||  ||  ||  ||  ||  ||  ||  ||  || y ||  ||  
| csp2 ||  ||  ||  || y ||  ||  ||  ||  ||  ||  ||  ||  ||  ||  ||  ||  ||  || y ||  ||  
|-
|-
-
| rowspan="2"| cas9 || csn1 ||  ||  ||  ||  ||  ||  ||  || y || y ||  ||  ||  ||  ||  || {{:Team:Arizona State/Templates/cog|3513}} || {{:Team:Arizona State/Templates/tigr|01865}} ||  ||  || HNH endonuclease {{:Team:Arizona State/Templates/ref|13}} ||  
+
| rowspan="2"| cas9 || csn1 ||  ||  ||  ||  ||  ||  ||  || y || y ||  ||  ||  ||  ||  || {{:Team:Arizona State/Templates/cog|3513}} || {{:Team:Arizona State/Templates/tigr|01865}} ||  ||  || rowspan="2"| HNH endonuclease {{:Team:Arizona State/Templates/ref|13}} ||  
|-
|-
-
| csx12 ||  ||  ||  ||  ||  ||  ||  || y || y ||  ||  ||  ||  ||  || {{:Team:Arizona State/Templates/cog|3513}} ||  ||  || || HNH endonuclease {{:Team:Arizona State/Templates/ref|13}} ||  
+
| csx12 ||  ||  ||  ||  ||  ||  ||  || y || y ||  ||  ||  ||  ||  || {{:Team:Arizona State/Templates/cog|3513}} ||  ||  || ||  
|-
|-
|cmr1 || cmr1 ||  ||  ||  ||  ||  ||  ||  ||  ||  ||  || y ||  ||  ||  || {{:Team:Arizona State/Templates/cog|1367}} || {{:Team:Arizona State/Templates/tigr|01894}} || y || y ||  || cas7
|cmr1 || cmr1 ||  ||  ||  ||  ||  ||  ||  ||  ||  ||  || y ||  ||  ||  || {{:Team:Arizona State/Templates/cog|1367}} || {{:Team:Arizona State/Templates/tigr|01894}} || y || y ||  || cas7
Line 151: Line 151:
|csm5 || csm5 ||  ||  ||  ||  ||  ||  ||  ||  ||  || y ||  ||  ||  ||  || {{:Team:Arizona State/Templates/cog|1332}} || {{:Team:Arizona State/Templates/tigr|01899}} || y || y ||  || cas7
|csm5 || csm5 ||  ||  ||  ||  ||  ||  ||  ||  ||  || y ||  ||  ||  ||  || {{:Team:Arizona State/Templates/cog|1332}} || {{:Team:Arizona State/Templates/tigr|01899}} || y || y ||  || cas7
|-
|-
-
| rowspan="2"| csm6 || APE2256 ||  ||  ||  ||  ||  ||  ||  ||  ||  || y ||  ||  ||  ||  || {{:Team:Arizona State/Templates/cog|1517}} ||  ||  ||  || transctiption regulation {{:Team:Arizona State/Templates/ref|62}} ||  
+
| rowspan="2"| csm6 || APE2256 ||  ||  ||  ||  ||  ||  ||  ||  ||  || y ||  ||  ||  ||  || {{:Team:Arizona State/Templates/cog|1517}} ||  ||  ||  || rowspan="2"| transcription regulation {{:Team:Arizona State/Templates/ref|62}} ||  
|-
|-
-
| csm6 ||  ||  ||  ||  ||  ||  ||  ||  ||  || y ||  ||  ||  ||  || {{:Team:Arizona State/Templates/cog|1517}} || {{:Team:Arizona State/Templates/tigr|02672}} ||  ||  || transctiption regulation {{:Team:Arizona State/Templates/ref|62}} ||  
+
| csm6 ||  ||  ||  ||  ||  ||  ||  ||  ||  || y ||  ||  ||  ||  || {{:Team:Arizona State/Templates/cog|1517}} || {{:Team:Arizona State/Templates/tigr|02672}} ||  ||  ||  
|-
|-
|csn2 || csn2 ||  ||  ||  ||  ||  ||  ||  || y ||  ||  ||  ||  ||  ||  ||  || {{:Team:Arizona State/Templates/tigr|01866}} ||  ||  ||  ||  
|csn2 || csn2 ||  ||  ||  ||  ||  ||  ||  || y ||  ||  ||  ||  ||  ||  ||  || {{:Team:Arizona State/Templates/tigr|01866}} ||  ||  ||  ||  
|-
|-
-
| rowspan="6"| csx1 || DXTHG ||  ||  ||  ||  ||  ||  ||  ||  ||  ||  ||  ||  || y ||  || {{:Team:Arizona State/Templates/cog|1517}}, {{:Team:Arizona State/Templates/cog|4006}} ||  ||  ||  || Helix-turn-helix, transcription regulation {{:Team:Arizona State/Templates/ref|13}} ||  
+
| rowspan="6"| csx1 || DXTHG ||  ||  ||  ||  ||  ||  ||  ||  ||  ||  ||  ||  || y ||  || {{:Team:Arizona State/Templates/cog|1517}}, {{:Team:Arizona State/Templates/cog|4006}} ||  ||  ||  || rowspan="6"| Helix-turn-helix, transcription regulation {{:Team:Arizona State/Templates/ref|13}} ||  
|-
|-
-
| NE0113 ||  ||  ||  ||  ||  ||  ||  ||  ||  ||  ||  ||  || y ||  || {{:Team:Arizona State/Templates/cog|1517}}, {{:Team:Arizona State/Templates/cog|4006}} ||  ||  || || Helix-turn-helix, transcription regulation {{:Team:Arizona State/Templates/ref|13}} ||  
+
| NE0113 ||  ||  ||  ||  ||  ||  ||  ||  ||  ||  ||  ||  || y ||  || {{:Team:Arizona State/Templates/cog|1517}}, {{:Team:Arizona State/Templates/cog|4006}} ||  ||  || ||  
|-
|-
-
| TIGR02710 ||  ||  ||  ||  ||  ||  ||  ||  ||  ||  ||  ||  || y ||  || {{:Team:Arizona State/Templates/cog|1517}}, {{:Team:Arizona State/Templates/cog|4006}} ||  ||  || || Helix-turn-helix, transcription regulation {{:Team:Arizona State/Templates/ref|13}} ||  
+
| TIGR02710 ||  ||  ||  ||  ||  ||  ||  ||  ||  ||  ||  ||  || y ||  || {{:Team:Arizona State/Templates/cog|1517}}, {{:Team:Arizona State/Templates/cog|4006}} ||  ||  || ||  
|-
|-
-
| csa3 ||  ||  ||  ||  ||  ||  ||  ||  ||  ||  ||  ||  || y ||  || {{:Team:Arizona State/Templates/cog|1517}}, {{:Team:Arizona State/Templates/cog|4006}} || {{:Team:Arizona State/Templates/tigr|01884}} ||  || || Helix-turn-helix, transcription regulation {{:Team:Arizona State/Templates/ref|13}} ||  
+
| csa3 ||  ||  ||  ||  ||  ||  ||  ||  ||  ||  ||  ||  || y ||  || {{:Team:Arizona State/Templates/cog|1517}}, {{:Team:Arizona State/Templates/cog|4006}} || {{:Team:Arizona State/Templates/tigr|01884}} ||  || ||  
|-
|-
-
| csx1 ||  ||  ||  ||  ||  ||  ||  ||  ||  ||  ||  ||  || y ||  || {{:Team:Arizona State/Templates/cog|1517}}, {{:Team:Arizona State/Templates/cog|4006}} ||  ||  || || Helix-turn-helix, transcription regulation {{:Team:Arizona State/Templates/ref|13}} ||  
+
| csx1 ||  ||  ||  ||  ||  ||  ||  ||  ||  ||  ||  ||  || y ||  || {{:Team:Arizona State/Templates/cog|1517}}, {{:Team:Arizona State/Templates/cog|4006}} ||  ||  || ||  
|-
|-
-
| csx2 ||  ||  ||  ||  ||  ||  ||  ||  ||  ||  ||  ||  || y ||  || {{:Team:Arizona State/Templates/cog|1517}}, {{:Team:Arizona State/Templates/cog|4006}} ||  ||  || || Helix-turn-helix, transcription regulation {{:Team:Arizona State/Templates/ref|13}} ||  
+
| csx2 ||  ||  ||  ||  ||  ||  ||  ||  ||  ||  ||  ||  || y ||  || {{:Team:Arizona State/Templates/cog|1517}}, {{:Team:Arizona State/Templates/cog|4006}} ||  ||  || ||  
|-
|-
|csx10 || csx10 ||  ||  ||  ||  ||  ||  ||  ||  ||  ||  ||  || y ||  ||  ||  ||  || y ||  ||  ||  
|csx10 || csx10 ||  ||  ||  ||  ||  ||  ||  ||  ||  ||  ||  || y ||  ||  ||  ||  || y ||  ||  ||  

Revision as of 20:57, 10 August 2011

Name [62] Name [13] Name[23] I-A I-B I-C I-D I-E I-F II-A II-B III-A III-B I-U III-U U COG TIGR Ramp [62] cascade-like complex [62] putative function grouping [71]
cas_HTH
cas1 cas1 cas1 y y y y y y y y y y [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1518 1518] [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR00287 00287] Nuclease [72]
cas10 cmr2 y y [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1353 1353] [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR02577 02577] y Polymerase [72]
csm1 y y [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1353 1353] [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR02578 02578] y
csx11 y y [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1353 1353] y
cas10d csc3 y [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1353 1353] y
cas2 cas2 cas2 y y y y y y y y y y [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1343 1343], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG3512 3512] [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01573 01573]
cas3' cas3 cas3 y y y y y y [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1203 1203] [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01587 01587] Helicase, nuclease [13]
cas3 y y [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG2254 2254]
cas4 cas4 y y y y y [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1468 1468] [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR00372 00372] RecB exonuclease [72][73]
csa1 y y y y y [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1468 1468] [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01896 01896]
cas5 cas5d casD y y y y [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1688 1688] [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01876 01876] y y N-terminal domain [13], crRNA processing [62] cas5
cas5e y y y y [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1688 1688] [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01868 01868] y y cas5
cas5h y y y y [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1688 1688] [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR02592 02592] y y cas5
cas5t y y y y [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1688 1688] [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01895 01895] y y cas5
cmx5 y y y y [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1688 1688] y y cas5
csa5a y y y y [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1688 1688] [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01874 01874] y y cas5
csa5p y y y y [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1688 1688] y y cas5
cas6 cas6 y y y y y [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1583 1583], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG5551 5551] [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01877 01877] y crRNA processing [62] cas6
cmx6 y y y y y [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1583 1583], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG5551 5551] y cas6
cas6e cse3 casE y [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01907 01907] y cas6
cas6f csy4 y [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR02563 02563] y cas6
cas7 csa2 casC y y y y [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1857 1857], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG3649 3649] [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR02583 02583] y y Regulation [13] cas7
csd2 y y y y [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1857 1857], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG3649 3649] [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR02589 02589] y y cas7
cse4 y y y y [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1857 1857], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG3649 3649] [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01869 01869] y y cas7
csh2 y y y y [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1857 1857], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG3649 3649] [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR02590 02590] y y cas7
csp1 y y y y [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1857 1857], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG3649 3649] y y cas7
cst2 y y y y [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1857 1857], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG3649 3649] [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR02585 02585] y y cas7
cas8a1 CXXC-CXXC y y
cmx1 y y
cst1 y [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01908 01908] y
csx13 y y
csx8 y y
cas8a2 csa4 y [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01914 01914] y
csx9 y y
cas8b TM1802 y y
csh1 y [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR02591 02591] y
cas8c csd1 y [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01863 01863] y
csp2 y y
cas9 csn1 y y [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG3513 3513] [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01865 01865] HNH endonuclease [13]
csx12 y y [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG3513 3513]
cmr1 cmr1 y [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1367 1367] [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01894 01894] y y cas7
cmr3 cmr3 y [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1769 1769] [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01888 01888] y y cas5
cmr4 cmr4 y [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1336 1336] [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR02580 02580] y y cas7
cmr5 cmr5 y [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG3337 3337] [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01881 01881] y
cmr6 cmr6 y [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1604 1604] [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01898 01898] y y cas7
csa5 csa5 y [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01878 01878] y
csaX csaX y [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR03876 03876]
csb1 GSU0053 y y
csb2 y y
csb3 y y
csc1 csc1 y y cas5
csc2 csc2 [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1337 1337] y y cas7
cse1 cse1 casA y [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR02547 02547] y
cse2 cse2 casB y [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR02548 02548] y
csf1 csf1 y
csf2 csf2 y y cas7
csf3 csf3 y y
csf4 csf4 y
csm2 csm2 y [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01870 01870] y
csm3 csc2 y [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1337 1337] y y cas7
csm3 y [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1337 1337] y y cas7
csm4 csm4 y [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1567 1567] [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01903 01903] y y cas5
csm5 csm5 y [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1332 1332] [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01899 01899] y y cas7
csm6 APE2256 y [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1517 1517] transcription regulation [62]
csm6 y [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1517 1517] [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR02672 02672]
csn2 csn2 y [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01866 01866]
csx1 DXTHG y [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1517 1517], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG4006 4006] Helix-turn-helix, transcription regulation [13]
NE0113 y [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1517 1517], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG4006 4006]
TIGR02710 y [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1517 1517], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG4006 4006]
csa3 y [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1517 1517], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG4006 4006] [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01884 01884]
csx1 y [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1517 1517], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG4006 4006]
csx2 y [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1517 1517], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG4006 4006]
csx10 csx10 y y
csx14 y
csx15
csx16 VVA1548 y
csx17 y
csx3 csx3 y
csy1 csy1 y [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR02564 02564] y
csy2 csy2 y [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR02565 02565] y y cas5
csy3 csy3 y [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR02566 02566] y cas7
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