"
Team:Arizona State/Templates/cas table
From 2011.igem.org
(Difference between revisions)
Ethan ward (Talk | contribs)
(Created page with "{| class="wikitable sortable" ! Name {{:Team:Arizona State/Templates/ref|62}} ! Name {{:Team:Arizona State/Templates/ref|13}} ! Name{{:Team:Arizona State/Templates/ref|23}} ! I-A...")
Newer edit →
(Created page with "{| class="wikitable sortable" ! Name {{:Team:Arizona State/Templates/ref|62}} ! Name {{:Team:Arizona State/Templates/ref|13}} ! Name{{:Team:Arizona State/Templates/ref|23}} ! I-A...")
Newer edit →
Revision as of 18:19, 10 August 2011
| Name [62] | Name [13] | Name[23] | I-A | I-B | I-C | I-D | I-E | I-F | II-A | II-B | III-A | III-B | I-U | III-U | U | COG | TIGR | Ramp [62] | cascade-like complex [62] | putative function | grouping [71] |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| cas_HTH | |||||||||||||||||||||
| cas1 | cas1 | cas1 | y | y | y | y | y | y | y | y | y | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1518 1518] | Nuclease [72] | |||||||
| cas10 | cmr2 | y | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1353 1353] | y | Polymerase [72] | |||||||||||||||
| cas10 | csm1 | y | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1353 1353] | y | Polymerase [72] | |||||||||||||||
| cas10 | csx11 | y | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1353 1353] | y | Polymerase [72] | |||||||||||||||
| cas10d | csc3 | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1353 1353] | y | |||||||||||||||||
| cas2 | cas2 | cas2 | y | y | y | y | y | y | y | y | y | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1343 1343], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG3512 3512] | ||||||||
| cas3' | cas3 | cas3 | y | y | y | y | y | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1203 1203] | Helicase, nuclease [13] | |||||||||||
| cas3 | y | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG2254 2254] | ||||||||||||||||||
| cas4 | cas4 | y | y | y | y | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1468 1468] | RecB exonuclease [72][73] | |||||||||||||
| cas4 | csa1 | y | y | y | y | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1468 1468] | RecB exonuclease [72][73] | |||||||||||||
| cas5 | cas5d | casD | y | y | y | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1688 1688] | y | y | N-terminal domain [13], crRNA processing [62] | cas5 | ||||||||||
| cas5 | cas5e | casD | y | y | y | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1688 1688] | y | y | N-terminal domain [13], crRNA processing [62] | cas5 | ||||||||||
| cas5 | cas5h | casD | y | y | y | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1688 1688] | y | y | N-terminal domain [13], crRNA processing [62] | cas5 | ||||||||||
| cas5 | cas5t | casD | y | y | y | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1688 1688] | y | y | N-terminal domain [13], crRNA processing [62] | cas5 | ||||||||||
| cas5 | cmx5 | casD | y | y | y | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1688 1688] | y | y | N-terminal domain [13], crRNA processing [62] | cas5 | ||||||||||
| cas5 | csa5a | casD | y | y | y | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1688 1688] | y | y | N-terminal domain [13], crRNA processing [62] | cas5 | ||||||||||
| cas5 | csa5p | casD | y | y | y | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1688 1688] | y | y | N-terminal domain [13], crRNA processing [62] | cas5 | ||||||||||
| cas6 | cas6 | y | y | y | y | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1583 1583], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG5551 5551] | y | crRNA processing [62] | cas6 | |||||||||||
| cas6 | cmx6 | y | y | y | y | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1583 1583], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG5551 5551] | y | crRNA processing [62] | cas6 | |||||||||||
| cas6e | cse3 | casE | y | y | crRNA processing [62] | cas6 | |||||||||||||||
| cas6f | csy4 | y | y | crRNA processing [62] | cas6 | ||||||||||||||||
| cas7 | csa2 | casC | y | y | y | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1857 1857], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG3649 3649] | y | y | Regulation [13] | cas7 | ||||||||||
| cas7 | csd2 | casC | y | y | y | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1857 1857], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG3649 3649] | y | y | Regulation [13] | cas7 | ||||||||||
| cas7 | cse4 | casC | y | y | y | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1857 1857], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG3649 3649] | y | y | Regulation [13] | cas7 | ||||||||||
| cas7 | csh2 | casC | y | y | y | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1857 1857], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG3649 3649] | y | y | Regulation [13] | cas7 | ||||||||||
| cas7 | csp1 | casC | y | y | y | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1857 1857], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG3649 3649] | y | y | Regulation [13] | cas7 | ||||||||||
| cas7 | cst2 | casC | y | y | y | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1857 1857], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG3649 3649] | y | y | Regulation [13] | cas7 | ||||||||||
| cas8a1 | CXXC-CXXC | y | y | ||||||||||||||||||
| cas8a1 | cmx1 | y | y | ||||||||||||||||||
| cas8a1 | cst1 | y | y | ||||||||||||||||||
| cas8a1 | csx13 | y | y | ||||||||||||||||||
| cas8a1 | csx8 | y | y | ||||||||||||||||||
| cas8a2 | csa4 | y | y | ||||||||||||||||||
| cas8a2 | csx9 | y | y | ||||||||||||||||||
| cas8b | TM1802 | y | y | ||||||||||||||||||
| cas8b | csh1 | y | y | ||||||||||||||||||
| cas8c | csd1 | y | y | ||||||||||||||||||
| cas8c | csp2 | y | y | ||||||||||||||||||
| cas9 | csn1 | y | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG3513 3513] | HNH endonuclease [13] | ||||||||||||||||
| cas9 | csx12 | y | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG3513 3513] | HNH endonuclease [13] | ||||||||||||||||
| cmr1 | cmr1 | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1367 1367] | y | y | cas7 | |||||||||||||||
| cmr3 | cmr3 | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1769 1769] | y | y | cas5 | |||||||||||||||
| cmr4 | cmr4 | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1336 1336] | y | y | cas7 | |||||||||||||||
| cmr5 | cmr5 | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG3337 3337] | y | |||||||||||||||||
| cmr6 | cmr6 | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1604 1604] | y | y | cas7 | |||||||||||||||
| csa5 | csa5 | y | y | ||||||||||||||||||
| csaX | csaX | y | |||||||||||||||||||
| csb1 | GSU0053 | y | y | ||||||||||||||||||
| csb2 | y | y | |||||||||||||||||||
| csb3 | y | y | |||||||||||||||||||
| csc1 | csc1 | y | y | cas5 | |||||||||||||||||
| csc2 | csc2 | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1337 1337] | y | y | cas7 | ||||||||||||||||
| cse1 | cse1 | casA | y | y | |||||||||||||||||
| cse2 | cse2 | casB | y | y | |||||||||||||||||
| csf1 | csf1 | y | |||||||||||||||||||
| csf2 | csf2 | y | y | cas7 | |||||||||||||||||
| csf3 | csf3 | y | y | ||||||||||||||||||
| csf4 | csf4 | y | |||||||||||||||||||
| csm2 | csm2 | y | y | ||||||||||||||||||
| csm3 | csc2 | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1337 1337] | y | y | cas7 | |||||||||||||||
| csm3 | csm3 | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1337 1337] | y | y | cas7 | |||||||||||||||
| csm4 | csm4 | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1567 1567] | y | y | cas5 | |||||||||||||||
| csm5 | csm5 | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1332 1332] | y | y | cas7 | |||||||||||||||
| csm6 | APE2256 | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1517 1517] | transctiption regulation [62] | |||||||||||||||||
| csm6 | csm6 | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1517 1517] | transctiption regulation [62] | |||||||||||||||||
| csn2 | csn2 | y | |||||||||||||||||||
| csx1 | DXTHG | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1517 1517], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG4006 4006] | Helix-turn-helix, transcription regulation [13] | |||||||||||||||||
| csx1 | NE0113 | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1517 1517], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG4006 4006] | Helix-turn-helix, transcription regulation [13] | |||||||||||||||||
| csx1 | TIGR02710 | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1517 1517], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG4006 4006] | Helix-turn-helix, transcription regulation [13] | |||||||||||||||||
| csx1 | csa3 | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1517 1517], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG4006 4006] | Helix-turn-helix, transcription regulation [13] | |||||||||||||||||
| csx1 | csx1 | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1517 1517], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG4006 4006] | Helix-turn-helix, transcription regulation [13] | |||||||||||||||||
| csx1 | csx2 | y | [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1517 1517], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG4006 4006] | Helix-turn-helix, transcription regulation [13] | |||||||||||||||||
| csx10 | csx10 | y | y | ||||||||||||||||||
| csx14 | y | ||||||||||||||||||||
| csx15 | |||||||||||||||||||||
| csx16 | VVA1548 | y | |||||||||||||||||||
| csx17 | y | ||||||||||||||||||||
| csx3 | csx3 | y | |||||||||||||||||||
| csy1 | csy1 | y | y | ||||||||||||||||||
| csy2 | csy2 | y | y | y | cas5 | ||||||||||||||||
| csy3 | csy3 | y | y | cas7 |
