Team:UT-Tokyo/LabNote

From 2011.igem.org

(Difference between revisions)
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*Planting Negative control
*Planting Negative control
*Making frozen stock
*Making frozen stock
-
*Transformation(BBa_E0240, <nowiki>#</nowiki>3, B0015, <nowiki>#</nowiki>5, <nowiki>#</nowiki>10, ,J31000, ,J44000)
+
<html>*Transformation(BBa_E0240, <nowiki>#</nowiki><span class="part_num">3</span></html<html>, B0015, <nowiki>#</nowiki><span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">10</span></html, ,J31000, ,J44000)
<html></div></html>
<html></div></html>
Line 257: Line 257:
<html><div class="labDay"></html>
<html><div class="labDay"></html>
==='11/06/17(Fri)===
==='11/06/17(Fri)===
-
*Picking up colony(<nowiki>#</nowiki>3, B0015, B0040,<nowiki>#</nowiki>9, J31000, J44000)
+
<html>*Picking up colony(<nowiki>#</nowiki><span class="part_num">3</span></html<html>, B0015, B0040,<nowiki>#</nowiki><span class="part_num">9</span></html, J31000, J44000)
-
*Miniprep(<nowiki>#</nowiki>5)
+
<html>*Miniprep(<nowiki>#</nowiki><span class="part_num">5</span></html)
-
*Dissolution(<nowiki>#</nowiki>1, <nowiki>#</nowiki>2, K16500, <nowiki>#</nowiki>24)
+
<html>*Dissolution(<nowiki>#</nowiki><span class="part_num">1</span></html<html>, <nowiki>#</nowiki><span class="part_num">2</span></html<html>, K16500, <nowiki>#</nowiki><span class="part_num">24</span></html)
<html></div></html>
<html></div></html>
<html><div class="labDay"></html>
<html><div class="labDay"></html>
==='11/06/21(Tue)===
==='11/06/21(Tue)===
-
*Making frozen stock(<nowiki>#</nowiki>3, B0015, B0040, <nowiki>#</nowiki>9, J31000, J44000)
+
<html>*Making frozen stock(<nowiki>#</nowiki><span class="part_num">3</span></html<html>, B0015, B0040, <nowiki>#</nowiki><span class="part_num">9</span></html, J31000, J44000)
-
*Passafe culture(<nowiki>#</nowiki>9, J31000)
+
<html>*Passafe culture(<nowiki>#</nowiki><span class="part_num">9</span></html, J31000)
*Nanodrop again
*Nanodrop again
<html></div></html>
<html></div></html>
Line 271: Line 271:
<html><div class="labDay"></html>
<html><div class="labDay"></html>
==='11/06/22(Wed)===
==='11/06/22(Wed)===
-
*Miniprep(<nowiki>#</nowiki>9, J31000)
+
<html>*Miniprep(<nowiki>#</nowiki><span class="part_num">9</span></html, J31000)
*Making competent cell
*Making competent cell
<html></div></html>
<html></div></html>
Line 286: Line 286:
*Digest(product of Miniprep 06/09 EPcut)
*Digest(product of Miniprep 06/09 EPcut)
*Electrophoresis
*Electrophoresis
-
*Defrost and transformation(BBa_E0030, E0020, <nowiki>#</nowiki>14, I712052,<nowiki>#</nowiki>17)
+
<html>*Defrost and transformation(BBa_E0030, E0020, <nowiki>#</nowiki><span class="part_num">14</span></html<html>, I712052,<nowiki>#</nowiki><span class="part_num">17</span></html)
*Making 1×TAE, agarose gel, LB medium, LB plate(amp),
*Making 1×TAE, agarose gel, LB medium, LB plate(amp),
<html></div></html>
<html></div></html>
Line 302: Line 302:
==='11/07/01(Fri)===
==='11/07/01(Fri)===
*Digest(EPcut)
*Digest(EPcut)
-
*Miniprep(BBa_E0030, E0020, <nowiki>#</nowiki>14, I712052, <nowiki>#</nowiki>17)
+
<html>*Miniprep(BBa_E0030, E0020, <nowiki>#</nowiki><span class="part_num">14</span></html<html>, I712052, <nowiki>#</nowiki><span class="part_num">17</span></html)
<html></div></html>
<html></div></html>
Line 308: Line 308:
==='11/07/05(Tue)===
==='11/07/05(Tue)===
*Electrophoresis(product of digest 07/01)
*Electrophoresis(product of digest 07/01)
-
*Digest(<nowiki>#</nowiki>9, <nowiki>#</nowiki>14, <nowiki>#</nowiki>17, <nowiki>#</nowiki>3, <nowiki>#</nowiki>5)
+
<html>*Digest(<nowiki>#</nowiki><span class="part_num">9</span></html<html>, <nowiki>#</nowiki><span class="part_num">14</span></html<html>, <nowiki>#</nowiki><span class="part_num">17</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span></html<html>, <nowiki>#</nowiki><span class="part_num">5</span></html)
*Making antibiotic stock(1000×)(Km,Cm)
*Making antibiotic stock(1000×)(Km,Cm)
<html></div></html>
<html></div></html>
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==='11/07/06(Wed)===
==='11/07/06(Wed)===
*Gel  extraction (pre)(BBa_I712052)
*Gel  extraction (pre)(BBa_I712052)
-
*Picking up colony(Ba_J23119, <nowiki>#</nowiki>2, <nowiki>#</nowiki>24, <nowiki>#</nowiki>10)
+
<html>*Picking up colony(Ba_J23119, <nowiki>#</nowiki><span class="part_num">2</span></html<html>, <nowiki>#</nowiki><span class="part_num">24</span></html<html>, <nowiki>#</nowiki><span class="part_num">10</span></html)
*Making agarose gel
*Making agarose gel
<html></div></html>
<html></div></html>
Line 321: Line 321:
<html><div class="labDay"></html>
<html><div class="labDay"></html>
==='11/07/07(Thu)===
==='11/07/07(Thu)===
-
*Digest(BBa_E0240, <nowiki>#</nowiki>14, <nowiki>#</nowiki>17, <nowiki>#</nowiki>3, <nowiki>#</nowiki>5)
+
<html>*Digest(BBa_E0240, <nowiki>#</nowiki><span class="part_num">14</span></html<html>, <nowiki>#</nowiki><span class="part_num">17</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span></html<html>, <nowiki>#</nowiki><span class="part_num">5</span></html)
-
*Defrost(BBa_E1010, K325101, <nowiki>#</nowiki>20, <nowiki>#</nowiki>21, <nowiki>#</nowiki>22, <nowiki>#</nowiki>23)
+
<html>*Defrost(BBa_E1010, K325101, <nowiki>#</nowiki><span class="part_num">20</span></html<html>, <nowiki>#</nowiki><span class="part_num">21</span></html<html>, <nowiki>#</nowiki><span class="part_num">22</span></html<html>, <nowiki>#</nowiki><span class="part_num">23</span></html)
-
*Transformation(BBa_K145001, <nowiki>#</nowiki>20, <nowiki>#</nowiki>21, <nowiki>#</nowiki>22)
+
<html>*Transformation(BBa_K145001, <nowiki>#</nowiki><span class="part_num">20</span></html<html>, <nowiki>#</nowiki><span class="part_num">21</span></html<html>, <nowiki>#</nowiki><span class="part_num">22</span></html)
*Making LB plate(Cm,Km)
*Making LB plate(Cm,Km)
<html></div></html>
<html></div></html>
Line 329: Line 329:
<html><div class="labDay"></html>
<html><div class="labDay"></html>
==='11/07/08(Fri)===
==='11/07/08(Fri)===
-
*Miniprep(BBa_J23119, <nowiki>#</nowiki>2,  <nowiki>#</nowiki>10, <nowiki>#</nowiki>24)
+
<html>*Miniprep(BBa_J23119, <nowiki>#</nowiki><span class="part_num">2</span></html<html>,  <nowiki>#</nowiki><span class="part_num">10</span></html<html>, <nowiki>#</nowiki><span class="part_num">24</span></html)
<html></div></html>
<html></div></html>
<html><div class="labDay"></html>
<html><div class="labDay"></html>
==='11/07/11(Mon)===
==='11/07/11(Mon)===
-
*Gel extraction(<nowiki>#</nowiki>9 <nowiki>#</nowiki>14, <nowiki>#</nowiki>17)
+
<html>*Gel extraction(<nowiki>#</nowiki><span class="part_num">9</span></html<html> <nowiki>#</nowiki><span class="part_num">14</span></html<html>, <nowiki>#</nowiki><span class="part_num">17</span></html)
-
*Transformation(<nowiki>#</nowiki>1, <nowiki>#</nowiki>11, <nowiki>#</nowiki>20, <nowiki>#</nowiki>21, K325101, <nowiki>#</nowiki>22, <nowiki>#</nowiki>23)
+
<html>*Transformation(<nowiki>#</nowiki><span class="part_num">1</span></html<html>, <nowiki>#</nowiki><span class="part_num">11</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span></html<html>, <nowiki>#</nowiki><span class="part_num">21</span></html<html>, K325101, <nowiki>#</nowiki><span class="part_num">22</span></html<html>, <nowiki>#</nowiki><span class="part_num">23</span></html)
<html></div></html>
<html></div></html>
Line 345: Line 345:
<html><div class="labDay"></html>
<html><div class="labDay"></html>
==='11/07/13(Wed)===
==='11/07/13(Wed)===
-
*Frozen stock(<nowiki>#</nowiki>1(18A), <nowiki>#</nowiki>20(6G), <nowiki>#</nowiki>21(2O), <nowiki>#</nowiki>14(6N), <nowiki>#</nowiki>23(2F))
+
<html>*Frozen stock(<nowiki>#</nowiki><span class="part_num">1</span></html<html>(18A), <nowiki>#</nowiki><span class="part_num">20</span></html<html>(6G), <nowiki>#</nowiki><span class="part_num">21</span></html<html>(2O), <nowiki>#</nowiki><span class="part_num">14</span></html<html>(6N), <nowiki>#</nowiki><span class="part_num">23</span></html(2F))
-
*Picking up colony(<nowiki>#</nowiki>11)
+
<html>*Picking up colony(<nowiki>#</nowiki><span class="part_num">11</span></html)
-
*Gel extraction(B<nowiki>#</nowiki>3, <nowiki>#</nowiki>5)
+
<html>*Gel extraction(B<nowiki>#</nowiki><span class="part_num">3</span></html<html>, <nowiki>#</nowiki><span class="part_num">5</span></html)
-
*Digest (<nowiki>#</nowiki>2 SPcut)
+
<html>*Digest (<nowiki>#</nowiki><span class="part_num">2</span></html SPcut)
<html></div></html>
<html></div></html>
<html><div class="labDay"></html>
<html><div class="labDay"></html>
==='11/07/14(Thu)===
==='11/07/14(Thu)===
-
*Miniprep(<nowiki>#</nowiki>1, <nowiki>#</nowiki>11,  <nowiki>#</nowiki>20, <nowiki>#</nowiki>21, <nowiki>#</nowiki>22, <nowiki>#</nowiki>23)
+
<html>*Miniprep(<nowiki>#</nowiki><span class="part_num">1</span></html<html>, <nowiki>#</nowiki><span class="part_num">11</span></html<html>,  <nowiki>#</nowiki><span class="part_num">20</span></html<html>, <nowiki>#</nowiki><span class="part_num">21</span></html<html>, <nowiki>#</nowiki><span class="part_num">22</span></html<html>, <nowiki>#</nowiki><span class="part_num">23</span></html)
-
*Electrophoresis(<nowiki>#</nowiki>2)
+
<html>*Electrophoresis(<nowiki>#</nowiki><span class="part_num">2</span></html)
-
*Gel extraction(<nowiki>#</nowiki>2, <nowiki>#</nowiki>3, <nowiki>#</nowiki>5)
+
<html>*Gel extraction(<nowiki>#</nowiki><span class="part_num">2</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span></html<html>, <nowiki>#</nowiki><span class="part_num">5</span></html)
-
*Passafe(<nowiki>#</nowiki>11)
+
<html>*Passafe(<nowiki>#</nowiki><span class="part_num">11</span></html)
*Making LB+amp
*Making LB+amp
<html></div></html>
<html></div></html>
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<html><div class="labDay"></html>
<html><div class="labDay"></html>
==='11/07/15(Fri)===
==='11/07/15(Fri)===
-
*Ligation(<nowiki>#</nowiki>2-<nowiki>#</nowiki>9, <nowiki>#</nowiki>2-<nowiki>#</nowiki>3, <nowiki>#</nowiki>14-<nowiki>#</nowiki>5, <nowiki>#</nowiki>17-<nowiki>#</nowiki>5)
+
<html>*Ligation(<nowiki>#</nowiki><span class="part_num">2</span>-</html<html><nowiki>#</nowiki><span class="part_num">9</span></html<html>, <nowiki>#</nowiki><span class="part_num">2</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span></html<html>, <nowiki>#</nowiki><span class="part_num">14</span>-</html<html><nowiki>#</nowiki><span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">17</span>-</html<html><nowiki>#</nowiki><span class="part_num">5</span></html)
-
*Transformation(<nowiki>#</nowiki>2-<nowiki>#</nowiki>9, <nowiki>#</nowiki>2-<nowiki>#</nowiki>3, <nowiki>#</nowiki>14-<nowiki>#</nowiki>5, <nowiki>#</nowiki>17-<nowiki>#</nowiki>5)
+
<html>*Transformation(<nowiki>#</nowiki><span class="part_num">2</span>-</html<html><nowiki>#</nowiki><span class="part_num">9</span></html<html>, <nowiki>#</nowiki><span class="part_num">2</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span></html<html>, <nowiki>#</nowiki><span class="part_num">14</span>-</html<html><nowiki>#</nowiki><span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">17</span>-</html<html><nowiki>#</nowiki><span class="part_num">5</span></html)
*Dispensing Ligation Buffer
*Dispensing Ligation Buffer
-
*Frozen stock(<nowiki>#</nowiki>11)
+
<html>*Frozen stock(<nowiki>#</nowiki><span class="part_num">11</span></html)
<html></div></html>
<html></div></html>
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*Making Master plate
*Making Master plate
*Testing product of Miniprep
*Testing product of Miniprep
-
*Transformation (<nowiki>#</nowiki>2, <nowiki>#</nowiki>27, <nowiki>#</nowiki>28)
+
<html>*Transformation (<nowiki>#</nowiki><span class="part_num">2</span></html<html>, <nowiki>#</nowiki><span class="part_num">27</span></html<html>, <nowiki>#</nowiki><span class="part_num">28</span></html)
<html></div></html>
<html></div></html>
<html><div class="labDay"></html>
<html><div class="labDay"></html>
==='11/07/21(Thu)===
==='11/07/21(Thu)===
-
*Miniprep(<nowiki>#</nowiki>2-3, <nowiki>#</nowiki>2-9, <nowiki>#</nowiki>14-5, <nowiki>#</nowiki>17-5, <nowiki>#</nowiki>11, <nowiki>#</nowiki>20)
+
<html>*Miniprep(<nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span></html<html>, <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">9</span></html<html>, <nowiki>#</nowiki><span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">17</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">11</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span></html)
*Testing product
*Testing product
*Digest
*Digest
-
**SPcut : <nowiki>#</nowiki>20, <nowiki>#</nowiki>2-3
+
<html>**SPcut : <nowiki>#</nowiki><span class="part_num">20</span></html<html>, <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span></html
-
**XPcut : <nowiki>#</nowiki>10, <nowiki>#</nowiki>11, <nowiki>#</nowiki>14-5, <nowiki>#</nowiki>17-5
+
<html>**XPcut : <nowiki>#</nowiki><span class="part_num">10</span></html<html>, <nowiki>#</nowiki><span class="part_num">11</span></html<html>, <nowiki>#</nowiki><span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">17</span>-<span class="part_num">5</span></html
*Making TB
*Making TB
<html></div></html>
<html></div></html>
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<html><div class="labDay"></html>
<html><div class="labDay"></html>
==='11/07/22(Fri)===
==='11/07/22(Fri)===
-
*Frozen stock(<nowiki>#</nowiki>2, <nowiki>#</nowiki>2-3, <nowiki>#</nowiki>2-9, <nowiki>#</nowiki>14-5, <nowiki>#</nowiki>17-5)
+
<html>*Frozen stock(<nowiki>#</nowiki><span class="part_num">2</span></html<html>, <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span></html<html>, <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">9</span></html<html>, <nowiki>#</nowiki><span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">17</span>-<span class="part_num">5</span></html)
-
*Electrophoresis(<nowiki>#</nowiki>20_SP, <nowiki>#</nowiki>2-3_SP, <nowiki>#</nowiki>10_XP, <nowiki>#</nowiki>11_XP, <nowiki>#</nowiki>14-5_XP, <nowiki>#</nowiki>17-5_XP)
+
<html>*Electrophoresis(<nowiki>#</nowiki><span class="part_num">20</span></html<html>_SP, <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span></html<html>_SP, <nowiki>#</nowiki><span class="part_num">10</span></html<html>_XP, <nowiki>#</nowiki><span class="part_num">11</span></html<html>_XP, <nowiki>#</nowiki><span class="part_num">14</span>-<span class="part_num">5</span></html<html>_XP, <nowiki>#</nowiki><span class="part_num">17</span>-<span class="part_num">5</span></html_XP)
*Digest
*Digest
-
**SPcut : <nowiki>#</nowiki>20
+
<html>**SPcut : <nowiki>#</nowiki><span class="part_num">20</span></html
-
**XPcut : <nowiki>#</nowiki>10, <nowiki>#</nowiki>11, <nowiki>#</nowiki>14-5, <nowiki>#</nowiki>17-5
+
<html>**XPcut : <nowiki>#</nowiki><span class="part_num">10</span></html<html>, <nowiki>#</nowiki><span class="part_num">11</span></html<html>, <nowiki>#</nowiki><span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">17</span>-<span class="part_num">5</span></html
-
*Transformation(<nowiki>#</nowiki>27, <nowiki>#</nowiki>28, product of Miniprep 07/20)
+
<html>*Transformation(<nowiki>#</nowiki><span class="part_num">27</span></html<html>, <nowiki>#</nowiki><span class="part_num">28</span></html, product of Miniprep 07/20)
<html></div></html>
<html></div></html>
<html><div class="labDay"></html>
<html><div class="labDay"></html>
==='11/07/25(Mon)===
==='11/07/25(Mon)===
-
*Colony check(<nowiki>#</nowiki>2, <nowiki>#</nowiki>2-9)
+
<html>*Colony check(<nowiki>#</nowiki><span class="part_num">2</span></html<html>, <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">9</span></html)
-
*Gel Extraction(<nowiki>#</nowiki>20_SP, <nowiki>#</nowiki>10_XP, <nowiki>#</nowiki>11_XP, <nowiki>#</nowiki>14-5_XP, <nowiki>#</nowiki>17-5_XP)
+
<html>*Gel Extraction(<nowiki>#</nowiki><span class="part_num">20</span></html<html>_SP, <nowiki>#</nowiki><span class="part_num">10</span></html<html>_XP, <nowiki>#</nowiki><span class="part_num">11</span></html<html>_XP, <nowiki>#</nowiki><span class="part_num">14</span>-<span class="part_num">5</span></html<html>_XP, <nowiki>#</nowiki><span class="part_num">17</span>-<span class="part_num">5</span></html_XP)
-
*Ligation and Transformation(<nowiki>#</nowiki>20-<nowiki>#</nowiki>9, <nowiki>#</nowiki>3-<nowiki>#</nowiki>11, <nowiki>#</nowiki>3-<nowiki>#</nowiki>14-5, <nowiki>#</nowiki>3-<nowiki>#</nowiki>17-5)
+
<html>*Ligation and Transformation(<nowiki>#</nowiki><span class="part_num">20</span>-</html<html><nowiki>#</nowiki><span class="part_num">9</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-</html<html><nowiki>#</nowiki><span class="part_num">11</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-</html<html><nowiki>#</nowiki><span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-</html<html><nowiki>#</nowiki><span class="part_num">17</span>-<span class="part_num">5</span></html)
*Defrost Primer(200×, 10×)
*Defrost Primer(200×, 10×)
*Dispensing PCR Mix
*Dispensing PCR Mix
Line 414: Line 414:
<html><div class="labDay"></html>
<html><div class="labDay"></html>
==='11/07/26(Tue)===
==='11/07/26(Tue)===
-
*Picking up colony and making master plate(<nowiki>#</nowiki>20-9, <nowiki>#</nowiki>3-11, <nowiki>#</nowiki>3-14-5, <nowiki>#</nowiki>3-17-5)
+
<html>*Picking up colony and making master plate(<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">9</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">11</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html)
-
*Colony PCR(<nowiki>#</nowiki>20-9, <nowiki>#</nowiki>3-11, <nowiki>#</nowiki>3-14-5, <nowiki>#</nowiki>3-17-5)
+
<html>*Colony PCR(<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">9</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">11</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html)
-
*Digest(<nowiki>#</nowiki>14-5 XPcut,Ecut, <nowiki>#</nowiki>22 SPcut, <nowiki>#</nowiki>23 XPcut)
+
<html>*Digest(<nowiki>#</nowiki><span class="part_num">14</span>-<span class="part_num">5</span></html<html> XPcut,Ecut, <nowiki>#</nowiki><span class="part_num">22</span></html<html> SPcut, <nowiki>#</nowiki><span class="part_num">23</span></html XPcut)
-
*Ligation(<nowiki>#</nowiki>3-<nowiki>#</nowiki>14-5(Re), <nowiki>#</nowiki>3(Negative control))
+
<html>*Ligation(<nowiki>#</nowiki><span class="part_num">3</span>-</html<html><nowiki>#</nowiki><span class="part_num">14</span>-<span class="part_num">5</span></html<html>(Re), <nowiki>#</nowiki><span class="part_num">3</span></html(Negative control))
-
*Transformation(<nowiki>#</nowiki>15, <nowiki>#</nowiki>27, <nowiki>#</nowiki>28, <nowiki>#</nowiki>30, <nowiki>#</nowiki>3-14-5(Re), <nowiki>#</nowiki>3(Negative control))
+
<html>*Transformation(<nowiki>#</nowiki><span class="part_num">15</span></html<html>, <nowiki>#</nowiki><span class="part_num">27</span></html<html>, <nowiki>#</nowiki><span class="part_num">28</span></html<html>, <nowiki>#</nowiki><span class="part_num">30</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>(Re), <nowiki>#</nowiki><span class="part_num">3</span></html(Negative control))
*Making reagent for TB(KOH, CaCl2, KCl, MnCl2)
*Making reagent for TB(KOH, CaCl2, KCl, MnCl2)
<html></div></html>
<html></div></html>
Line 424: Line 424:
<html><div class="labDay"></html>
<html><div class="labDay"></html>
==='11/07/27(Wed)===
==='11/07/27(Wed)===
-
*Miniprep(<nowiki>#</nowiki>1, <nowiki>#</nowiki>2, <nowiki>#</nowiki>3, <nowiki>#</nowiki>10, <nowiki>#</nowiki>22, <nowiki>#</nowiki>24, <nowiki>#</nowiki>20-9, <nowiki>#</nowiki>3-11, <nowiki>#</nowiki>3-17-5)
+
<html>*Miniprep(<nowiki>#</nowiki><span class="part_num">1</span></html<html>, <nowiki>#</nowiki><span class="part_num">2</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span></html<html>, <nowiki>#</nowiki><span class="part_num">10</span></html<html>, <nowiki>#</nowiki><span class="part_num">22</span></html<html>, <nowiki>#</nowiki><span class="part_num">24</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">9</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">11</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html)
*Electrophoresis
*Electrophoresis
<html></div></html>
<html></div></html>
Line 430: Line 430:
<html><div class="labDay"></html>
<html><div class="labDay"></html>
==='11/07/28(Thu)===
==='11/07/28(Thu)===
-
*Gel extraction(<nowiki>#</nowiki>14-5_XP, <nowiki>#</nowiki>22_SP, <nowiki>#</nowiki>23_XP)
+
<html>*Gel extraction(<nowiki>#</nowiki><span class="part_num">14</span>-<span class="part_num">5</span></html<html>_XP, <nowiki>#</nowiki><span class="part_num">22</span></html<html>_SP, <nowiki>#</nowiki><span class="part_num">23</span></html_XP)
*Digest
*Digest
-
**SPcut : <nowiki>#</nowiki>1,<nowiki>#</nowiki>2, <nowiki>#</nowiki>3, <nowiki>#</nowiki>24
+
<html>**SPcut : <nowiki>#</nowiki><span class="part_num">1</span></html<html>,<nowiki>#</nowiki><span class="part_num">2</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span></html<html>, <nowiki>#</nowiki><span class="part_num">24</span></html
-
**EScut : <nowiki>#</nowiki>3-11
+
<html>**EScut : <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">11</span></html
-
**XPcut : <nowiki>#</nowiki>3-17-5
+
<html>**XPcut : <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html
-
*Ligation(<nowiki>#</nowiki>3-<nowiki>#</nowiki>14-5)
+
<html>*Ligation(<nowiki>#</nowiki><span class="part_num">3</span>-</html<html><nowiki>#</nowiki><span class="part_num">14</span>-<span class="part_num">5</span></html)
*Making TB bugger, LB plate, 0.3% LB plate
*Making TB bugger, LB plate, 0.3% LB plate
<html></div></html>
<html></div></html>
Line 442: Line 442:
==='11/07/29(Fri)===
==='11/07/29(Fri)===
*Cloning(lexA, cheZ)
*Cloning(lexA, cheZ)
-
*Colony PCR(<nowiki>#</nowiki>3-<nowiki>#</nowiki>14-5)
+
<html>*Colony PCR(<nowiki>#</nowiki><span class="part_num">3</span>-</html<html><nowiki>#</nowiki><span class="part_num">14</span>-<span class="part_num">5</span></html)
-
*Gel extraction(<nowiki>#</nowiki>1_SP, <nowiki>#</nowiki>2_SP, <nowiki>#</nowiki>3_SP, <nowiki>#</nowiki>24_SP, <nowiki>#</nowiki>3-11_ES, <nowiki>#</nowiki>3-17-5_XP, lexA, cheZ PCR product)
+
<html>*Gel extraction(<nowiki>#</nowiki><span class="part_num">1</span></html<html>_SP, <nowiki>#</nowiki><span class="part_num">2</span></html<html>_SP, <nowiki>#</nowiki><span class="part_num">3</span></html<html>_SP, <nowiki>#</nowiki><span class="part_num">24</span></html<html>_SP, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">11</span></html<html>_ES, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html_XP, lexA, cheZ PCR product)
-
*Miniprep(<nowiki>#</nowiki>30)
+
<html>*Miniprep(<nowiki>#</nowiki><span class="part_num">30</span></html)
*Digest(lexA, cheZ PCR product XP cut)
*Digest(lexA, cheZ PCR product XP cut)
<html></div></html>
<html></div></html>
Line 453: Line 453:
<html><div class="labDay"></html>
<html><div class="labDay"></html>
==='11/08/01(Mon)===
==='11/08/01(Mon)===
-
*Nanodrop(<nowiki>#</nowiki>3-11(1), <nowiki>#</nowiki>1, <nowiki>#</nowiki>3, <nowiki>#</nowiki>24, <nowiki>#</nowiki>2, <nowiki>#</nowiki>3-17-5(4)M<nowiki>#</nowiki>30)
+
<html>*Nanodrop(<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">11</span></html<html>(1), <nowiki>#</nowiki><span class="part_num">1</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span></html<html>, <nowiki>#</nowiki><span class="part_num">24</span></html<html>, <nowiki>#</nowiki><span class="part_num">2</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>(4)M<nowiki>#</nowiki><span class="part_num">30</span></html)
-
*Digest(<nowiki>#</nowiki>3 SPcut, <nowiki>#</nowiki>5 EXcut, <nowiki>#</nowiki>9 XPcut, <nowiki>#</nowiki>30 XP cut)
+
<html>*Digest(<nowiki>#</nowiki><span class="part_num">3</span></html<html> SPcut, <nowiki>#</nowiki><span class="part_num">5</span></html<html> EXcut, <nowiki>#</nowiki><span class="part_num">9</span></html<html> XPcut, <nowiki>#</nowiki><span class="part_num">30</span></html XP cut)
*Cloning(lexA, cheZ)
*Cloning(lexA, cheZ)
-
*Gel extraction(<nowiki>#</nowiki>3, <nowiki>#</nowiki>9, <nowiki>#</nowiki>30, pSB1A2)
+
<html>*Gel extraction(<nowiki>#</nowiki><span class="part_num">3</span></html<html>, <nowiki>#</nowiki><span class="part_num">9</span></html<html>, <nowiki>#</nowiki><span class="part_num">30</span></html, pSB1A2)
-
*Ligation(<nowiki>#</nowiki>2-<nowiki>#</nowiki>3-17-5, <nowiki>#</nowiki>3-11-<nowiki>#</nowiki>5, <nowiki>#</nowiki>14-<nowiki>#</nowiki>5, <nowiki>#</nowiki>3-<nowiki>#</nowiki>23, <nowiki>#</nowiki>22-<nowiki>#</nowiki>9, <nowiki>#</nowiki>3-<nowiki>#</nowiki>30)
+
<html>*Ligation(<nowiki>#</nowiki><span class="part_num">2</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">11</span>-</html<html><nowiki>#</nowiki><span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">14</span>-</html<html><nowiki>#</nowiki><span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-</html<html><nowiki>#</nowiki><span class="part_num">23</span></html<html>, <nowiki>#</nowiki><span class="part_num">22</span>-</html<html><nowiki>#</nowiki><span class="part_num">9</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-</html<html><nowiki>#</nowiki><span class="part_num">30</span></html)
-
*Transformation(<nowiki>#</nowiki>2-<nowiki>#</nowiki>3-17-5, <nowiki>#</nowiki>3-11-<nowiki>#</nowiki>5, <nowiki>#</nowiki>14-<nowiki>#</nowiki>5, <nowiki>#</nowiki>3-<nowiki>#</nowiki>23, <nowiki>#</nowiki>22-<nowiki>#</nowiki>9, <nowiki>#</nowiki>3-<nowiki>#</nowiki>30, <nowiki>#</nowiki>27(IPTG), <nowiki>#</nowiki>28)
+
<html>*Transformation(<nowiki>#</nowiki><span class="part_num">2</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">11</span>-</html<html><nowiki>#</nowiki><span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">14</span>-</html<html><nowiki>#</nowiki><span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-</html<html><nowiki>#</nowiki><span class="part_num">23</span></html<html>, <nowiki>#</nowiki><span class="part_num">22</span>-</html<html><nowiki>#</nowiki><span class="part_num">9</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-</html<html><nowiki>#</nowiki><span class="part_num">30</span></html<html>, <nowiki>#</nowiki><span class="part_num">27</span></html<html>(IPTG), <nowiki>#</nowiki><span class="part_num">28</span></html)
<html></div></html>
<html></div></html>
<html><div class="labDay"></html>
<html><div class="labDay"></html>
==='11/08/02(Tue)===
==='11/08/02(Tue)===
-
*Colony PCR(<nowiki>#</nowiki>2-<nowiki>#</nowiki>3-17-5, <nowiki>#</nowiki>3-11-<nowiki>#</nowiki>5, <nowiki>#</nowiki>14-<nowiki>#</nowiki>5, <nowiki>#</nowiki>3-<nowiki>#</nowiki>23, <nowiki>#</nowiki>22-<nowiki>#</nowiki>9)
+
<html>*Colony PCR(<nowiki>#</nowiki><span class="part_num">2</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">11</span>-</html<html><nowiki>#</nowiki><span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">14</span>-</html<html><nowiki>#</nowiki><span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-</html<html><nowiki>#</nowiki><span class="part_num">23</span></html<html>, <nowiki>#</nowiki><span class="part_num">22</span>-</html<html><nowiki>#</nowiki><span class="part_num">9</span></html)
-
*Cloning(PCR)(<nowiki>#</nowiki>27, <nowiki>#</nowiki>28)
+
<html>*Cloning(PCR)(<nowiki>#</nowiki><span class="part_num">27</span></html<html>, <nowiki>#</nowiki><span class="part_num">28</span></html)
*Gel extraction
*Gel extraction
-
*PCR_2nd(lexA, cheZ, <nowiki>#</nowiki>27, <nowiki>#</nowiki>28)
+
<html>*PCR_2nd(lexA, cheZ, <nowiki>#</nowiki><span class="part_num">27</span></html<html>, <nowiki>#</nowiki><span class="part_num">28</span></html)
-
*Digest (<nowiki>#</nowiki>30 again)
+
<html>*Digest (<nowiki>#</nowiki><span class="part_num">30</span></html again)
*Making competent cell(cheZ-, Wild Type)
*Making competent cell(cheZ-, Wild Type)
*Miniprep
*Miniprep
Line 474: Line 474:
<html><div class="labDay"></html>
<html><div class="labDay"></html>
==='11/08/04(Thu)===
==='11/08/04(Thu)===
-
*Electrophoresis(product of ligation <nowiki>#</nowiki>2-3-17-5(2), <nowiki>#</nowiki>3-11-5(1,2), <nowiki>#</nowiki>14-5(2), <nowiki>#</nowiki>22-9(1,2,3))
+
<html>*Electrophoresis(product of ligation <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>(2), <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html<html>(1,2), <nowiki>#</nowiki><span class="part_num">14</span>-<span class="part_num">5</span></html<html>(2), <nowiki>#</nowiki><span class="part_num">22</span>-<span class="part_num">9</span></html(1,2,3))
-
*Frozen stock(<nowiki>#</nowiki>2-3-17-5(2), <nowiki>#</nowiki>3-11-5(1,2), <nowiki>#</nowiki>14-5(2), <nowiki>#</nowiki>22-9(1,2))
+
<html>*Frozen stock(<nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>(2), <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html<html>(1,2), <nowiki>#</nowiki><span class="part_num">14</span>-<span class="part_num">5</span></html<html>(2), <nowiki>#</nowiki><span class="part_num">22</span>-<span class="part_num">9</span></html(1,2))
*Making Gel
*Making Gel
-
*Digest(<nowiki>#</nowiki>23 XPcut)
+
<html>*Digest(<nowiki>#</nowiki><span class="part_num">23</span></html XPcut)
-
*IPTG induct(<nowiki>#</nowiki>20-9)
+
<html>*IPTG induct(<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">9</span></html)
<html></div></html>
<html></div></html>
<html><div class="labDay"></html>
<html><div class="labDay"></html>
==='11/08/05(Fri)===
==='11/08/05(Fri)===
-
*Digest(<nowiki>#</nowiki>14-5(2) XPcut, <nowiki>#</nowiki>3-11-5(1) XPcut)
+
<html>*Digest(<nowiki>#</nowiki><span class="part_num">14</span>-<span class="part_num">5</span></html<html>(2) XPcut, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html(1) XPcut)
-
*Cloning(PCR)(<nowiki>#</nowiki>27, <nowiki>#</nowiki>28, lexA, cheZ)
+
<html>*Cloning(PCR)(<nowiki>#</nowiki><span class="part_num">27</span></html<html>, <nowiki>#</nowiki><span class="part_num">28</span></html, lexA, cheZ)
<html></div></html>
<html></div></html>
<html><div class="labDay"></html>
<html><div class="labDay"></html>
==='11/08/08(Mon)===
==='11/08/08(Mon)===
-
*Defrost Frozen stock, Miniprep, Nanodrop and Electrophoresis(<nowiki>#</nowiki>5, <nowiki>#</nowiki>20, <nowiki>#</nowiki>23, <nowiki>#</nowiki>30)
+
<html>*Defrost Frozen stock, Miniprep, Nanodrop and Electrophoresis(<nowiki>#</nowiki><span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span></html<html>, <nowiki>#</nowiki><span class="part_num">23</span></html<html>, <nowiki>#</nowiki><span class="part_num">30</span></html)
*Making Gel
*Making Gel
*Digest
*Digest
-
**XPcut : <nowiki>#</nowiki>27, <nowiki>#</nowiki>28, cheZ, lexA, <nowiki>#</nowiki>3-11-5(1), <nowiki>#</nowiki>23,<nowiki>#</nowiki>30
+
<html>**XPcut : <nowiki>#</nowiki><span class="part_num">27</span></html<html>, <nowiki>#</nowiki><span class="part_num">28</span></html<html>, cheZ, lexA, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html<html>(1), <nowiki>#</nowiki><span class="part_num">23</span></html<html>,<nowiki>#</nowiki><span class="part_num">30</span></html
-
**EScut : <nowiki>#</nowiki>6
+
<html>**EScut : <nowiki>#</nowiki><span class="part_num">6</span></html
-
**EXcut : <nowiki>#</nowiki>7
+
<html>**EXcut : <nowiki>#</nowiki><span class="part_num">7</span></html
-
**SPcut : <nowiki>#</nowiki>7,<nowiki>#</nowiki>20
+
<html>**SPcut : <nowiki>#</nowiki><span class="part_num">7</span></html<html>,<nowiki>#</nowiki><span class="part_num">20</span></html
-
*Defrost Frozen stock(<nowiki>#</nowiki>5, <nowiki>#</nowiki>14-5(2), <nowiki>#</nowiki>3-11-5(1))
+
<html>*Defrost Frozen stock(<nowiki>#</nowiki><span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">14</span>-<span class="part_num">5</span></html<html>(2), <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html(1))
<html></div></html>
<html></div></html>
<html><div class="labDay"></html>
<html><div class="labDay"></html>
==='11/08/09(Tue)===
==='11/08/09(Tue)===
-
*Miniprep, Electrophoresis and Digest(<nowiki>#</nowiki>5, <nowiki>#</nowiki>14-5(2), <nowiki>#</nowiki>3-11-5(1))
+
<html>*Miniprep, Electrophoresis and Digest(<nowiki>#</nowiki><span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">14</span>-<span class="part_num">5</span></html<html>(2), <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html(1))
-
*Gel extraction and Nanodrop(<nowiki>#</nowiki>6, <nowiki>#</nowiki>27, <nowiki>#</nowiki>8, cheZ, lexA③, <nowiki>#</nowiki>3-11-5(1), <nowiki>#</nowiki>23, <nowiki>#</nowiki>7_EX, <nowiki>#</nowiki>20, <nowiki>#</nowiki>7_SP)
+
<html>*Gel extraction and Nanodrop(<nowiki>#</nowiki><span class="part_num">6</span></html<html>, <nowiki>#</nowiki><span class="part_num">27</span></html<html>, <nowiki>#</nowiki><span class="part_num">8</span></html<html>, cheZ, lexA③, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html<html>(1), <nowiki>#</nowiki><span class="part_num">23</span></html<html>, <nowiki>#</nowiki><span class="part_num">7</span></html<html>_EX, <nowiki>#</nowiki><span class="part_num">20</span></html<html>, <nowiki>#</nowiki><span class="part_num">7</span></html_SP)
-
*Ligation(<nowiki>#</nowiki>27-psB1A2, <nowiki>#</nowiki>3-27, <nowiki>#</nowiki>20-28, <nowiki>#</nowiki>28-psB1A2, <nowiki>#</nowiki>3-29, <nowiki>#</nowiki>29-psB1A2, <nowiki>#</nowiki>31-psB1A2, <nowiki>#</nowiki>3-<nowiki>#</nowiki>23, <nowiki>#</nowiki>1-<nowiki>#</nowiki>3-11-5(1), <nowiki>#</nowiki>2-<nowiki>#</nowiki>3-11-5(1), <nowiki>#</nowiki>24-<nowiki>#</nowiki>3-11-5(1), <nowiki>#</nowiki>3-<nowiki>#</nowiki>30)
+
<html>*Ligation(<nowiki>#</nowiki><span class="part_num">27</span>-</html<html>psB1A2, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">28</span></html<html>, <nowiki>#</nowiki><span class="part_num">28</span>-</html<html>psB1A2, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">29</span></html<html>, <nowiki>#</nowiki><span class="part_num">29</span>-</html<html>psB1A2, <nowiki>#</nowiki><span class="part_num">31</span>-</html<html>psB1A2, <nowiki>#</nowiki><span class="part_num">3</span>-</html<html><nowiki>#</nowiki><span class="part_num">23</span></html<html>, <nowiki>#</nowiki><span class="part_num">1</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html<html>(1), <nowiki>#</nowiki><span class="part_num">2</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html<html>(1), <nowiki>#</nowiki><span class="part_num">24</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html<html>(1), <nowiki>#</nowiki><span class="part_num">3</span>-</html<html><nowiki>#</nowiki><span class="part_num">30</span></html)
*Making LB plate
*Making LB plate
<html></div></html>
<html></div></html>
Line 509: Line 509:
<html><div class="labDay"></html>
<html><div class="labDay"></html>
==='11/08/10(Wed)===
==='11/08/10(Wed)===
-
*Colony PCR(<nowiki>#</nowiki>27-pSB1A2, <nowiki>#</nowiki>3-27, <nowiki>#</nowiki>20-28, <nowiki>#</nowiki>28-psB1A2, <nowiki>#</nowiki>3-29, <nowiki>#</nowiki>29-psB1A2, <nowiki>#</nowiki>31-pSB1A2, <nowiki>#</nowiki>3-<nowiki>#</nowiki>23, <nowiki>#</nowiki>1-<nowiki>#</nowiki>3-11-5(1), <nowiki>#</nowiki>2-<nowiki>#</nowiki>3-11-5(1), <nowiki>#</nowiki>24-<nowiki>#</nowiki>3-11-5(1), <nowiki>#</nowiki>3-<nowiki>#</nowiki>30))
+
<html>*Colony PCR(<nowiki>#</nowiki><span class="part_num">27</span>-</html<html>pSB1A2, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">28</span></html<html>, <nowiki>#</nowiki><span class="part_num">28</span>-</html<html>psB1A2, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">29</span></html<html>, <nowiki>#</nowiki><span class="part_num">29</span>-</html<html>psB1A2, <nowiki>#</nowiki><span class="part_num">31</span>-</html<html>pSB1A2, <nowiki>#</nowiki><span class="part_num">3</span>-</html<html><nowiki>#</nowiki><span class="part_num">23</span></html<html>, <nowiki>#</nowiki><span class="part_num">1</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html<html>(1), <nowiki>#</nowiki><span class="part_num">2</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html<html>(1), <nowiki>#</nowiki><span class="part_num">24</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html<html>(1), <nowiki>#</nowiki><span class="part_num">3</span>-</html<html><nowiki>#</nowiki><span class="part_num">30</span></html))
*Cloning(lexA, cheZ)
*Cloning(lexA, cheZ)
*Digest
*Digest
-
**EScut : <nowiki>#</nowiki>6
+
<html>**EScut : <nowiki>#</nowiki><span class="part_num">6</span></html
-
**EXcut : <nowiki>#</nowiki>7
+
<html>**EXcut : <nowiki>#</nowiki><span class="part_num">7</span></html
-
**SPcut : <nowiki>#</nowiki>1, <nowiki>#</nowiki>2, <nowiki>#</nowiki>3, <nowiki>#</nowiki>7, <nowiki>#</nowiki>20
+
<html>**SPcut : <nowiki>#</nowiki><span class="part_num">1</span></html<html>, <nowiki>#</nowiki><span class="part_num">2</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span></html<html>, <nowiki>#</nowiki><span class="part_num">7</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span></html
-
**XPcut : <nowiki>#</nowiki>23
+
<html>**XPcut : <nowiki>#</nowiki><span class="part_num">23</span></html
*Defrost Primer
*Defrost Primer
<html></div></html>
<html></div></html>
Line 521: Line 521:
<html><div class="labDay"></html>
<html><div class="labDay"></html>
==='11/08/11(Thu)===
==='11/08/11(Thu)===
-
*Gel extraction(<nowiki>#</nowiki>30, <nowiki>#</nowiki>14-5(insert,vector), <nowiki>#</nowiki>5, <nowiki>#</nowiki>3-11-5, cheZ, lexA)
+
<html>*Gel extraction(<nowiki>#</nowiki><span class="part_num">30</span></html<html>, <nowiki>#</nowiki><span class="part_num">14</span>-<span class="part_num">5</span></html<html>(insert,vector), <nowiki>#</nowiki><span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html, cheZ, lexA)
*Cloning(sulAp, uvrAp)
*Cloning(sulAp, uvrAp)
-
*Miniprep(<nowiki>#</nowiki>3, <nowiki>#</nowiki>20-28, <nowiki>#</nowiki>31, <nowiki>#</nowiki>24-3-11-5, <nowiki>#</nowiki>3-30)
+
<html>*Miniprep(<nowiki>#</nowiki><span class="part_num">3</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">28</span></html<html>, <nowiki>#</nowiki><span class="part_num">31</span></html<html>, <nowiki>#</nowiki><span class="part_num">24</span>-<span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">30</span></html)
<html></div></html>
<html></div></html>
<html><div class="labDay"></html>
<html><div class="labDay"></html>
==='11/08/12(Fri)===
==='11/08/12(Fri)===
-
*Colony PCR(<nowiki>#</nowiki>3-14-5(2), <nowiki>#</nowiki>6-5, <nowiki>#</nowiki>3-23)
+
<html>*Colony PCR(<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>(2), <nowiki>#</nowiki><span class="part_num">6</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">23</span></html)
*Cloning(nested-PCR)(uvrAp, sulAp)
*Cloning(nested-PCR)(uvrAp, sulAp)
*Check Electrophoresis
*Check Electrophoresis
-
**8/11 PCR product:<nowiki>#</nowiki>27, <nowiki>#</nowiki>28
+
<html>**8/11 PCR product:<nowiki>#</nowiki><span class="part_num">27</span></html<html>, <nowiki>#</nowiki><span class="part_num">28</span></html
-
**Miniprep product:<nowiki>#</nowiki>3-14-5(2), <nowiki>#</nowiki>5
+
<html>**Miniprep product:<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>(2), <nowiki>#</nowiki><span class="part_num">5</span></html
-
*Digest(<nowiki>#</nowiki>5 EXcut, <nowiki>#</nowiki>14 EScut)
+
<html>*Digest(<nowiki>#</nowiki><span class="part_num">5</span></html<html> EXcut, <nowiki>#</nowiki><span class="part_num">14</span></html EScut)
*Gel extraction
*Gel extraction
-
**8/11 digest product : <nowiki>#</nowiki>5, <nowiki>#</nowiki>14-5, <nowiki>#</nowiki>3-30, cheZ, lexA
+
<html>**8/11 digest product : <nowiki>#</nowiki><span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">30</span></html, cheZ, lexA
-
**8/11 PCR product : <nowiki>#</nowiki>27, <nowiki>#</nowiki>28
+
<html>**8/11 PCR product : <nowiki>#</nowiki><span class="part_num">27</span></html<html>, <nowiki>#</nowiki><span class="part_num">28</span></html
**8/12 nested-PCR product : sulAp, uvrAp
**8/12 nested-PCR product : sulAp, uvrAp
-
*Colony PCR (re) (<nowiki>#</nowiki>13-14-5)
+
<html>*Colony PCR (re) (<nowiki>#</nowiki><span class="part_num">13</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html)
-
*Miniprep(ligation product : <nowiki>#</nowiki>6-5, <nowiki>#</nowiki>3-23)
+
<html>*Miniprep(ligation product : <nowiki>#</nowiki><span class="part_num">6</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">23</span></html)
*Cloning(hotstart-PCR: uvrBp , cheZ)
*Cloning(hotstart-PCR: uvrBp , cheZ)
*Digest
*Digest
-
**XPcut:<nowiki>#</nowiki>27, <nowiki>#</nowiki>28, <nowiki>#</nowiki>6-5
+
<html>**XPcut:<nowiki>#</nowiki><span class="part_num">27</span></html<html>, <nowiki>#</nowiki><span class="part_num">28</span></html<html>, <nowiki>#</nowiki><span class="part_num">6</span>-<span class="part_num">5</span></html
-
**EScut: sulAp, uvrAp, <nowiki>#</nowiki>3-23
+
<html>**EScut: sulAp, uvrAp, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">23</span></html
<html></div></html>
<html></div></html>
<html><div class="labDay"></html>
<html><div class="labDay"></html>
==='11/08/15(Mon)===
==='11/08/15(Mon)===
-
*Gel extraction(from previous digest products(8/12) : <nowiki>#</nowiki>27, <nowiki>#</nowiki>28, <nowiki>#</nowiki>33, <nowiki>#</nowiki>34, <nowiki>#</nowiki>4, <nowiki>#</nowiki>3-23)
+
<html>*Gel extraction(from previous digest products(8/12) : <nowiki>#</nowiki><span class="part_num">27</span></html<html>, <nowiki>#</nowiki><span class="part_num">28</span></html<html>, <nowiki>#</nowiki><span class="part_num">33</span></html<html>, <nowiki>#</nowiki><span class="part_num">34</span></html<html>, <nowiki>#</nowiki><span class="part_num">4</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">23</span></html)
*Digest
*Digest
**XPcut: cheZ, uvrBp(PCR products)  
**XPcut: cheZ, uvrBp(PCR products)  
-
**EScut: <nowiki>#</nowiki>3-11-5 (to obtain pSB1AK3 EScut)
+
<html>**EScut: <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html (to obtain pSB1AK3 EScut)
*Assay of Cell lysis construction(pLuc-Lysis device) inducted by IPTG
*Assay of Cell lysis construction(pLuc-Lysis device) inducted by IPTG
*Making Lysis buffer, Agarose gel
*Making Lysis buffer, Agarose gel
-
*Gel extraction(from digest products XPcut: cheZ, uvrBp(PCR products) EScut: <nowiki>#</nowiki>3-11-5 to obtain pSB1AK3 EScut)
+
<html>*Gel extraction(from digest products XPcut: cheZ, uvrBp(PCR products) EScut: <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html to obtain pSB1AK3 EScut)
-
*Ligation(<nowiki>#</nowiki>3-<nowiki>#</nowiki>14-5, <nowiki>#</nowiki>24-<nowiki>#</nowiki>3-17-5, <nowiki>#</nowiki>24-<nowiki>#</nowiki>3-11-5, <nowiki>#</nowiki>20-<nowiki>#</nowiki>28, <nowiki>#</nowiki>3-<nowiki>#</nowiki>27, <nowiki>#</nowiki>3-<nowiki>#</nowiki>29, <nowiki>#</nowiki>3-23-<nowiki>#</nowiki>5, <nowiki>#</nowiki>33-pSB1AK3, <nowiki>#</nowiki>34--pSB1AK3, <nowiki>#</nowiki>35--pSB1AK3)
+
<html>*Ligation(<nowiki>#</nowiki><span class="part_num">3</span>-</html<html><nowiki>#</nowiki><span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">24</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">24</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span>-</html<html><nowiki>#</nowiki><span class="part_num">28</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-</html<html><nowiki>#</nowiki><span class="part_num">27</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-</html<html><nowiki>#</nowiki><span class="part_num">29</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">23</span>-</html<html><nowiki>#</nowiki><span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">33</span>-</html<html>pSB1AK3, <nowiki>#</nowiki><span class="part_num">34</span>--</html<html>pSB1AK3, <nowiki>#</nowiki><span class="part_num">35</span>--</htmlpSB1AK3)
-
*Transformation(ligation products:WT, <nowiki>#</nowiki>2-9:cheZ-, <nowiki>#</nowiki>14, <nowiki>#</nowiki>17) -> 37 incubation
+
<html>*Transformation(ligation products:WT, <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">9</span></html<html>:cheZ-, <nowiki>#</nowiki><span class="part_num">14</span></html<html>, <nowiki>#</nowiki><span class="part_num">17</span></html) -> 37 incubation
<html></div></html>
<html></div></html>
<html><div class="labDay"></html>
<html><div class="labDay"></html>
==='11/08/16(Tue)===
==='11/08/16(Tue)===
-
*Colony PCR(<nowiki>#</nowiki>3-<nowiki>#</nowiki>14-5, <nowiki>#</nowiki>24-<nowiki>#</nowiki>3-17-5, <nowiki>#</nowiki>20-<nowiki>#</nowiki>28, <nowiki>#</nowiki>3-<nowiki>#</nowiki>27, <nowiki>#</nowiki>3-<nowiki>#</nowiki>29, <nowiki>#</nowiki>3-23-<nowiki>#</nowiki>5)
+
<html>*Colony PCR(<nowiki>#</nowiki><span class="part_num">3</span>-</html<html><nowiki>#</nowiki><span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">24</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span>-</html<html><nowiki>#</nowiki><span class="part_num">28</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-</html<html><nowiki>#</nowiki><span class="part_num">27</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-</html<html><nowiki>#</nowiki><span class="part_num">29</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">23</span>-</html<html><nowiki>#</nowiki><span class="part_num">5</span></html)
-
*Culture (<nowiki>#</nowiki>20-<nowiki>#</nowiki>28, <nowiki>#</nowiki>5, <nowiki>#</nowiki>14, <nowiki>#</nowiki>17, <nowiki>#</nowiki>2-9, <nowiki>#</nowiki>2-4, <nowiki>#</nowiki>2-3-17-5, <nowiki>#</nowiki>1, <nowiki>#</nowiki>2)
+
<html>*Culture (<nowiki>#</nowiki><span class="part_num">20</span>-</html<html><nowiki>#</nowiki><span class="part_num">28</span></html<html>, <nowiki>#</nowiki><span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">14</span></html<html>, <nowiki>#</nowiki><span class="part_num">17</span></html<html>, <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">9</span></html<html>, <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">4</span></html<html>, <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">1</span></html<html>, <nowiki>#</nowiki><span class="part_num">2</span></html)
-
*Incubation (<nowiki>#</nowiki>24-<nowiki>#</nowiki>3-11-5, <nowiki>#</nowiki>33-pSB1AK3, <nowiki>#</nowiki>34-pSB1AK3, <nowiki>#</nowiki>35-pSB1AK3)
+
<html>*Incubation (<nowiki>#</nowiki><span class="part_num">24</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">33</span>-</html<html>pSB1AK3, <nowiki>#</nowiki><span class="part_num">34</span>-</html<html>pSB1AK3, <nowiki>#</nowiki><span class="part_num">35</span>-</htmlpSB1AK3)
*Colony PCR(additional)(previously incubated ligation products: 3, 8, 10)
*Colony PCR(additional)(previously incubated ligation products: 3, 8, 10)
*hotstart PCR(sulAp, uvrAp, uvrBp)
*hotstart PCR(sulAp, uvrAp, uvrBp)
-
*Digest(SPcut: <nowiki>#</nowiki>3, Ecut:<nowiki>#</nowiki>3(control)) go to 37 incubation
+
<html>*Digest(SPcut: <nowiki>#</nowiki><span class="part_num">3</span></html<html>, Ecut:<nowiki>#</nowiki><span class="part_num">3</span></html(control)) go to 37 incubation
-
*Ligation retry(<nowiki>#</nowiki>3-<nowiki>#</nowiki>14-5, <nowiki>#</nowiki>3-<nowiki>#</nowiki>27, <nowiki>#</nowiki>3-<nowiki>#</nowiki>29, Negative control :<nowiki>#</nowiki>3)
+
<html>*Ligation retry(<nowiki>#</nowiki><span class="part_num">3</span>-</html<html><nowiki>#</nowiki><span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-</html<html><nowiki>#</nowiki><span class="part_num">27</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-</html<html><nowiki>#</nowiki><span class="part_num">29</span></html<html>, Negative control :<nowiki>#</nowiki><span class="part_num">3</span></html)
-
*Frozen stock(<nowiki>#</nowiki>14, <nowiki>#</nowiki>17)
+
<html>*Frozen stock(<nowiki>#</nowiki><span class="part_num">14</span></html<html>, <nowiki>#</nowiki><span class="part_num">17</span></html)
-
*Culture test(<nowiki>#</nowiki>14 on 0.3%Agar.(km))
+
<html>*Culture test(<nowiki>#</nowiki><span class="part_num">14</span></html on 0.3%Agar.(km))
*Ethanol precipitation: 29.9ng/ul * 1000ul
*Ethanol precipitation: 29.9ng/ul * 1000ul
-
*Miniprep(Ligation products : <nowiki>#</nowiki>2-3-17-5, <nowiki>#</nowiki>14, <nowiki>#</nowiki>17, <nowiki>#</nowiki>1, <nowiki>#</nowiki>2)
+
<html>*Miniprep(Ligation products : <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">14</span></html<html>, <nowiki>#</nowiki><span class="part_num">17</span></html<html>, <nowiki>#</nowiki><span class="part_num">1</span></html<html>, <nowiki>#</nowiki><span class="part_num">2</span></html)
*Electrophoresis(Colony PCR products: 3, 8, 10)
*Electrophoresis(Colony PCR products: 3, 8, 10)
-
*Waking from frozen stock(<nowiki>#</nowiki>3, CheZ-, WT)
+
<html>*Waking from frozen stock(<nowiki>#</nowiki><span class="part_num">3</span></html, CheZ-, WT)
<html></div></html>
<html></div></html>
Line 584: Line 584:
*Making Competent Cell, SOB medium
*Making Competent Cell, SOB medium
*Ethanol precipitation(WT: 40ng/ul)
*Ethanol precipitation(WT: 40ng/ul)
-
*Culture from master-plate(<nowiki>#</nowiki>6-5, <nowiki>#</nowiki>20-28, <nowiki>#</nowiki>3-27, <nowiki>#</nowiki>33, <nowiki>#</nowiki>24-3-11-5 <nowiki>#</nowiki>24-3-17-5) -> Miniprep
+
<html>*Culture from master-plate(<nowiki>#</nowiki><span class="part_num">6</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">28</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span></html<html>, <nowiki>#</nowiki><span class="part_num">33</span></html<html>, <nowiki>#</nowiki><span class="part_num">24</span>-<span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html<html> <nowiki>#</nowiki><span class="part_num">24</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html) -> Miniprep
*Assay(IPTG induced cell lysis device
*Assay(IPTG induced cell lysis device
-
*Gel extraction(SPcut:<nowiki>#</nowiki>3)
+
<html>*Gel extraction(SPcut:<nowiki>#</nowiki><span class="part_num">3</span></html)
-
*Culture from Frozen stock(<nowiki>#</nowiki>1, <nowiki>#</nowiki>2, <nowiki>#</nowiki>2-3-17-5)
+
<html>*Culture from Frozen stock(<nowiki>#</nowiki><span class="part_num">1</span></html<html>, <nowiki>#</nowiki><span class="part_num">2</span></html<html>, <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html)
*Electrophresis check(Loading only DNA size markers)
*Electrophresis check(Loading only DNA size markers)
-
*Miniprep(<nowiki>#</nowiki>3, <nowiki>#</nowiki>6-5, <nowiki>#</nowiki>20-28, <nowiki>#</nowiki>3-27, <nowiki>#</nowiki>33, <nowiki>#</nowiki>24-3-11-5 <nowiki>#</nowiki>24-3-17-5)
+
<html>*Miniprep(<nowiki>#</nowiki><span class="part_num">3</span></html<html>, <nowiki>#</nowiki><span class="part_num">6</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">28</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span></html<html>, <nowiki>#</nowiki><span class="part_num">33</span></html<html>, <nowiki>#</nowiki><span class="part_num">24</span>-<span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html<html> <nowiki>#</nowiki><span class="part_num">24</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html)
<html></div></html>
<html></div></html>
<html><div class="labDay"></html>
<html><div class="labDay"></html>
==='11/08/18(Thu)===
==='11/08/18(Thu)===
-
*Digest(8/17<nowiki>#</nowiki>3, <nowiki>#</nowiki>33 SPcut, <nowiki>#</nowiki>14-5 XPcut, <nowiki>#</nowiki>33 Ecut, <nowiki>#</nowiki>3-27,<nowiki>#</nowiki>3-30,<nowiki>#</nowiki>20-28 EScut, pSB1K3 EPcut)
+
<html>*Digest(8/17<nowiki>#</nowiki><span class="part_num">3</span></html<html>, <nowiki>#</nowiki><span class="part_num">33</span></html<html> SPcut, <nowiki>#</nowiki><span class="part_num">14</span>-<span class="part_num">5</span></html<html> XPcut, <nowiki>#</nowiki><span class="part_num">33</span></html<html> Ecut, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span></html<html>,<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">30</span></html<html>,<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">28</span></html EScut, pSB1K3 EPcut)
*Hotstart-PCR (Change conditions a little)
*Hotstart-PCR (Change conditions a little)
**From Genome :  uvrBp, cheZ
**From Genome :  uvrBp, cheZ
**From nested-region : uvrA
**From nested-region : uvrA
-
*Culture from 0809 master-plate ⑪ (<nowiki>#</nowiki>2-3-11-5) → Miniprep.
+
<html>*Culture from 0809 master-plate ⑪ (<nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html) → Miniprep.
*Making LB plate & tube with various agarose conc. (plate: 0.5, 0.7, 0.9%×2 each, tube: 0.5,1.0,1.5,2.0,3.0%×2 each)(selection: Kanamycin)
*Making LB plate & tube with various agarose conc. (plate: 0.5, 0.7, 0.9%×2 each, tube: 0.5,1.0,1.5,2.0,3.0%×2 each)(selection: Kanamycin)
-
*Gel extraction(8/17<nowiki>#</nowiki>3_SP,<nowiki>#</nowiki>33_SP, <nowiki>#</nowiki>14-5_XP, <nowiki>#</nowiki>33_E, <nowiki>#</nowiki>3-27_ES, pSB1K3 _EP)
+
<html>*Gel extraction(8/17<nowiki>#</nowiki><span class="part_num">3</span></html<html>_SP,<nowiki>#</nowiki><span class="part_num">33</span></html<html>_SP, <nowiki>#</nowiki><span class="part_num">14</span>-<span class="part_num">5</span></html<html>_XP, <nowiki>#</nowiki><span class="part_num">33</span></html<html>_E, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span></html_ES, pSB1K3 _EP)
-
*Miniprep(<nowiki>#</nowiki>1, <nowiki>#</nowiki>2, <nowiki>#</nowiki>2-3-11-5, <nowiki>#</nowiki>2-3-17-5)
+
<html>*Miniprep(<nowiki>#</nowiki><span class="part_num">1</span></html<html>, <nowiki>#</nowiki><span class="part_num">2</span></html<html>, <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html)
-
*Digest(<nowiki>#</nowiki>1,<nowiki>#</nowiki>2 SPcut, <nowiki>#</nowiki>2-3-17-5 XPcut, <nowiki>#</nowiki>2-3-11-5 SPcut(check), EPcut(selection), <nowiki>#</nowiki>3-30, <nowiki>#</nowiki>20-28 EScut, 0817 Gel extracted PCR product (uvrBp) EScut, 0818PCR products (uvrAp, uvrBp, cheZ) ES&XPcut)
+
<html>*Digest(<nowiki>#</nowiki><span class="part_num">1</span></html<html>,<nowiki>#</nowiki><span class="part_num">2</span></html<html> SPcut, <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html> XPcut, <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html<html> SPcut(check), EPcut(selection), <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">30</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">28</span></html EScut, 0817 Gel extracted PCR product (uvrBp) EScut, 0818PCR products (uvrAp, uvrBp, cheZ) ES&XPcut)
-
*Ligation (8/17<nowiki>#</nowiki>3-<nowiki>#</nowiki>14-5, 8/17<nowiki>#</nowiki>3-8/15<nowiki>#</nowiki>29, <nowiki>#</nowiki>33-<nowiki>#</nowiki>3-11-5, 8/15<nowiki>#</nowiki>34-pSB1AK3, <nowiki>#</nowiki>3-27-<nowiki>#</nowiki>5, <nowiki>#</nowiki>20-28-pSB1AK3, <nowiki>#</nowiki>28-pSB1AK3)
+
<html>*Ligation (8/17<nowiki>#</nowiki><span class="part_num">3</span>-</html<html><nowiki>#</nowiki><span class="part_num">14</span>-<span class="part_num">5</span></html<html>, 8/17<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">8</span></html<html>/15<nowiki>#</nowiki><span class="part_num">29</span></html<html>, <nowiki>#</nowiki><span class="part_num">33</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html<html>, 8/15<nowiki>#</nowiki><span class="part_num">34</span>-</html<html>pSB1AK3, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-</html<html><nowiki>#</nowiki><span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">28</span>-</html<html>pSB1AK3, <nowiki>#</nowiki><span class="part_num">28</span>-</htmlpSB1AK3)
*Culture for frozen stock in eppendolf tube
*Culture for frozen stock in eppendolf tube
<html></div></html>
<html></div></html>
Line 609: Line 609:
<html><div class="labDay"></html>
<html><div class="labDay"></html>
==='11/08/19(Fri)===
==='11/08/19(Fri)===
-
*ColonyPCR(from ligation products)(<nowiki>#</nowiki>3-14-5, <nowiki>#</nowiki>3-29, <nowiki>#</nowiki>33-3-11-5, <nowiki>#</nowiki>34-pSB1AK3, <nowiki>#</nowiki>3-27-5)
+
<html>*ColonyPCR(from ligation products)(<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">29</span></html<html>, <nowiki>#</nowiki><span class="part_num">33</span>-<span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">34</span>-</html<html>pSB1AK3, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-<span class="part_num">5</span></html)
-
*Gel extraction(08/18's digest products:<nowiki>#</nowiki>1_SP, <nowiki>#</nowiki>2_SP, <nowiki>#</nowiki>2-3-11-5_SP, <nowiki>#</nowiki>2-3-17-5_XP, cheZ_XP, <nowiki>#</nowiki>2-3-11-5_EP, 8/18uvrBp_ES, 8/17uvrBp_ES, uvrAp_ES)
+
<html>*Gel extraction(08/18's digest products:<nowiki>#</nowiki><span class="part_num">1</span></html<html>_SP, <nowiki>#</nowiki><span class="part_num">2</span></html<html>_SP, <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html<html>_SP, <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>_XP, cheZ_XP, <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html_EP, 8/18uvrBp_ES, 8/17uvrBp_ES, uvrAp_ES)
-
*Colony PCR retry(<nowiki>#</nowiki>3-29, <nowiki>#</nowiki>34-pSB1AK3)
+
<html>*Colony PCR retry(<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">29</span></html<html>, <nowiki>#</nowiki><span class="part_num">34</span>-</htmlpSB1AK3)
*Frozen Stock
*Frozen Stock
*Check the list of frozen stock
*Check the list of frozen stock
*Assay of recAp from biobrick parts using RFP construct & transilluminator
*Assay of recAp from biobrick parts using RFP construct & transilluminator
-
*Electrophoresis(<nowiki>#</nowiki>3, <nowiki>#</nowiki>3-27, <nowiki>#</nowiki>3-30, <nowiki>#</nowiki>6-5, <nowiki>#</nowiki>7, <nowiki>#</nowiki>20-28, <nowiki>#</nowiki>24-3-11-5, <nowiki>#</nowiki>24-3-17-5, <nowiki>#</nowiki>33)
+
<html>*Electrophoresis(<nowiki>#</nowiki><span class="part_num">3</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">30</span></html<html>, <nowiki>#</nowiki><span class="part_num">6</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">7</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">28</span></html<html>, <nowiki>#</nowiki><span class="part_num">24</span>-<span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">24</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">33</span></html)
<html></div></html>
<html></div></html>
Line 622: Line 622:
*Making SOB medium
*Making SOB medium
*Culture for Miniprep
*Culture for Miniprep
-
**From frozen stock(<nowiki>#</nowiki>1, <nowiki>#</nowiki>2, <nowiki>#</nowiki>7, <nowiki>#</nowiki>2-3-17-5(2), <nowiki>#</nowiki>3-30)
+
<html>**From frozen stock(<nowiki>#</nowiki><span class="part_num">1</span></html<html>, <nowiki>#</nowiki><span class="part_num">2</span></html<html>, <nowiki>#</nowiki><span class="part_num">7</span></html<html>, <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>(2), <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">30</span></html)
-
**From master plate(<nowiki>#</nowiki>3-14-5, <nowiki>#</nowiki>33-3-11-5, <nowiki>#</nowiki>34-pSB1AK3, <nowiki>#</nowiki>3-27-5)
+
<html>**From master plate(<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">33</span>-<span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">34</span>-</html<html>pSB1AK3, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-<span class="part_num">5</span></html)
**From master plate retry( at 13:50 OD600=0)
**From master plate retry( at 13:50 OD600=0)
**From ligation products (for mistake above)
**From ligation products (for mistake above)
*Miniprep, Nanodrop and Electrophoresis
*Miniprep, Nanodrop and Electrophoresis
-
**From frozen stock(<nowiki>#</nowiki>1, <nowiki>#</nowiki>2, <nowiki>#</nowiki>2-3-17-5(2), <nowiki>#</nowiki>3-30) <nowiki>#</nowiki>7 was a little bit weak
+
<html>**From frozen stock(<nowiki>#</nowiki><span class="part_num">1</span></html<html>, <nowiki>#</nowiki><span class="part_num">2</span></html<html>, <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>(2), <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">30</span></html<html>) <nowiki>#</nowiki><span class="part_num">7</span></html was a little bit weak
-
**From ligation products(<nowiki>#</nowiki>7, <nowiki>#</nowiki>3-14-5, <nowiki>#</nowiki>3-27-5, <nowiki>#</nowiki>34, <nowiki>#</nowiki>33-3-11-5)
+
<html>**From ligation products(<nowiki>#</nowiki><span class="part_num">7</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">34</span></html<html>, <nowiki>#</nowiki><span class="part_num">33</span>-<span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html)
*Digest
*Digest
-
**From Frozen Stock (<nowiki>#</nowiki>7_EX, <nowiki>#</nowiki>30_XP, <nowiki>#</nowiki>2-3-17-5_XP, <nowiki>#</nowiki>3-30_ES)
+
<html>**From Frozen Stock (<nowiki>#</nowiki><span class="part_num">7</span></html<html>_EX, <nowiki>#</nowiki><span class="part_num">30</span></html<html>_XP, <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>_XP, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">30</span></html_ES)
-
**From Master plate(<nowiki>#</nowiki>3-14-5_XP, <nowiki>#</nowiki>34-pSB1AK3_SP, <nowiki>#</nowiki>3-27-5_XP)
+
<html>**From Master plate(<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>_XP, <nowiki>#</nowiki><span class="part_num">34</span>-</html<html>pSB1AK3_SP, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-<span class="part_num">5</span></html_XP)
-
*Sulvage <nowiki>#</nowiki>33 using protocol of transformation  
+
<html>*Sulvage <nowiki>#</nowiki><span class="part_num">33</span></html using protocol of transformation  
*Culture for Frozen stock
*Culture for Frozen stock
-
**From Master plate(<nowiki>#</nowiki>24-3-17-5, <nowiki>#</nowiki>14-5), 700ul, in eppendolf tube
+
<html>**From Master plate(<nowiki>#</nowiki><span class="part_num">24</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">14</span>-<span class="part_num">5</span></html), 700ul, in eppendolf tube
<html></div></html>
<html></div></html>
Line 640: Line 640:
==='11/08/23(Tue)===
==='11/08/23(Tue)===
*Gel extraction
*Gel extraction
-
**from O.N. digest products(<nowiki>#</nowiki>7_EX, <nowiki>#</nowiki>30_XP, <nowiki>#</nowiki>2-3-17-5_XP, <nowiki>#</nowiki>3-30_ES, <nowiki>#</nowiki>3-14-5_XP, <nowiki>#</nowiki>34-pSB1AK3_SP, <nowiki>#</nowiki>3-27-5_XP)
+
<html>**from O.N. digest products(<nowiki>#</nowiki><span class="part_num">7</span></html<html>_EX, <nowiki>#</nowiki><span class="part_num">30</span></html<html>_XP, <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>_XP, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">30</span></html<html>_ES, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>_XP, <nowiki>#</nowiki><span class="part_num">34</span>-</html<html>pSB1AK3_SP, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-<span class="part_num">5</span></html_XP)
*Frozen stock
*Frozen stock
-
**From O.N. culture in eppendolf tube 700ul(<nowiki>#</nowiki>24-3-17-5, <nowiki>#</nowiki>14-5)
+
<html>**From O.N. culture in eppendolf tube 700ul(<nowiki>#</nowiki><span class="part_num">24</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">14</span>-<span class="part_num">5</span></html)
-
**From O.N. culture(for Miniprep)(<nowiki>#</nowiki>34, <nowiki>#</nowiki>3-27-5, <nowiki>#</nowiki>33-3-11-5)
+
<html>**From O.N. culture(for Miniprep)(<nowiki>#</nowiki><span class="part_num">34</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">33</span>-<span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html)
*Miniprep
*Miniprep
-
**retry from master plate <nowiki>#</nowiki>3-14-5(278.1 ng/ul), <nowiki>#</nowiki>33-3-11-5(188.9ng/ul), <nowiki>#</nowiki>34-pSB1AK3(89.6ng/ul), <nowiki>#</nowiki>3-27-5(327.0 ng/ul) O.N. culture
+
<html>**retry from master plate <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>(278.1 ng/ul), <nowiki>#</nowiki><span class="part_num">33</span>-<span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html<html>(188.9ng/ul), <nowiki>#</nowiki><span class="part_num">34</span>-</html<html>pSB1AK3(89.6ng/ul), <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-<span class="part_num">5</span></html(327.0 ng/ul) O.N. culture
-
*Digest (<nowiki>#</nowiki>14-5 XPcut, <nowiki>#</nowiki>3-27-5 Xcut, Pcut (check), <nowiki>#</nowiki>3-27-5 EScut (sulvage) )
+
<html>*Digest (<nowiki>#</nowiki><span class="part_num">14</span>-<span class="part_num">5</span></html<html> XPcut, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-<span class="part_num">5</span></html<html> Xcut, Pcut (check), <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-<span class="part_num">5</span></html EScut (sulvage) )
-
*Ligation (<nowiki>#</nowiki>14-<nowiki>#</nowiki>5, <nowiki>#</nowiki>3-30-<nowiki>#</nowiki>5, <nowiki>#</nowiki>3-<nowiki>#</nowiki>30, <nowiki>#</nowiki>34-<nowiki>#</nowiki>3-11-5 <nowiki>#</nowiki>20-<nowiki>#</nowiki>28)
+
<html>*Ligation (<nowiki>#</nowiki><span class="part_num">14</span>-</html<html><nowiki>#</nowiki><span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">30</span>-</html<html><nowiki>#</nowiki><span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-</html<html><nowiki>#</nowiki><span class="part_num">30</span></html<html>, <nowiki>#</nowiki><span class="part_num">34</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html<html> <nowiki>#</nowiki><span class="part_num">20</span>-</html<html><nowiki>#</nowiki><span class="part_num">28</span></html)
-
*<nowiki>#</nowiki>33 sulvage (isolation culture)
+
<html>*<nowiki>#</nowiki><span class="part_num">33</span></html sulvage (isolation culture)
*Making culture(LB amp, LB)
*Making culture(LB amp, LB)
<html></div></html>
<html></div></html>
Line 654: Line 654:
<html><div class="labDay"></html>
<html><div class="labDay"></html>
==='11/08/24(Wed)===
==='11/08/24(Wed)===
-
*Gel extraction & Electrophoresis(<nowiki>#</nowiki>3-27-5_ES, <nowiki>#</nowiki>14-5_XP, <nowiki>#</nowiki>3-27-5_X, *PCR for amplification (or cloning) -> PCR clean-up system -> digest
+
<html>*Gel extraction & Electrophoresis(<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-<span class="part_num">5</span></html<html>_ES, <nowiki>#</nowiki><span class="part_num">14</span>-<span class="part_num">5</span></html<html>_XP, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-<span class="part_num">5</span></html_X, *PCR for amplification (or cloning) -> PCR clean-up system -> digest
-
**<nowiki>#</nowiki>27 (82.1 ng/ul, total = 30 ul) -> XP cut
+
<html>**<nowiki>#</nowiki><span class="part_num">27</span></html (82.1 ng/ul, total = 30 ul) -> XP cut
-
**<nowiki>#</nowiki>28 (104.4 ng/ul, total = 30 ul) -> XP cut
+
<html>**<nowiki>#</nowiki><span class="part_num">28</span></html (104.4 ng/ul, total = 30 ul) -> XP cut
*Making plate and amp stock ->4℃
*Making plate and amp stock ->4℃
**amp 32
**amp 32
**km 11 (km conc. = 3/4 * that it was)
**km 11 (km conc. = 3/4 * that it was)
*Miniprep and Nanodrop
*Miniprep and Nanodrop
-
**<nowiki>#</nowiki>33 32.1 ng/ul <- there is probability that culture volume was not enough ->transfromation
+
<html>**<nowiki>#</nowiki><span class="part_num">33</span></html 32.1 ng/ul <- there is probability that culture volume was not enough ->transfromation
*Luciferase assay reagents prep
*Luciferase assay reagents prep
**D-Luciferin Solution : 1ml*10 + 100ul*10 at -80℃
**D-Luciferin Solution : 1ml*10 + 100ul*10 at -80℃
**Coelenterazine Solution : 100ul * 10 at -20℃
**Coelenterazine Solution : 100ul * 10 at -20℃
**Lysis buffer : 500ul * 10 at -20℃
**Lysis buffer : 500ul * 10 at -20℃
-
*Ligation(<nowiki>#</nowiki>3-30-<nowiki>#</nowiki>5, <nowiki>#</nowiki>3-11-5-<nowiki>#</nowiki>34, <nowiki>#</nowiki>30-<nowiki>#</nowiki>3, <nowiki>#</nowiki>28-<nowiki>#</nowiki>20, <nowiki>#</nowiki>35-pSB1AK3, <nowiki>#</nowiki>2-3-11-5-pSB1K3, <nowiki>#</nowiki>14-5-<nowiki>#</nowiki>3 and Negative control)
+
<html>*Ligation(<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">30</span>-</html<html><nowiki>#</nowiki><span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span>-</html<html><nowiki>#</nowiki><span class="part_num">34</span></html<html>, <nowiki>#</nowiki><span class="part_num">30</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span></html<html>, <nowiki>#</nowiki><span class="part_num">28</span>-</html<html><nowiki>#</nowiki><span class="part_num">20</span></html<html>, <nowiki>#</nowiki><span class="part_num">35</span>-</html<html>pSB1AK3, <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span>-</html<html>pSB1K3, <nowiki>#</nowiki><span class="part_num">14</span>-<span class="part_num">5</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span></html and Negative control)
<html></div></html>
<html></div></html>
<html><div class="labDay"></html>
<html><div class="labDay"></html>
==='11/08/25(Thu)===
==='11/08/25(Thu)===
-
*Renilla luciferase assay (with <nowiki>#</nowiki>2-3-17-5 culture)
+
<html>*Renilla luciferase assay (with <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html culture)
-
*Gel extraction (<nowiki>#</nowiki>27, <nowiki>#</nowiki>28 XPcut)
+
<html>*Gel extraction (<nowiki>#</nowiki><span class="part_num">27</span></html<html>, <nowiki>#</nowiki><span class="part_num">28</span></html XPcut)
-
*Ligation (0824 retry & <nowiki>#</nowiki>20-<nowiki>#</nowiki>28, <nowiki>#</nowiki>3-<nowiki>#</nowiki>27)
+
<html>*Ligation (0824 retry & <nowiki>#</nowiki><span class="part_num">20</span>-</html<html><nowiki>#</nowiki><span class="part_num">28</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-</html<html><nowiki>#</nowiki><span class="part_num">27</span></html)
-
*Transformation (Ligation products into WT competent cells & <nowiki>#</nowiki>14-5 miniprep product into WT cell (line-drawing spread), <nowiki>#</nowiki>33 miniprep product into ΔcheZ cell (line-drawing spread))  
+
<html>*Transformation (Ligation products into WT competent cells & <nowiki>#</nowiki><span class="part_num">14</span>-<span class="part_num">5</span></html<html> miniprep product into WT cell (line-drawing spread), <nowiki>#</nowiki><span class="part_num">33</span></html miniprep product into ΔcheZ cell (line-drawing spread))  
-
*Digest (<nowiki>#</nowiki>14 XPcut)
+
<html>*Digest (<nowiki>#</nowiki><span class="part_num">14</span></html XPcut)
-
*Passage(<nowiki>#</nowiki>2-3-17-5, WT, ΔcheZ, WT in eppen, ΔcheZ in eppen)
+
<html>*Passage(<nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html, WT, ΔcheZ, WT in eppen, ΔcheZ in eppen)
<html></div></html>
<html></div></html>
<html><div class="labDay"></html>
<html><div class="labDay"></html>
==='11/08/26(Fri)===
==='11/08/26(Fri)===
-
*Renilla luciferase assay (with <nowiki>#</nowiki>2-3-17-5 culture)
+
<html>*Renilla luciferase assay (with <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html culture)
-
*Colony PCR (<nowiki>#</nowiki>33 Miniprep transformations)
+
<html>*Colony PCR (<nowiki>#</nowiki><span class="part_num">33</span></html Miniprep transformations)
-
*Gel extraction (<nowiki>#</nowiki>14_XP)
+
<html>*Gel extraction (<nowiki>#</nowiki><span class="part_num">14</span></html_XP)
*Ligation (retry) (using today's competent cells, 0802 ΔcheZ cells)
*Ligation (retry) (using today's competent cells, 0802 ΔcheZ cells)
*Cloning (cheZ)
*Cloning (cheZ)
-
*Digest (<nowiki>#</nowiki>5 EXcut, cheZ PCR products XPcut)
+
<html>*Digest (<nowiki>#</nowiki><span class="part_num">5</span></html EXcut, cheZ PCR products XPcut)
-
*Passage in a shaker(<nowiki>#</nowiki>2-3-17-5, WT, ΔcheZ)
+
<html>*Passage in a shaker(<nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html, WT, ΔcheZ)
*Making competent cell, LB broth
*Making competent cell, LB broth
*Contamination check (0817 comp., 0802 comp., 0802 ⊿cheZ comp. spread on LB (amp) plates)
*Contamination check (0817 comp., 0802 comp., 0802 ⊿cheZ comp. spread on LB (amp) plates)
Line 703: Line 703:
*Making ΔcheZ comp., LB amp plates, TB
*Making ΔcheZ comp., LB amp plates, TB
*Colony PCR & master plate preparation -> Failure!!
*Colony PCR & master plate preparation -> Failure!!
-
*Gel extraction (<nowiki>#</nowiki>29_XP, <nowiki>#</nowiki>5_EX)
+
<html>*Gel extraction (<nowiki>#</nowiki><span class="part_num">29</span></html<html>_XP, <nowiki>#</nowiki><span class="part_num">5</span></html_EX)
-
*Miniprep and frozen stocks (<nowiki>#</nowiki>33, <nowiki>#</nowiki>14-5)
+
<html>*Miniprep and frozen stocks (<nowiki>#</nowiki><span class="part_num">33</span></html<html>, <nowiki>#</nowiki><span class="part_num">14</span>-<span class="part_num">5</span></html)
-
*Digest (<nowiki>#</nowiki>20 SPcut, <nowiki>#</nowiki>14-5 XPcut)
+
<html>*Digest (<nowiki>#</nowiki><span class="part_num">20</span></html<html> SPcut, <nowiki>#</nowiki><span class="part_num">14</span>-<span class="part_num">5</span></html XPcut)
-
*Waking from frozen stock (WT, ⊿cheZ, <nowiki>#</nowiki>20, <nowiki>#</nowiki>14-5)
+
<html>*Waking from frozen stock (WT, ⊿cheZ, <nowiki>#</nowiki><span class="part_num">20</span></html<html>, <nowiki>#</nowiki><span class="part_num">14</span>-<span class="part_num">5</span></html)
<html></div></html>
<html></div></html>
<html><div class="labDay"></html>
<html><div class="labDay"></html>
==='11/08/29(Mon)===
==='11/08/29(Mon)===
-
*PCR purification -> digest with XP(<nowiki>#</nowiki>27, <nowiki>#</nowiki>28)
+
<html>*PCR purification -> digest with XP(<nowiki>#</nowiki><span class="part_num">27</span></html<html>, <nowiki>#</nowiki><span class="part_num">28</span></html)
-
*Miniprep(<nowiki>#</nowiki>20, <nowiki>#</nowiki>14-5)
+
<html>*Miniprep(<nowiki>#</nowiki><span class="part_num">20</span></html<html>, <nowiki>#</nowiki><span class="part_num">14</span>-<span class="part_num">5</span></html)
-
*Gel extraction(<nowiki>#</nowiki>14-5, <nowiki>#</nowiki>20)
+
<html>*Gel extraction(<nowiki>#</nowiki><span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span></html)
-
*Ligation (higher I/V ratio, into cheZ comp.)(<nowiki>#</nowiki>3-<nowiki>#</nowiki>14-5(retry), <nowiki>#</nowiki>2-3-11-5 to pSB1K3 (retry), <nowiki>#</nowiki>35-pSB1AK3, (<nowiki>#</nowiki>33,<nowiki>#</nowiki>34)-<nowiki>#</nowiki>3-17-5)
+
<html>*Ligation (higher I/V ratio, into cheZ comp.)(<nowiki>#</nowiki><span class="part_num">3</span>-</html<html><nowiki>#</nowiki><span class="part_num">14</span>-<span class="part_num">5</span></html<html>(retry), <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html<html> to pSB1K3 (retry), <nowiki>#</nowiki><span class="part_num">35</span>-</html<html>pSB1AK3, (<nowiki>#</nowiki><span class="part_num">33</span></html<html>,<nowiki>#</nowiki><span class="part_num">34</span></html<html>)-<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html)
<html></div></html>
<html></div></html>
Line 720: Line 720:
==='11/08/30(Tue)===
==='11/08/30(Tue)===
*Making LB amp, Aspartic acid solution (10mM), H2O2 solution (10mM)
*Making LB amp, Aspartic acid solution (10mM), H2O2 solution (10mM)
-
*Gel extraction -> PCR was failed!(<nowiki>#</nowiki>27,<nowiki>#</nowiki>28)
+
<html>*Gel extraction -> PCR was failed!(<nowiki>#</nowiki><span class="part_num">27</span></html<html>,<nowiki>#</nowiki><span class="part_num">28</span></html)
*There was trash (from PCR) below
*There was trash (from PCR) below
-
*Colony PCR(<nowiki>#</nowiki>3-<nowiki>#</nowiki>14-5, <nowiki>#</nowiki>2-3-11-5 to pSB1K3, <nowiki>#</nowiki>35-pSB1AK3, (<nowiki>#</nowiki>33,<nowiki>#</nowiki>34)-<nowiki>#</nowiki>3-17-5)
+
<html>*Colony PCR(<nowiki>#</nowiki><span class="part_num">3</span>-</html<html><nowiki>#</nowiki><span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html<html> to pSB1K3, <nowiki>#</nowiki><span class="part_num">35</span>-</html<html>pSB1AK3, (<nowiki>#</nowiki><span class="part_num">33</span></html<html>,<nowiki>#</nowiki><span class="part_num">34</span></html<html>)-<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html)
-
*PCR -> check (5uL EP -> PCR clean-up(<nowiki>#</nowiki>27,<nowiki>#</nowiki>28)
+
<html>*PCR -> check (5uL EP -> PCR clean-up(<nowiki>#</nowiki><span class="part_num">27</span></html<html>,<nowiki>#</nowiki><span class="part_num">28</span></html)
-
*Digest(<nowiki>#</nowiki>20_SP, pSB1AK3_EP, <nowiki>#</nowiki>3_SP)
+
<html>*Digest(<nowiki>#</nowiki><span class="part_num">20</span></html<html>_SP, pSB1AK3_EP, <nowiki>#</nowiki><span class="part_num">3</span></html_SP)
-
*EP for MP check(<nowiki>#</nowiki>14-5, <nowiki>#</nowiki>20)
+
<html>*EP for MP check(<nowiki>#</nowiki><span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span></html)
-
*Ligation(<nowiki>#</nowiki>3-<nowiki>#</nowiki>29, pSB1AK3-<nowiki>#</nowiki>2-3-11-5 on Amp/Km plate, <nowiki>#</nowiki>3 (Negative control), pSB1AK3 (Negative control) on Amp/Km plate
+
<html>*Ligation(<nowiki>#</nowiki><span class="part_num">3</span>-</html<html><nowiki>#</nowiki><span class="part_num">29</span></html<html>, pSB1AK3-<nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html<html> on Amp/Km plate, <nowiki>#</nowiki><span class="part_num">3</span></html (Negative control), pSB1AK3 (Negative control) on Amp/Km plate
-
*Transformation(<nowiki>#</nowiki>2-9 into cheZ-) -> Line-drawing plating
+
<html>*Transformation(<nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">9</span></html into cheZ-) -> Line-drawing plating
-
*SOS stress (UV irradiation or H2O2)(<nowiki>#</nowiki>24-3-11-5, <nowiki>#</nowiki>33-3-11-5)
+
<html>*SOS stress (UV irradiation or H2O2)(<nowiki>#</nowiki><span class="part_num">24</span>-<span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">33</span>-<span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html)
-
*culture for Miniprep from master plate(<nowiki>#</nowiki>34-3-17-5)
+
<html>*culture for Miniprep from master plate(<nowiki>#</nowiki><span class="part_num">34</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html)
-
*Waking from frozen stock(<nowiki>#</nowiki>24-3-11-5, <nowiki>#</nowiki>33-3-11-5)
+
<html>*Waking from frozen stock(<nowiki>#</nowiki><span class="part_num">24</span>-<span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">33</span>-<span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html)
<html></div></html>
<html></div></html>
Line 738: Line 738:
*Luciferin reagent preparation
*Luciferin reagent preparation
*Flask A.C. for making competent cells
*Flask A.C. for making competent cells
-
*Miniprep (<nowiki>#</nowiki>34-3-17-5)
+
<html>*Miniprep (<nowiki>#</nowiki><span class="part_num">34</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html)
-
*Gel extraction(<nowiki>#</nowiki>20_SP, pSB1AK3_EP, <nowiki>#</nowiki>3_SP)
+
<html>*Gel extraction(<nowiki>#</nowiki><span class="part_num">20</span></html<html>_SP, pSB1AK3_EP, <nowiki>#</nowiki><span class="part_num">3</span></html_SP)
-
*PCR -> clean-up -> XPcut(<nowiki>#</nowiki>27, <nowiki>#</nowiki>28, <nowiki>#</nowiki>14-5, <nowiki>#</nowiki>3-30)
+
<html>*PCR -> clean-up -> XPcut(<nowiki>#</nowiki><span class="part_num">27</span></html<html>, <nowiki>#</nowiki><span class="part_num">28</span></html<html>, <nowiki>#</nowiki><span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">30</span></html)
-
*Waking from frozen stock(<nowiki>#</nowiki>2-9 (WT), <nowiki>#</nowiki>24-3-17-5)
+
<html>*Waking from frozen stock(<nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">9</span></html<html> (WT), <nowiki>#</nowiki><span class="part_num">24</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html)
-
*Plating from liquid culture(<nowiki>#</nowiki>2-3-17-5)
+
<html>*Plating from liquid culture(<nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html)
-
*Ligation(<nowiki>#</nowiki>20-<nowiki>#</nowiki>3-17-5, <nowiki>#</nowiki>2-3-11-5-pSB1AK3, <nowiki>#</nowiki>3-<nowiki>#</nowiki>14, <nowiki>#</nowiki>20-<nowiki>#</nowiki>28, <nowiki>#</nowiki>3-<nowiki>#</nowiki>27, <nowiki>#</nowiki>3-<nowiki>#</nowiki>29, <nowiki>#</nowiki>35-pSB1AK3, <nowiki>#</nowiki>3-<nowiki>#</nowiki>14-5, <nowiki>#</nowiki>3-30-<nowiki>#</nowiki>5, <nowiki>#</nowiki>33-<nowiki>#</nowiki>3-17-5 & Negative control)
+
<html>*Ligation(<nowiki>#</nowiki><span class="part_num">20</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span>-</html<html>pSB1AK3, <nowiki>#</nowiki><span class="part_num">3</span>-</html<html><nowiki>#</nowiki><span class="part_num">14</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span>-</html<html><nowiki>#</nowiki><span class="part_num">28</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-</html<html><nowiki>#</nowiki><span class="part_num">27</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-</html<html><nowiki>#</nowiki><span class="part_num">29</span></html<html>, <nowiki>#</nowiki><span class="part_num">35</span>-</html<html>pSB1AK3, <nowiki>#</nowiki><span class="part_num">3</span>-</html<html><nowiki>#</nowiki><span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">30</span>-</html<html><nowiki>#</nowiki><span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">33</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html & Negative control)
*Transformation
*Transformation
-
**Plasmid isolation(<nowiki>#</nowiki>34-3-17-5(MP;1:9gradient))
+
<html>**Plasmid isolation(<nowiki>#</nowiki><span class="part_num">34</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html(MP;1:9gradient))
-
**Part cloning(<nowiki>#</nowiki>36, <nowiki>#</nowiki>37)
+
<html>**Part cloning(<nowiki>#</nowiki><span class="part_num">36</span></html<html>, <nowiki>#</nowiki><span class="part_num">37</span></html)
**Contamination check(pSB1AK3(EPcut), pSB1K3(EPcut))
**Contamination check(pSB1AK3(EPcut), pSB1K3(EPcut))
-
**Titer check(<nowiki>#</nowiki>3-17-5(Takara comp.,1:9gradient), <nowiki>#</nowiki>2-3-11-5(ΔcheZ comp.0802, 1:9gradient), <nowiki>#</nowiki>2-3-11-5(ΔcheZ comp.0830, 1:9gradient))
+
<html>**Titer check(<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>(Takara comp.,1:9gradient), <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html<html>(ΔcheZ comp.0802, 1:9gradient), <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html(ΔcheZ comp.0830, 1:9gradient))
**Ligation products
**Ligation products
<html></div></html>
<html></div></html>
Line 758: Line 758:
==='11/09/01(Thu)===
==='11/09/01(Thu)===
*Colony PCR
*Colony PCR
-
**<nowiki>#</nowiki>34-3-17-5(MP), <nowiki>#</nowiki>3-14, <nowiki>#</nowiki>3-29, <nowiki>#</nowiki>35-pSB1AK3, <nowiki>#</nowiki>3-14-5, <nowiki>#</nowiki>37(from Part cloning)
+
<html>**<nowiki>#</nowiki><span class="part_num">34</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>(MP), <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">29</span></html<html>, <nowiki>#</nowiki><span class="part_num">35</span>-</html<html>pSB1AK3, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">37</span></html(from Part cloning)
*Gel extraction
*Gel extraction
-
**<nowiki>#</nowiki>27_XP ,<nowiki>#</nowiki>28_XP(0830); <nowiki>#</nowiki>27_XP, <nowiki>#</nowiki>28_XP, <nowiki>#</nowiki>3-30_XP -> failed!, <nowiki>#</nowiki>14-5_XP(0831)
+
<html>**<nowiki>#</nowiki><span class="part_num">27</span></html<html>_XP ,<nowiki>#</nowiki><span class="part_num">28</span></html<html>_XP(0830); <nowiki>#</nowiki><span class="part_num">27</span></html<html>_XP, <nowiki>#</nowiki><span class="part_num">28</span></html<html>_XP, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">30</span></html<html>_XP -> failed!, <nowiki>#</nowiki><span class="part_num">14</span>-<span class="part_num">5</span></html_XP(0831)
*Making medium(SOB, LB amp plate), competent cells (WT & ΔcheZ)
*Making medium(SOB, LB amp plate), competent cells (WT & ΔcheZ)
-
*Miniprep(<nowiki>#</nowiki>3, <nowiki>#</nowiki>20)
+
<html>*Miniprep(<nowiki>#</nowiki><span class="part_num">3</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span></html)
*PCR and Column purification
*PCR and Column purification
-
**<nowiki>#</nowiki>3-14, <nowiki>#</nowiki>3-29, <nowiki>#</nowiki>3-14-5 (Recovery from colony PCR tubes!)
+
<html>**<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">29</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html (Recovery from colony PCR tubes!)
*Digest
*Digest
-
**<nowiki>#</nowiki>3 -> Failed (Mixed with DMSO!), <nowiki>#</nowiki>20
+
<html>**<nowiki>#</nowiki><span class="part_num">3</span></html<html> -> Failed (Mixed with DMSO!), <nowiki>#</nowiki><span class="part_num">20</span></html
-
**<nowiki>#</nowiki>3-14, <nowiki>#</nowiki>3-29, <nowiki>#</nowiki>3-14-5
+
<html>**<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">29</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html
*Ligation
*Ligation
-
**<nowiki>#</nowiki>3-27, <nowiki>#</nowiki>20-<nowiki>#</nowiki>3-17-5
+
<html>**<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html
*Transformation
*Transformation
-
**<nowiki>#</nowiki>36 into Nippon Gene comp.
+
<html>**<nowiki>#</nowiki><span class="part_num">36</span></html into Nippon Gene comp.
**Ligation products into Takara comp. (including N.C.)
**Ligation products into Takara comp. (including N.C.)
-
**Titer check(MP product <nowiki>#</nowiki>3 into 0901 WT comp., MP product <nowiki>#</nowiki>20 into 0901 ΔcheZ comp.)
+
<html>**Titer check(MP product <nowiki>#</nowiki><span class="part_num">3</span></html<html> into 0901 WT comp., MP product <nowiki>#</nowiki><span class="part_num">20</span></html into 0901 ΔcheZ comp.)
-
*Mobility assay(<nowiki>#</nowiki>14-5 (km resistance) WT/ΔcheZ cells)
+
<html>*Mobility assay(<nowiki>#</nowiki><span class="part_num">14</span>-<span class="part_num">5</span></html (km resistance) WT/ΔcheZ cells)
<html></div></html>
<html></div></html>
Line 781: Line 781:
*Making medium and reagent(LB 120ml(0.125, 0.25, 0.5% Agar, M9 stock(20×), M9 200ml, Vitamins Solution (100×))
*Making medium and reagent(LB 120ml(0.125, 0.25, 0.5% Agar, M9 stock(20×), M9 200ml, Vitamins Solution (100×))
*Gel extraction -> Digest products were OK but extraction was failed.
*Gel extraction -> Digest products were OK but extraction was failed.
-
**<nowiki>#</nowiki>20_SP, <nowiki>#</nowiki>3-14_XP, <nowiki>#</nowiki>3-14-5_XP, <nowiki>#</nowiki>3-29_XP
+
<html>**<nowiki>#</nowiki><span class="part_num">20</span></html<html>_SP, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span></html<html>_XP, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>_XP, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">29</span></html_XP
-
*Colony PCR & Master plate(<nowiki>#</nowiki>20-3-17-5, <nowiki>#</nowiki>3-27)
+
<html>*Colony PCR & Master plate(<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span></html)
-
*Miniprep(<nowiki>#</nowiki>3, <nowiki>#</nowiki>20, <nowiki>#</nowiki>37, <nowiki>#</nowiki>3-14, <nowiki>#</nowiki>3-29, <nowiki>#</nowiki>3-14-5, <nowiki>#</nowiki>20-3-17-5, <nowiki>#</nowiki>3-27, ΔcheZ)
+
<html>*Miniprep(<nowiki>#</nowiki><span class="part_num">3</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span></html<html>, <nowiki>#</nowiki><span class="part_num">37</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">29</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span></html, ΔcheZ)
*Hot-start PCR & Column purification -> PCR products were OK but all purified products were lost.
*Hot-start PCR & Column purification -> PCR products were OK but all purified products were lost.
-
**<nowiki>#</nowiki>20-3-17-5, <nowiki>#</nowiki>3-27 (Recovery from colony PCR tubes)
+
<html>**<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span></html (Recovery from colony PCR tubes)
-
**<nowiki>#</nowiki>3-14, <nowiki>#</nowiki>3-14-5, <nowiki>#</nowiki>3-29 (from miniprep products)
+
<html>**<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">29</span></html (from miniprep products)
*PCR & Column purification
*PCR & Column purification
-
**<nowiki>#</nowiki>20-3-17-5, <nowiki>#</nowiki>3-27, <nowiki>#</nowiki>3-14-5, <nowiki>#</nowiki>3-29 (from miniprep products)
+
<html>**<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">29</span></html (from miniprep products)
*Digest
*Digest
-
**<nowiki>#</nowiki>3_SP, <nowiki>#</nowiki>20_SP, <nowiki>#</nowiki>37_ES, <nowiki>#</nowiki>3-14_ES, <nowiki>#</nowiki>3-29_ES, <nowiki>#</nowiki>3-14-5_XP, ΔcheZ_E/P (from MP products)
+
<html>**<nowiki>#</nowiki><span class="part_num">3</span></html<html>_SP, <nowiki>#</nowiki><span class="part_num">20</span></html<html>_SP, <nowiki>#</nowiki><span class="part_num">37</span></html<html>_ES, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span></html<html>_ES, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">29</span></html<html>_ES, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html_XP, ΔcheZ_E/P (from MP products)
-
**<nowiki>#</nowiki>20-3-17-5_XP, <nowiki>#</nowiki>3-27_ES, <nowiki>#</nowiki>3-14-5_XP, <nowiki>#</nowiki>3-29_ES (from PCR products)
+
<html>**<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>_XP, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span></html<html>_ES, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>_XP, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">29</span></html_ES (from PCR products)
<html></div></html>
<html></div></html>
Line 798: Line 798:
*Gel extraction
*Gel extraction
*Ligation & Transformation
*Ligation & Transformation
-
**<nowiki>#</nowiki>20-<nowiki>#</nowiki>3-14-5, <nowiki>#</nowiki>2-<nowiki>#</nowiki>3-14-5, <nowiki>#</nowiki>3-27-<nowiki>#</nowiki>5 into Nippon Gene comp. (+ High Competent Broth 240ul)
+
<html>**<nowiki>#</nowiki><span class="part_num">20</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">2</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-</html<html><nowiki>#</nowiki><span class="part_num">5</span></html into Nippon Gene comp. (+ High Competent Broth 240ul)
-
**<nowiki>#</nowiki>3-27-<nowiki>#</nowiki>5, <nowiki>#</nowiki>37-<nowiki>#</nowiki>5 into 0902 WT comp.(+ Takara SOC broth 500ul)
+
<html>**<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-</html<html><nowiki>#</nowiki><span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">37</span>-</html<html><nowiki>#</nowiki><span class="part_num">5</span></html into 0902 WT comp.(+ Takara SOC broth 500ul)
*Assays
*Assays
**Mobility assay (.5%, .25%, .125%)
**Mobility assay (.5%, .25%, .125%)
**Asp assay
**Asp assay
-
*Part Cloning (<nowiki>#</nowiki>36)
+
<html>*Part Cloning (<nowiki>#</nowiki><span class="part_num">36</span></html)
<html></div></html>
<html></div></html>
Line 809: Line 809:
==='11/09/04(Sun)===
==='11/09/04(Sun)===
*Hot-start PCR Pre-Mix (4×) preparation (Buffer + dNTPs + THUNDER Taq)
*Hot-start PCR Pre-Mix (4×) preparation (Buffer + dNTPs + THUNDER Taq)
-
*Colony PCR(<nowiki>#</nowiki>20-3-14-5, <nowiki>#</nowiki>3-27-5, <nowiki>#</nowiki>3-29-5, <nowiki>#</nowiki>37-5)
+
<html>*Colony PCR(<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">37</span>-<span class="part_num">5</span></html)
*Colony Diffusion Assays
*Colony Diffusion Assays
*GFP Live-Imaging Assays
*GFP Live-Imaging Assays
*Ligation & Transformation (retry)  
*Ligation & Transformation (retry)  
-
**<nowiki>#</nowiki>2-<nowiki>#</nowiki>3-14-5, <nowiki>#</nowiki>3-27-<nowiki>#</nowiki>5, <nowiki>#</nowiki>3-29-<nowiki>#</nowiki>5, <nowiki>#</nowiki>37-<nowiki>#</nowiki>5, <nowiki>#</nowiki>20-<nowiki>#</nowiki>28 into 0901 WT comp.
+
<html>**<nowiki>#</nowiki><span class="part_num">2</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-</html<html><nowiki>#</nowiki><span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">29</span>-</html<html><nowiki>#</nowiki><span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">37</span>-</html<html><nowiki>#</nowiki><span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span>-</html<html><nowiki>#</nowiki><span class="part_num">28</span></html into 0901 WT comp.
-
**<nowiki>#</nowiki>36 into Takara comp.
+
<html>**<nowiki>#</nowiki><span class="part_num">36</span></html into Takara comp.
-
**<nowiki>#</nowiki>2, <nowiki>#</nowiki>5 as Negative Controls into 0901 WT comp.
+
<html>**<nowiki>#</nowiki><span class="part_num">2</span></html<html>, <nowiki>#</nowiki><span class="part_num">5</span></html as Negative Controls into 0901 WT comp.
-
*Culture for Miniprep(<nowiki>#</nowiki>20-3-14-5, <nowiki>#</nowiki>20)
+
<html>*Culture for Miniprep(<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span></html)
-
*Digest(<nowiki>#</nowiki>20)
+
<html>*Digest(<nowiki>#</nowiki><span class="part_num">20</span></html)
<html></div></html>
<html></div></html>
<html><div class="labDay"></html>
<html><div class="labDay"></html>
==='11/09/05(Mon)===
==='11/09/05(Mon)===
-
*Colony Diffusion Assays (<nowiki>#</nowiki>2-9) WT,cheZ-
+
<html>*Colony Diffusion Assays (<nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">9</span></html) WT,cheZ-
-
*Gel extraction(<nowiki>#</nowiki>20)
+
<html>*Gel extraction(<nowiki>#</nowiki><span class="part_num">20</span></html)
*Luciferase Assays
*Luciferase Assays
**Calibrations (Firefly Luciferase standards)
**Calibrations (Firefly Luciferase standards)
**Background Assay
**Background Assay
-
**Dual Luciferase Assay(<nowiki>#</nowiki>20-3-14-5, <nowiki>#</nowiki>20-3-17-5)
+
<html>**Dual Luciferase Assay(<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html)
-
*Colony PCR(<nowiki>#</nowiki>2-<nowiki>#</nowiki>3-14-5, <nowiki>#</nowiki>3-27-<nowiki>#</nowiki>5, <nowiki>#</nowiki>3-29-<nowiki>#</nowiki>5, <nowiki>#</nowiki>37-<nowiki>#</nowiki>5, <nowiki>#</nowiki>20-<nowiki>#</nowiki>28, <nowiki>#</nowiki>36)
+
<html>*Colony PCR(<nowiki>#</nowiki><span class="part_num">2</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-</html<html><nowiki>#</nowiki><span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">29</span>-</html<html><nowiki>#</nowiki><span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">37</span>-</html<html><nowiki>#</nowiki><span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span>-</html<html><nowiki>#</nowiki><span class="part_num">28</span></html<html>, <nowiki>#</nowiki><span class="part_num">36</span></html)
-
*PCR -> clean-up -> Digest(<nowiki>#</nowiki>3-29-<nowiki>#</nowiki>5, <nowiki>#</nowiki>37-5)
+
<html>*PCR -> clean-up -> Digest(<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">29</span>-</html<html><nowiki>#</nowiki><span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">37</span>-<span class="part_num">5</span></html)
*IPTG-inducted Cell lysis test(IPTG+, LB plate (Positive control))
*IPTG-inducted Cell lysis test(IPTG+, LB plate (Positive control))
-
*Miniprep(<nowiki>#</nowiki>20-3-14-5, <nowiki>#</nowiki>37-5, <nowiki>#</nowiki>36)
+
<html>*Miniprep(<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">37</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">36</span></html)
*Making M9 -> Asp -> all failed(.125%, .25% Agar)
*Making M9 -> Asp -> all failed(.125%, .25% Agar)
-
*Culture for Miniprep(<nowiki>#</nowiki>2-3-14-5)
+
<html>*Culture for Miniprep(<nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html)
<html></div></html>
<html></div></html>
<html><div class="labDay"></html>
<html><div class="labDay"></html>
==='11/09/06(Tue)===
==='11/09/06(Tue)===
-
*Gel extraction(<nowiki>#</nowiki>37-5, <nowiki>#</nowiki>3-29-5)
+
<html>*Gel extraction(<nowiki>#</nowiki><span class="part_num">37</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html)
-
*Miniprep(<nowiki>#</nowiki>2-3-14-5, <nowiki>#</nowiki>20-3-14-5, <nowiki>#</nowiki>20-3-17-5, <nowiki>#</nowiki>36, <nowiki>#</nowiki>3-29-5, <nowiki>#</nowiki>37-5)
+
<html>*Miniprep(<nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">36</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">37</span>-<span class="part_num">5</span></html)
-
*PCR (retry) (Hot-start & Normal PCR) -> Purification -> Digest(<nowiki>#</nowiki>3-29-5_XP, <nowiki>#</nowiki>37-5_ES)
+
<html>*PCR (retry) (Hot-start & Normal PCR) -> Purification -> Digest(<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html<html>_XP, <nowiki>#</nowiki><span class="part_num">37</span>-<span class="part_num">5</span></html_ES)
*PCR (cloning retry)(lexA, uvrBp)
*PCR (cloning retry)(lexA, uvrBp)
*Ligation & Transformation
*Ligation & Transformation
-
**<nowiki>#</nowiki>3-27-<nowiki>#</nowiki>5, <nowiki>#</nowiki>3-30-<nowiki>#</nowiki>5, <nowiki>#</nowiki>2-3-11-5-pSB1AK3
+
<html>**<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-</html<html><nowiki>#</nowiki><span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">30</span>-</html<html><nowiki>#</nowiki><span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span>-</htmlpSB1AK3
-
**<nowiki>#</nowiki>5, pSB1AK3 (N.C.)
+
<html>**<nowiki>#</nowiki><span class="part_num">5</span></html, pSB1AK3 (N.C.)
-
*Culture for GFP live-imaging (<nowiki>#</nowiki>2-9 WT/cheZ-) -> 4℃ storage
+
<html>*Culture for GFP live-imaging (<nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">9</span></html WT/cheZ-) -> 4℃ storage
*Ninhydrin sol. preparation (Not dissolvable!) -> 4℃ storage
*Ninhydrin sol. preparation (Not dissolvable!) -> 4℃ storage
<html></div></html>
<html></div></html>
Line 851: Line 851:
<html><div class="labDay"></html>
<html><div class="labDay"></html>
==='11/09/07(Wed)===
==='11/09/07(Wed)===
-
*Colony PCR(<nowiki>#</nowiki>3-27-5, <nowiki>#</nowiki>3-30-5)
+
<html>*Colony PCR(<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">30</span>-<span class="part_num">5</span></html)
-
*Digest(<nowiki>#</nowiki>36_SP)
+
<html>*Digest(<nowiki>#</nowiki><span class="part_num">36</span></html_SP)
-
*Culture from master plate(<nowiki>#</nowiki>36, <nowiki>#</nowiki>3-29-5, <nowiki>#</nowiki>37-5)
+
<html>*Culture from master plate(<nowiki>#</nowiki><span class="part_num">36</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">37</span>-<span class="part_num">5</span></html)
-
*Miniprep(<nowiki>#</nowiki>36, <nowiki>#</nowiki>3-29-5, <nowiki>#</nowiki>37-5, <nowiki>#</nowiki>3-27-5 (failed))
+
<html>*Miniprep(<nowiki>#</nowiki><span class="part_num">36</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">37</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-<span class="part_num">5</span></html (failed))
*PCR purification & Digest(lexA_XP, uvrBp_ES)
*PCR purification & Digest(lexA_XP, uvrBp_ES)
-
*Gel extraction(<nowiki>#</nowiki>3-29-5_XP, <nowiki>#</nowiki>37-5_ES, pSB1AK3_EP, <nowiki>#</nowiki>36_SP)
+
<html>*Gel extraction(<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html<html>_XP, <nowiki>#</nowiki><span class="part_num">37</span>-<span class="part_num">5</span></html<html>_ES, pSB1AK3_EP, <nowiki>#</nowiki><span class="part_num">36</span></html_SP)
-
*PCR amplification -> Digest(<nowiki>#</nowiki>3-14-5, <nowiki>#</nowiki>3-29-5, <nowiki>#</nowiki>37-5, <nowiki>#</nowiki>3-27-5)
+
<html>*PCR amplification -> Digest(<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">37</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-<span class="part_num">5</span></html)
-
*Digest(<nowiki>#</nowiki>36_SP (re), <nowiki>#</nowiki>2_SP, <nowiki>#</nowiki>2-3-17-5_EX, <nowiki>#</nowiki>3-14-5_ES, <nowiki>#</nowiki>34_SP)
+
<html>*Digest(<nowiki>#</nowiki><span class="part_num">36</span></html<html>_SP (re), <nowiki>#</nowiki><span class="part_num">2</span></html<html>_SP, <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>_EX, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>_ES, <nowiki>#</nowiki><span class="part_num">34</span></html_SP)
-
*Culture for Miniprep(<nowiki>#</nowiki>2, <nowiki>#</nowiki>34, <nowiki>#</nowiki>36, <nowiki>#</nowiki>3-27-5, <nowiki>#</nowiki>3-14-5, <nowiki>#</nowiki>2-3-17-5)
+
<html>*Culture for Miniprep(<nowiki>#</nowiki><span class="part_num">2</span></html<html>, <nowiki>#</nowiki><span class="part_num">34</span></html<html>, <nowiki>#</nowiki><span class="part_num">36</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html)
Ligation & Transformation
Ligation & Transformation
-
**<nowiki>#</nowiki>33-<nowiki>#</nowiki>3-14-5, <nowiki>#</nowiki>34-<nowiki>#</nowiki>3-14-5, <nowiki>#</nowiki>36-<nowiki>#</nowiki>3-14-5, <nowiki>#</nowiki>2-<nowiki>#</nowiki>3-29-5, <nowiki>#</nowiki>20-<nowiki>#</nowiki>3-29-5, <nowiki>#</nowiki>3-<nowiki>#</nowiki>37-5, <nowiki>#</nowiki>2-3-11-5-pSB1AK3, <nowiki>#</nowiki>1-<nowiki>#</nowiki>3-17-5
+
<html>**<nowiki>#</nowiki><span class="part_num">33</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">34</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">36</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">2</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-</html<html><nowiki>#</nowiki><span class="part_num">37</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span>-</html<html>pSB1AK3, <nowiki>#</nowiki><span class="part_num">1</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html
-
**<nowiki>#</nowiki>33, <nowiki>#</nowiki>34, <nowiki>#</nowiki>36, <nowiki>#</nowiki>1, <nowiki>#</nowiki>2, <nowiki>#</nowiki>20, <nowiki>#</nowiki>3, pSB1AK3 (N.C.)
+
<html>**<nowiki>#</nowiki><span class="part_num">33</span></html<html>, <nowiki>#</nowiki><span class="part_num">34</span></html<html>, <nowiki>#</nowiki><span class="part_num">36</span></html<html>, <nowiki>#</nowiki><span class="part_num">1</span></html<html>, <nowiki>#</nowiki><span class="part_num">2</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span></html, pSB1AK3 (N.C.)
*Ninhydrin stock solution preparation
*Ninhydrin stock solution preparation
**Asp conc. check (it took 5 min at 80C)
**Asp conc. check (it took 5 min at 80C)
Line 871: Line 871:
==='11/09/08(Thu)===
==='11/09/08(Thu)===
*Making competent cell (WT), LB(amp) plate
*Making competent cell (WT), LB(amp) plate
-
*Frozen stocks(<nowiki>#</nowiki>36, <nowiki>#</nowiki>3-14-5, <nowiki>#</nowiki>3-27-5)
+
<html>*Frozen stocks(<nowiki>#</nowiki><span class="part_num">36</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-<span class="part_num">5</span></html)
-
*Colony PCR(<nowiki>#</nowiki>33-3-14-5, <nowiki>#</nowiki>34-3-14-5, <nowiki>#</nowiki>36-3-14-5, <nowiki>#</nowiki>20-3-29-5, <nowiki>#</nowiki>2-3-11-5(psB1AK3))
+
<html>*Colony PCR(<nowiki>#</nowiki><span class="part_num">33</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">34</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html(psB1AK3))
-
*Miniprep(<nowiki>#</nowiki>2, <nowiki>#</nowiki>34, <nowiki>#</nowiki>36, <nowiki>#</nowiki>2-3-17-5, <nowiki>#</nowiki>3-27-5, <nowiki>#</nowiki>3-14-5)
+
<html>*Miniprep(<nowiki>#</nowiki><span class="part_num">2</span></html<html>, <nowiki>#</nowiki><span class="part_num">34</span></html<html>, <nowiki>#</nowiki><span class="part_num">36</span></html<html>, <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html)
*Gel extraction
*Gel extraction
-
**PCR product: <nowiki>#</nowiki>35_SP, <nowiki>#</nowiki>31_XP, <nowiki>#</nowiki>3-14-5_XP, <nowiki>#</nowiki>3-27-5_XP, <nowiki>#</nowiki>3-29-5_XP, <nowiki>#</nowiki>37-5_XP
+
<html>**PCR product: <nowiki>#</nowiki><span class="part_num">35</span></html<html>_SP, <nowiki>#</nowiki><span class="part_num">31</span></html<html>_XP, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>_XP, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-<span class="part_num">5</span></html<html>_XP, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html<html>_XP, <nowiki>#</nowiki><span class="part_num">37</span>-<span class="part_num">5</span></html_XP
-
**Miniprep product: <nowiki>#</nowiki>2_SP, <nowiki>#</nowiki>34_SP, <nowiki>#</nowiki>36_SP, <nowiki>#</nowiki>2-3-17-5_EX, <nowiki>#</nowiki>3-14-5_ES
+
<html>**Miniprep product: <nowiki>#</nowiki><span class="part_num">2</span></html<html>_SP, <nowiki>#</nowiki><span class="part_num">34</span></html<html>_SP, <nowiki>#</nowiki><span class="part_num">36</span></html<html>_SP, <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>_EX, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html_ES
-
*PCR amplification(<nowiki>#</nowiki>34-3-14-5, <nowiki>#</nowiki>36-3-14-5, <nowiki>#</nowiki>20-3-29-5, <nowiki>#</nowiki>20-3-14-5)
+
<html>*PCR amplification(<nowiki>#</nowiki><span class="part_num">34</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html)
-
*PCR for Sequencing -> Store at -20C(<nowiki>#</nowiki>33-3-11-5, <nowiki>#</nowiki>34-3-14-5, <nowiki>#</nowiki>20-3-29-5, <nowiki>#</nowiki>37-5)
+
<html>*PCR for Sequencing -> Store at -20C(<nowiki>#</nowiki><span class="part_num">33</span>-<span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">34</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">37</span>-<span class="part_num">5</span></html)
-
*Ligation(<nowiki>#</nowiki>35_ES-psB1AK3_ES, <nowiki>#</nowiki>31_XP-psB1A2_XP, <nowiki>#</nowiki>31_XP-psB1AK3_XP, <nowiki>#</nowiki>3-<nowiki>#</nowiki>37-5, <nowiki>#</nowiki>36-3-29-5, <nowiki>#</nowiki>3-14-5_ES-<nowiki>#</nowiki>2-3-17-5_EX, <nowiki>#</nowiki>20-<nowiki>#</nowiki>3-27-5)
+
<html>*Ligation(<nowiki>#</nowiki><span class="part_num">35</span></html<html>_ES-psB1AK3_ES, <nowiki>#</nowiki><span class="part_num">31</span></html<html>_XP-psB1A2_XP, <nowiki>#</nowiki><span class="part_num">31</span></html<html>_XP-psB1AK3_XP, <nowiki>#</nowiki><span class="part_num">3</span>-</html<html><nowiki>#</nowiki><span class="part_num">37</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>_ES-<nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>_EX, <nowiki>#</nowiki><span class="part_num">20</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-<span class="part_num">5</span></html)
-
*Culture for Miniprep(<nowiki>#</nowiki>34-3-17-5, <nowiki>#</nowiki>36-3-14-5, <nowiki>#</nowiki>20-3-29-5, <nowiki>#</nowiki>2-3-11-5)
+
<html>*Culture for Miniprep(<nowiki>#</nowiki><span class="part_num">34</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html)
*Digest
*Digest
-
**PCR products: <nowiki>#</nowiki>34-3-14-5_ES, <nowiki>#</nowiki>36-3-14-5_ES, <nowiki>#</nowiki>20-3-14-5_ES
+
<html>**PCR products: <nowiki>#</nowiki><span class="part_num">34</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>_ES, <nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>_ES, <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html_ES
**pSB1C3_EP
**pSB1C3_EP
*Asp Gradient test
*Asp Gradient test
Line 890: Line 890:
==='11/09/09(Fri)===
==='11/09/09(Fri)===
*Making competent cell (WT), TB
*Making competent cell (WT), TB
-
*Colony PCR(<nowiki>#</nowiki>35-pSB1AK3 (failed), <nowiki>#</nowiki>31-pSB1AK3, <nowiki>#</nowiki>3-<nowiki>#</nowiki>37-5, <nowiki>#</nowiki>36-<nowiki>#</nowiki>3-29-5, <nowiki>#</nowiki>3-14-5-<nowiki>#</nowiki>2-3-17-5, <nowiki>#</nowiki>20-3-27-5(failed))
+
<html>*Colony PCR(<nowiki>#</nowiki><span class="part_num">35</span>-</html<html>pSB1AK3 (failed), <nowiki>#</nowiki><span class="part_num">31</span>-</html<html>pSB1AK3, <nowiki>#</nowiki><span class="part_num">3</span>-</html<html><nowiki>#</nowiki><span class="part_num">37</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">36</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-</html<html><nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">27</span>-<span class="part_num">5</span></html(failed))
*PCR amplification
*PCR amplification
-
**From Miniprep : <nowiki>#</nowiki>3-14-5, <nowiki>#</nowiki>3-17-5
+
<html>**From Miniprep : <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html
-
**From Colony PCR : <nowiki>#</nowiki>31, <nowiki>#</nowiki>3-37-5, <nowiki>#</nowiki>36-3-29-5, <nowiki>#</nowiki>3-14-5-2-3-17-5 (failed)
+
<html>**From Colony PCR : <nowiki>#</nowiki><span class="part_num">31</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html (failed)
*Digest
*Digest
-
**Miniprep product: <nowiki>#</nowiki>3-11-5_EP
+
<html>**Miniprep product: <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html_EP
-
**PCR-purified product: <nowiki>#</nowiki>3-14-5_EP, <nowiki>#</nowiki>3-17-5_EP, <nowiki>#</nowiki>31_EP, <nowiki>#</nowiki>3-37-5_XP, <nowiki>#</nowiki>36-3-29-5_ES
+
<html>**PCR-purified product: <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>_EP, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>_EP, <nowiki>#</nowiki><span class="part_num">31</span></html<html>_EP, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html<html>_XP, <nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html_ES
-
*Miniprep(<nowiki>#</nowiki>34-3-14-5, <nowiki>#</nowiki>36-3-14-5, <nowiki>#</nowiki>20-3-29-5, <nowiki>#</nowiki>2-3-11-5 (pSB1AK3))
+
<html>*Miniprep(<nowiki>#</nowiki><span class="part_num">34</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html (pSB1AK3))
-
*Gel extraction(<nowiki>#</nowiki>34-3-14-5_ES, <nowiki>#</nowiki>36-3-14-5_ES, <nowiki>#</nowiki>20-3-14-5_ES, <nowiki>#</nowiki>3-11-5_EP)
+
<html>*Gel extraction(<nowiki>#</nowiki><span class="part_num">34</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>_ES, <nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>_ES, <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>_ES, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html_EP)
*Ligation
*Ligation
-
**<nowiki>#</nowiki>3-11-5_EP-pSB1C3_EP, <nowiki>#</nowiki>29_XP-pSB1AK3_XP
+
<html>**<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html<html>_EP-pSB1C3_EP, <nowiki>#</nowiki><span class="part_num">29</span></html_XP-pSB1AK3_XP
-
**<nowiki>#</nowiki>36-3-14-5_ES-<nowiki>#</nowiki>2-3-17-5_EX, <nowiki>#</nowiki>20_SP-<nowiki>#</nowiki>3-27-5_XP(retry)
+
<html>**<nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>_ES-<nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>_EX, <nowiki>#</nowiki><span class="part_num">20</span></html<html>_SP-<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-<span class="part_num">5</span></html_XP(retry)
*Comp. check
*Comp. check
-
**<nowiki>#</nowiki>2-3-11-5 (pSB1AK3) into 0908 WT comp.
+
<html>**<nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html (pSB1AK3) into 0908 WT comp.
-
**<nowiki>#</nowiki>20-3-29-5 into 0909 WT comp.
+
<html>**<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html into 0909 WT comp.
-
**<nowiki>#</nowiki>20-3-29-5 into 0802 cheZ- comp.
+
<html>**<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html into 0802 cheZ- comp.
*Part cloning(BBa_J04450 (IPTG-induced RFP reporter on pSB1C3))
*Part cloning(BBa_J04450 (IPTG-induced RFP reporter on pSB1C3))
-
*Culture for Miniprep(<nowiki>#</nowiki>31-pSB1AK3, <nowiki>#</nowiki>3-37-5, <nowiki>#</nowiki>36-3-29-5, <nowiki>#</nowiki>3-14-5-2-3-17-5)
+
<html>*Culture for Miniprep(<nowiki>#</nowiki><span class="part_num">31</span>-</html<html>pSB1AK3, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html)
-
*UV irradiation -> Luciferase Assay(<nowiki>#</nowiki>24-3-17-5, <nowiki>#</nowiki>34-3-17-5)
+
<html>*UV irradiation -> Luciferase Assay(<nowiki>#</nowiki><span class="part_num">24</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">34</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html)
*Asp Gradient test
*Asp Gradient test
-
*CleanSEQ -> Sequencing(<nowiki>#</nowiki>33-3-11-5, <nowiki>#</nowiki>34-3-14-5, <nowiki>#</nowiki>20-3-29-5, <nowiki>#</nowiki>37-5)
+
<html>*CleanSEQ -> Sequencing(<nowiki>#</nowiki><span class="part_num">33</span>-<span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">34</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">37</span>-<span class="part_num">5</span></html)
<html></div></html>
<html></div></html>
Line 916: Line 916:
==='11/09/10(Sat)===
==='11/09/10(Sat)===
*Culture plate storage (4℃)
*Culture plate storage (4℃)
-
*Miniprep(<nowiki>#</nowiki>31-pSB1AK3, <nowiki>#</nowiki>3-37-5, <nowiki>#</nowiki>36-3-29-5, <nowiki>#</nowiki>3-14-5-2-3-17-5)
+
<html>*Miniprep(<nowiki>#</nowiki><span class="part_num">31</span>-</html<html>pSB1AK3, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html)
-
*Gel extraction(<nowiki>#</nowiki>3-14-5_EP, <nowiki>#</nowiki>3-17-5_EP, <nowiki>#</nowiki>31_EP, <nowiki>#</nowiki>3-37-5_XP, <nowiki>#</nowiki>36-3-29-5_ES)
+
<html>*Gel extraction(<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>_EP, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>_EP, <nowiki>#</nowiki><span class="part_num">31</span></html<html>_EP, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html<html>_XP, <nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html_ES)
-
*Colony PCR(<nowiki>#</nowiki>36-3-14-5-<nowiki>#</nowiki>2-3-17-5 (Maybe Ligation was FAILURE , estimated length is 1000-1500 by electrophoresis))
+
<html>*Colony PCR(<nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-</html<html><nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html (Maybe Ligation was FAILURE , estimated length is 1000-1500 by electrophoresis))
-
*Ligation(<nowiki>#</nowiki>20_SP-<nowiki>#</nowiki>3-37-5_XP)
+
<html>*Ligation(<nowiki>#</nowiki><span class="part_num">20</span></html<html>_SP-<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html_XP)
<html></div></html>
<html></div></html>
Line 925: Line 925:
==='11/09/11(Sun)===
==='11/09/11(Sun)===
*Digest from Miniprep products
*Digest from Miniprep products
-
**<nowiki>#</nowiki>3-14-5-2-3-17-5_XP
+
<html>**<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html_XP
-
**<nowiki>#</nowiki>36-3-14-5_SP, <nowiki>#</nowiki>20_SP -> O.N.
+
<html>**<nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>_SP, <nowiki>#</nowiki><span class="part_num">20</span></html_SP -> O.N.
*Colony PCR
*Colony PCR
-
**<nowiki>#</nowiki>3-11-5 (pSB1C3), <nowiki>#</nowiki>29 (pSB1AK3), BBa_J04450 (pSB1C3)
+
<html>**<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html<html> (pSB1C3), <nowiki>#</nowiki><span class="part_num">29</span></html (pSB1AK3), BBa_J04450 (pSB1C3)
-
**<nowiki>#</nowiki>20-<nowiki>#</nowiki>3-27-5(failed), <nowiki>#</nowiki>20-<nowiki>#</nowiki>3-37-5, <nowiki>#</nowiki>36-<nowiki>#</nowiki>3-14-5-2-3-17-5
+
<html>**<nowiki>#</nowiki><span class="part_num">20</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-<span class="part_num">5</span></html<html>(failed), <nowiki>#</nowiki><span class="part_num">20</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">36</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html
-
*Gel extraction(<nowiki>#</nowiki>3-14-5-2-3-17-5_XP)
+
<html>*Gel extraction(<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html_XP)
*Culture for Miniprep
*Culture for Miniprep
-
**From Master plate : <nowiki>#</nowiki>20-3-37-5, <nowiki>#</nowiki>29 (pSB1AK3), BBa_J04450 (pSB1C3)
+
<html>**From Master plate : <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">29</span></html (pSB1AK3), BBa_J04450 (pSB1C3)
-
**From plate stock : <nowiki>#</nowiki>20
+
<html>**From plate stock : <nowiki>#</nowiki><span class="part_num">20</span></html
-
**From frozen stock : <nowiki>#</nowiki>2-3-17-5
+
<html>**From frozen stock : <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html
-
*Miniprep( <nowiki>#</nowiki>36-3-14-5-2-3-17-5)
+
<html>*Miniprep( <nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html)
-
*Ligation(<nowiki>#</nowiki>20_SP-<nowiki>#</nowiki>3-14-5-2-3-17-5_XP, <nowiki>#</nowiki>1_SP-<nowiki>#</nowiki>3-14-5-2-3-17-5_XP)
+
<html>*Ligation(<nowiki>#</nowiki><span class="part_num">20</span></html<html>_SP-<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>_XP, <nowiki>#</nowiki><span class="part_num">1</span></html<html>_SP-<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html_XP)
*Direct Ligation
*Direct Ligation
-
**i.PCR amplification -> Digest for >1h -> Heat kill for 20min (<nowiki>#</nowiki>20-3-37-5_XP, <nowiki>#</nowiki>36-3-14-5-2-3-17-5_ES)
+
<html>**i.PCR amplification -> Digest for >1h -> Heat kill for 20min (<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html<html>_XP, <nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html_ES)
-
**ii.Digest for >1h -> Heat kill for 20min (<nowiki>#</nowiki>36-3-14-5-2-3-17-5_SP, pSB1A3_EP, <nowiki>#</nowiki>2-3-17-5_EX)
+
<html>**ii.Digest for >1h -> Heat kill for 20min (<nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>_SP, pSB1A3_EP, <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html_EX)
-
**iii.Ligation for 30min (<nowiki>#</nowiki>20-3-14-5_ES-<nowiki>#</nowiki>2-3-17-5_EX, <nowiki>#</nowiki>36-3-14-5-2-3-17-5_SP-<nowiki>#</nowiki>20-3-37-5_XP, <nowiki>#</nowiki>36-3-14-5-2-3-17-5_ES-<nowiki>#</nowiki>20-3-37-5_XP-pSB1A3_EP)
+
<html>**iii.Ligation for 30min (<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>_ES-<nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>_EX, <nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>_SP-<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html<html>_XP, <nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>_ES-<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html_XP-pSB1A3_EP)
**iv.Transformation
**iv.Transformation
*Making 0.125% agar LB amp plate (IPTG 1, 10, 30, 100uM)
*Making 0.125% agar LB amp plate (IPTG 1, 10, 30, 100uM)
*Cell Diffusion Assay
*Cell Diffusion Assay
-
**<nowiki>#</nowiki>20-3-29-5 WT (IPTG 1, 10, 30, 100uM)
+
<html>**<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html WT (IPTG 1, 10, 30, 100uM)
-
**<nowiki>#</nowiki>20-3-29-5 cheZ-/- (IPTG 1, 10, 30, 100uM)
+
<html>**<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html cheZ-/- (IPTG 1, 10, 30, 100uM)
**WT
**WT
**cheZ-/-
**cheZ-/-
Line 953: Line 953:
==='11/9/12 (Mon)===
==='11/9/12 (Mon)===
*Colony PCR
*Colony PCR
-
**<nowiki>#</nowiki>20-<nowiki>#</nowiki>3-14-5-2-3-17-5
+
<html>**<nowiki>#</nowiki><span class="part_num">20</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html
-
**<nowiki>#</nowiki>20-3-14-5-<nowiki>#</nowiki>2-3-17-5
+
<html>**<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-</html<html><nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html
-
**<nowiki>#</nowiki>1-<nowiki>#</nowiki>3-14-5-2-3-17-5
+
<html>**<nowiki>#</nowiki><span class="part_num">1</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html
-
**<nowiki>#</nowiki>36-3-14-5-2-3-17-5-<nowiki>#</nowiki>20-3-37-5 (no colony)
+
<html>**<nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span>-</html<html><nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html (no colony)
-
**<nowiki>#</nowiki>36-3-14-5-2-3-17-5-<nowiki>#</nowiki>20-3-37-5-pSB1A3 (PCR failed?)
+
<html>**<nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span>-</html<html><nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span>-</htmlpSB1A3 (PCR failed?)
-
Note: <nowiki>#</nowiki>20-3-37-5 colonies on the master-plate are RED. Maybe <nowiki>#</nowiki>2-3-11-5...<br>
+
<html>Note: <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html<html> colonies on the master-plate are RED. Maybe <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html...<br>
-
Note: <nowiki>#</nowiki>36-3-14-5-2-3-17-5-<nowiki>#</nowiki>20-3-37-5-pSB1A3 PCR amplification doesn't work. Seems failed extension...
+
<html>Note: <nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span>-</html<html><nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span>-</htmlpSB1A3 PCR amplification doesn't work. Seems failed extension...
*PCR amplification
*PCR amplification
-
**From master plate : <nowiki>#</nowiki>20-3-37-5
+
<html>**From master plate : <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html
-
**From 09/11 Miniprep product : <nowiki>#</nowiki>36-3-14-5-2-3-17-5
+
<html>**From 09/11 Miniprep product : <nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html
-
Note: Only one <nowiki>#</nowiki>20-3-37-5 colony is NOT RED.
+
<html>Note: Only one <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html colony is NOT RED.
-
*Miniprep(<nowiki>#</nowiki>20, <nowiki>#</nowiki>29 (pSB1AK3), <nowiki>#</nowiki>2-3-17-5, <nowiki>#</nowiki>2-3-37-5, BBa_J04450 (pSB1C3))
+
<html>*Miniprep(<nowiki>#</nowiki><span class="part_num">20</span></html<html>, <nowiki>#</nowiki><span class="part_num">29</span></html<html> (pSB1AK3), <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html, BBa_J04450 (pSB1C3))
*Digest
*Digest
-
**From PCR : <nowiki>#</nowiki>36-3-14-5-2-3-17-5_ES, <nowiki>#</nowiki>20-3-37-5_XP
+
<html>**From PCR : <nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>_ES, <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html_XP
**pSB1A3_EP, pSB1C3_EP
**pSB1A3_EP, pSB1C3_EP
-
**From Miniprep : <nowiki>#</nowiki>20-3-37-5_XP
+
<html>**From Miniprep : <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html_XP
-
**J04450_EP, *<nowiki>#</nowiki>2-9_XP, <nowiki>#</nowiki>20-3-29-5_ES
+
<html>**J04450_EP, *<nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">9</span></html<html>_XP, <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html_ES
*Gel extraction
*Gel extraction
-
**<nowiki>#</nowiki>20_SP, <nowiki>#</nowiki>36-3-14-5_SP
+
<html>**<nowiki>#</nowiki><span class="part_num">20</span></html<html>_SP, <nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html_SP
-
**From OverNight digests : <nowiki>#</nowiki>2-3-17-5_EX
+
<html>**From OverNight digests : <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html_EX
-
**<nowiki>#</nowiki>36-3-14-5-2-3-17-5_ES
+
<html>**<nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html_ES
-
**From today's PCR digests : <nowiki>#</nowiki>20-3-37-5_XP
+
<html>**From today's PCR digests : <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html_XP
-
*Culture for Miniprep(<nowiki>#</nowiki>20-3-37-5 from 0911 master plate)
+
<html>*Culture for Miniprep(<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html from 0911 master plate)
-
*Dual Luciferase Assay(<nowiki>#</nowiki>20-3-14-5-2-3-17-5, <nowiki>#</nowiki>1-3-14-5-2-3-17-5, <nowiki>#</nowiki>36-3-14-5-2-3-17-5-20-3-37-5-pSB1A3)
+
<html>*Dual Luciferase Assay(<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">1</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span>-<span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span>-</htmlpSB1A3)
*Ligation
*Ligation
-
**<nowiki>#</nowiki>36-3-14-5-2-3-17-5_ES-<nowiki>#</nowiki>20-3-37-5_XP-pSB1A3_EP
+
<html>**<nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>_ES-<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html_XP-pSB1A3_EP
-
**<nowiki>#</nowiki>36-3-14-5-2-3-17-5_ES-<nowiki>#</nowiki>20-3-37-5_XP-pSB1C3_EP
+
<html>**<nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>_ES-<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html_XP-pSB1C3_EP
-
**<nowiki>#</nowiki>3-27-5_XP-<nowiki>#</nowiki>20_SP
+
<html>**<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-<span class="part_num">5</span></html<html>_XP-<nowiki>#</nowiki><span class="part_num">20</span></html_SP
-
**<nowiki>#</nowiki>36-3-29-5_ES-<nowiki>#</nowiki>20-3-37-5_XP-pSB1AK3_EP
+
<html>**<nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html<html>_ES-<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html_XP-pSB1AK3_EP
<html></div></html>
<html></div></html>
Line 987: Line 987:
==='11/9/13 (Tue)===
==='11/9/13 (Tue)===
*Colony PCR
*Colony PCR
-
**<nowiki>#</nowiki>36-3-14-5-2-3-17-5_ES-<nowiki>#</nowiki>20-3-37-5_XP-pSB1A3_EP
+
<html>**<nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>_ES-<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html_XP-pSB1A3_EP
-
**<nowiki>#</nowiki>36-3-14-5-2-3-17-5_ES-<nowiki>#</nowiki>20-3-37-5_XP-pSB1C3_EP (failed)
+
<html>**<nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>_ES-<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html_XP-pSB1C3_EP (failed)
-
**<nowiki>#</nowiki>3-27-5_XP-<nowiki>#</nowiki>20_SP (failed)
+
<html>**<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-<span class="part_num">5</span></html<html>_XP-<nowiki>#</nowiki><span class="part_num">20</span></html_SP (failed)
-
**<nowiki>#</nowiki>36-3-29-5_ES-<nowiki>#</nowiki>20-3-37-5_XP-pSB1AK3_EP
+
<html>**<nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html<html>_ES-<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html_XP-pSB1AK3_EP
*Culture for Luciferase Assay
*Culture for Luciferase Assay
-
**<nowiki>#</nowiki>36-3-14-5-2-3-17-5-20-3-37-5(pSB1A3, pSB1C3) (IPTG 0, 1, 10, 38, 100uM)
+
<html>**<nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span>-<span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html(pSB1A3, pSB1C3) (IPTG 0, 1, 10, 38, 100uM)
-
**<nowiki>#</nowiki>20-3-14-5-2-3-17-5 (IPTG 0, 1, 10, 38, 100uM)
+
<html>**<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html (IPTG 0, 1, 10, 38, 100uM)
-
**<nowiki>#</nowiki>1-3-14-5-2-3-17-5 (IPTG 0uM)<br>
+
<html>**<nowiki>#</nowiki><span class="part_num">1</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html (IPTG 0uM)<br>
Note: Seemes OD600 should NOT exceed 0.4~0.5, or intracellular luciferase will be saturated.
Note: Seemes OD600 should NOT exceed 0.4~0.5, or intracellular luciferase will be saturated.
*Miniprep.
*Miniprep.
-
**<nowiki>#</nowiki>20-3-14-5-2-3-17-5
+
<html>**<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html
-
**<nowiki>#</nowiki>1-3-14-5-2-3-17-5
+
<html>**<nowiki>#</nowiki><span class="part_num">1</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html
-
**<nowiki>#</nowiki>20-3-37-5 (from a non-red colony on the master plate)
+
<html>**<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html (from a non-red colony on the master plate)
*Gel extraction
*Gel extraction
-
**<nowiki>#</nowiki>20-3-37-5_XP (from non-red colony)
+
<html>**<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html_XP (from non-red colony)
-
**<nowiki>#</nowiki>20-3-29-5_ES(failed)
+
<html>**<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html_ES(failed)
-
**<nowiki>#</nowiki>2-9_XP, pSB1C3_EP
+
<html>**<nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">9</span></html_XP, pSB1C3_EP
-
Note: <nowiki>#</nowiki>20-3-29-5 was not cut!
+
<html>Note: <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html was not cut!
*Dual Luciferase Assay
*Dual Luciferase Assay
-
**<nowiki>#</nowiki>1-3-14-5-2-3-17-5 (IPTG 0uM)
+
<html>**<nowiki>#</nowiki><span class="part_num">1</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html (IPTG 0uM)
-
**<nowiki>#</nowiki>20-3-14-5-2-3-17-5 (IPTG 0, 1, 10, 38, 100uM)
+
<html>**<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html (IPTG 0, 1, 10, 38, 100uM)
-
**<nowiki>#</nowiki>36-3-14-5-2-3-17-5-20-3-37-5 (<nowiki>#</nowiki>2-3-11-5?) (IPTG 0, 1, 10, 38, 100uM)
+
<html>**<nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span>-<span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html<html> (<nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html?) (IPTG 0, 1, 10, 38, 100uM)
*Sequencing preparation
*Sequencing preparation
-
**<nowiki>#</nowiki>20-3-37-5 (from a non-red colony on the master plate)
+
<html>**<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html (from a non-red colony on the master plate)
-
**<nowiki>#</nowiki>20-3-29-5
+
<html>**<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html
-
**<nowiki>#</nowiki>3-27-5
+
<html>**<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-<span class="part_num">5</span></html
-
**<nowiki>#</nowiki>31
+
<html>**<nowiki>#</nowiki><span class="part_num">31</span></html
*Digest
*Digest
-
**<nowiki>#</nowiki>20_E
+
<html>**<nowiki>#</nowiki><span class="part_num">20</span></html_E
-
**<nowiki>#</nowiki>3-29-5_S (from MP products) (cut check)
+
<html>**<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html_S (from MP products) (cut check)
*Ligation
*Ligation
-
**<nowiki>#</nowiki>20_SP-<nowiki>#</nowiki>3-27-5_XP
+
<html>**<nowiki>#</nowiki><span class="part_num">20</span></html<html>_SP-<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-<span class="part_num">5</span></html_XP
*Transformation
*Transformation
-
**<nowiki>#</nowiki>3-14-5-2-3-17-5
+
<html>**<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html
-
**<nowiki>#</nowiki>1-3-14-5-2-3-17-5
+
<html>**<nowiki>#</nowiki><span class="part_num">1</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html
-
**<nowiki>#</nowiki>20-3-14-5-2-3-17-5 (for plate stock)
+
<html>**<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html (for plate stock)
-
**<nowiki>#</nowiki>20-3-37-5 (from a non-red colony on the master plate) (for plasmid check)
+
<html>**<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html (from a non-red colony on the master plate) (for plasmid check)
<html></div></html>
<html></div></html>
Line 1,029: Line 1,029:
==='11/09/14(Wed)===
==='11/09/14(Wed)===
*Colony PCR
*Colony PCR
-
**<nowiki>#</nowiki>3-27-5_XP-<nowiki>#</nowiki>20_SP (failed)
+
<html>**<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-<span class="part_num">5</span></html<html>_XP-<nowiki>#</nowiki><span class="part_num">20</span></html_SP (failed)
*Culture for Luciferase Assay (from plate stocks)
*Culture for Luciferase Assay (from plate stocks)
-
**<nowiki>#</nowiki>20-3-14-5-2-3-17-5 (IPTG 0, 1, 10, 38, 100uM)
+
<html>**<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html (IPTG 0, 1, 10, 38, 100uM)
-
**<nowiki>#</nowiki>1-3-14-5-2-3-17-5 (IPTG 0uM)
+
<html>**<nowiki>#</nowiki><span class="part_num">1</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html (IPTG 0uM)
*Digest
*Digest
-
**<nowiki>#</nowiki>3-14-5, <nowiki>#</nowiki>3-17-5, <nowiki>#</nowiki>3-14-5-2-3-17-5, <nowiki>#</nowiki>1-3-14-5-2-3-17-5, <nowiki>#</nowiki>20-3-14-5-2-3-17-5 (EPcut)
+
<html>**<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">1</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html (EPcut)
-
**<nowiki>#</nowiki>20_SP
+
<html>**<nowiki>#</nowiki><span class="part_num">20</span></html_SP
*Culture for Miniprep.
*Culture for Miniprep.
-
**From plate stock : <nowiki>#</nowiki>20, <nowiki>#</nowiki>20-3-14-5-2-3-17-5, <nowiki>#</nowiki>3-14-5-2-3-17-5, <nowiki>#</nowiki>3-17-5  
+
<html>**From plate stock : <nowiki>#</nowiki><span class="part_num">20</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html
-
**From 09/11 master plate : <nowiki>#</nowiki>3-11-5 (pSB1C3)
+
<html>**From 09/11 master plate : <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html (pSB1C3)
-
*Part cloning(<nowiki>#</nowiki>19: BBa_R0010)
+
<html>*Part cloning(<nowiki>#</nowiki><span class="part_num">19</span></html: BBa_R0010)
*Ligation
*Ligation
-
**<nowiki>#</nowiki>20_SP-<nowiki>#</nowiki>3-29-5_XP
+
<html>**<nowiki>#</nowiki><span class="part_num">20</span></html<html>_SP-<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html_XP
-
**<nowiki>#</nowiki>36-3-14-5-2-3-17-5_ES-<nowiki>#</nowiki>20-3-37-5_XP-pSB1C3
+
<html>**<nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>_ES-<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html_XP-pSB1C3
*Making WT competent cell
*Making WT competent cell
*Dual Luciferase Assay
*Dual Luciferase Assay
-
**<nowiki>#</nowiki>1-3-14-5-2-3-17-5 (IPTG 0uM)
+
<html>**<nowiki>#</nowiki><span class="part_num">1</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html (IPTG 0uM)
-
**<nowiki>#</nowiki>20-3-14-5-2-3-17-5 (IPTG 0, 1, 10, 38, 100uM)
+
<html>**<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html (IPTG 0, 1, 10, 38, 100uM)
*Asp TLC Assay
*Asp TLC Assay
*Asp Diffusion Assay (0.25% Agar)
*Asp Diffusion Assay (0.25% Agar)
*Fumaric Acid (Fum) Sol. preparation
*Fumaric Acid (Fum) Sol. preparation
*Sequencing
*Sequencing
-
**①F⑤R<nowiki>#</nowiki>20-3-37-5 (from a non-red colony on the master plate)
+
<html>**①F⑤R<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html (from a non-red colony on the master plate)
-
**②F⑥R<nowiki>#</nowiki>20-3-29-5 (<nowiki>#</nowiki>2-3-11-5?)
+
<html>**②F⑥R<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html<html> (<nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html?)
-
**③F⑦R<nowiki>#</nowiki>3-27-5
+
<html>**③F⑦R<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-<span class="part_num">5</span></html
-
**④F⑧R<nowiki>#</nowiki>31
+
<html>**④F⑧R<nowiki>#</nowiki><span class="part_num">31</span></html
<html></div></html>
<html></div></html>
<html><div class="labDay"></html>
<html><div class="labDay"></html>
==='11/09/15(Thu)===
==='11/09/15(Thu)===
-
*Colony PCR(<nowiki>#</nowiki>19, <nowiki>#</nowiki>36-3-14-5-2-3-17-5-20-3-37-5 (failed), <nowiki>#</nowiki>20-3-29-5)
+
<html>*Colony PCR(<nowiki>#</nowiki><span class="part_num">19</span></html<html>, <nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span>-<span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html<html> (failed), <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html)
-
*Miniprep(<nowiki>#</nowiki>20, <nowiki>#</nowiki>20-3-14-5-2-3-17-5, <nowiki>#</nowiki>3-14-5-2-3-17-5, <nowiki>#</nowiki>3-17-5)
+
<html>*Miniprep(<nowiki>#</nowiki><span class="part_num">20</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html)
*Gel extraction
*Gel extraction
-
**<nowiki>#</nowiki>3-14-5(failed), <nowiki>#</nowiki>3-17-5, <nowiki>#</nowiki>3-14-5-2-3-17-5, <nowiki>#</nowiki>1-3-14-5-2-3-17-5, <nowiki>#</nowiki>20-3-14-5-2-3-17-5 (EPcut); <nowiki>#</nowiki>20_SP
+
<html>**<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>(failed), <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">1</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html> (EPcut); <nowiki>#</nowiki><span class="part_num">20</span></html_SP
*Making WT competent cell
*Making WT competent cell
*Making LB plates(amp:39, cm:18)
*Making LB plates(amp:39, cm:18)
-
*Culture for Miniprep(<nowiki>#</nowiki>3-11-5 (pSB1C3), <nowiki>#</nowiki>20-3-29-5, <nowiki>#</nowiki>19)
+
<html>*Culture for Miniprep(<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html<html> (pSB1C3), <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">19</span></html)
*Ligation
*Ligation
-
**sulAp(ES)-<nowiki>#</nowiki>3-14-5-2-3-17-5_XP-pSB1C3_PCR digest(EP)
+
<html>**sulAp(ES)-<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html_XP-pSB1C3_PCR digest(EP)
-
**recNp(ES)-<nowiki>#</nowiki>3-14-5-2-3-17-5_XP-pSB1C3_PCR digest(EP)
+
<html>**recNp(ES)-<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html_XP-pSB1C3_PCR digest(EP)
-
**<nowiki>#</nowiki>36-3-14-5-2-3-17-5_ES-<nowiki>#</nowiki>20-3-37-5_XP-pSB1C3_PCR digest(EP)
+
<html>**<nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>_ES-<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html_XP-pSB1C3_PCR digest(EP)
-
**<nowiki>#</nowiki>3-27-5_XP-<nowiki>#</nowiki>20_SP
+
<html>**<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-<span class="part_num">5</span></html<html>_XP-<nowiki>#</nowiki><span class="part_num">20</span></html_SP
-
**<nowiki>#</nowiki>3-17-5_EP-pSB1C3_PCR digest(EP)
+
<html>**<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html_EP-pSB1C3_PCR digest(EP)
-
**<nowiki>#</nowiki>3-14-5_EP-pSB1C3_PCR digest(EP)
+
<html>**<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html_EP-pSB1C3_PCR digest(EP)
-
**<nowiki>#</nowiki>3-14-5-2-3-17-5_EP-pSB1C3_PCR digest(EP)
+
<html>**<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html_EP-pSB1C3_PCR digest(EP)
-
**<nowiki>#</nowiki>20-3-14-5-2-3-17-5_EP-pSB1C3_PCR digest(EP)
+
<html>**<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html_EP-pSB1C3_PCR digest(EP)
-
*Culture for Dual Luciferase Assay(<nowiki>#</nowiki>20-3-14-5-2-3-17-5)
+
<html>*Culture for Dual Luciferase Assay(<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html)
*TLC check (LB, M9)
*TLC check (LB, M9)
*Cell Diffusion Assay
*Cell Diffusion Assay
Line 1,086: Line 1,086:
==='11/09/16(Fri)===
==='11/09/16(Fri)===
*Colony PCR
*Colony PCR
-
**sulAp(ES)-<nowiki>#</nowiki>3-14-5-2-3-17-5_XP-pSB1C3_PCR digest(EP),
+
<html>**sulAp(ES)-<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html_XP-pSB1C3_PCR digest(EP),
-
**recNp(ES)-<nowiki>#</nowiki>3-14-5-2-3-17-5_XP-pSB1C3_PCR digest(EP),
+
<html>**recNp(ES)-<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html_XP-pSB1C3_PCR digest(EP),
-
**<nowiki>#</nowiki>36-3-14-5-2-3-17-5_ES-<nowiki>#</nowiki>20-3-37-5_XP-pSB1C3_PCR digest(EP),
+
<html>**<nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>_ES-<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html_XP-pSB1C3_PCR digest(EP),
-
**<nowiki>#</nowiki>3-27-5_XP-<nowiki>#</nowiki>20_SP,
+
<html>**<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-<span class="part_num">5</span></html<html>_XP-<nowiki>#</nowiki><span class="part_num">20</span></html_SP,
-
**<nowiki>#</nowiki>3-17-5_EP-pSB1C3_PCR digest(EP),
+
<html>**<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html_EP-pSB1C3_PCR digest(EP),
-
**<nowiki>#</nowiki>3-14-5_EP-pSB1C3_PCR digest(EP),
+
<html>**<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html_EP-pSB1C3_PCR digest(EP),
-
**<nowiki>#</nowiki>3-14-5-2-3-17-5_EP-pSB1C3_PCR digest(EP),
+
<html>**<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html_EP-pSB1C3_PCR digest(EP),
-
**<nowiki>#</nowiki>20-3-14-5-2-3-17-5_EP-pSB1C3_PCR digest(EP)
+
<html>**<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html_EP-pSB1C3_PCR digest(EP)
-
**<nowiki>#</nowiki>36-3-14-5-2-3-17-5_ES-<nowiki>#</nowiki>20-3-37-5_XP-pSB1C3_PCR digest(EP) (retry; non-red colonies)
+
<html>**<nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>_ES-<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html_XP-pSB1C3_PCR digest(EP) (retry; non-red colonies)
-
*Miniprep(<nowiki>#</nowiki>3-11-5 (pSB1C3), <nowiki>#</nowiki>20-3-29-5, <nowiki>#</nowiki>19)
+
<html>*Miniprep(<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html<html> (pSB1C3), <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">19</span></html)
-
*PCR amplification(<nowiki>#</nowiki>3-27-5, <nowiki>#</nowiki>36-3-14-5-2-3-17-5, pSB1C3)
+
<html>*PCR amplification(<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html, pSB1C3)
-
*Sequencing prep(<nowiki>#</nowiki>20-3-29-5)
+
<html>*Sequencing prep(<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html)
*Making agarose gel, WT competent cell,  
*Making agarose gel, WT competent cell,  
*Electrophoresis check(pSB1C3_PCR)
*Electrophoresis check(pSB1C3_PCR)
-
*Digest(pSB1C3_ES, pSB1C3_EP, <nowiki>#</nowiki>3-27-5_XP, <nowiki>#</nowiki>36-3-14-5-2-3-17-5_ES)
+
<html>*Digest(pSB1C3_ES, pSB1C3_EP, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-<span class="part_num">5</span></html<html>_XP, <nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html_ES)
*Dual luciferase assay
*Dual luciferase assay
-
**<nowiki>#</nowiki>20-3-14-5-2-3-17-5 (1h, 1.5h culture)(IPTG 0, 1, 10, 100uM)(2.5mL)
+
<html>**<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html (1h, 1.5h culture)(IPTG 0, 1, 10, 100uM)(2.5mL)
*Fumaric Acid (Fum) Sol. preparation
*Fumaric Acid (Fum) Sol. preparation
**TLC test
**TLC test
Line 1,112: Line 1,112:
==='11/09/17(Sat)===
==='11/09/17(Sat)===
*Colony PCR (retry)
*Colony PCR (retry)
-
**<nowiki>#</nowiki>3-14-5, <nowiki>#</nowiki>3-17-5 (pSB1C3)
+
<html>**<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html (pSB1C3)
-
**<nowiki>#</nowiki>36-3-14-5-2-3-17-5-20-3-37-5
+
<html>**<nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span>-<span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html
-
*Culture for Miniprep(<nowiki>#</nowiki>3-14-5, <nowiki>#</nowiki>3-17-5 (pSB1C3))
+
<html>*Culture for Miniprep(<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html (pSB1C3))
-
*Ligation(sulAp-pSB1C3, recNp-pSB1C3, <nowiki>#</nowiki>20-<nowiki>#</nowiki>3-27-5)
+
<html>*Ligation(sulAp-pSB1C3, recNp-pSB1C3, <nowiki>#</nowiki><span class="part_num">20</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-<span class="part_num">5</span></html)
-
*Transformation(<nowiki>#</nowiki>20-3-29-5 into cheZ-)
+
<html>*Transformation(<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html into cheZ-)
*Making medium(.25% Agar. M9& LB each 20 plates)
*Making medium(.25% Agar. M9& LB each 20 plates)
*Cell diffusion assay
*Cell diffusion assay
Line 1,123: Line 1,123:
<html><div class="labDay"></html>
<html><div class="labDay"></html>
==='11/09/18(Sun)===
==='11/09/18(Sun)===
-
*Colony PCR & Culture for Miniprep(<nowiki>#</nowiki>36-3-14-5-2-3-17-5-20-3-37-5, <nowiki>#</nowiki>33-3-14-5-2-3-17-5)
+
<html>*Colony PCR & Culture for Miniprep(<nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span>-<span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">33</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html)
-
*Miniprep(<nowiki>#</nowiki>3-14-5, <nowiki>#</nowiki>3-17-5 (pSB1C3))
+
<html>*Miniprep(<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html (pSB1C3))
-
*Ligation(<nowiki>#</nowiki>20-<nowiki>#</nowiki>3-27-5, recNp-<nowiki>#</nowiki>3-14-5-2-3-17-5, sulAp-pSB1C3, recNp-pSB1C3, <nowiki>#</nowiki>31-pSB1C3)
+
<html>*Ligation(<nowiki>#</nowiki><span class="part_num">20</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-<span class="part_num">5</span></html<html>, recNp-<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>, sulAp-pSB1C3, recNp-pSB1C3, <nowiki>#</nowiki><span class="part_num">31</span>-</htmlpSB1C3)
*Cell diffusion assay
*Cell diffusion assay
**Innoculate colony(WT / cheZ-/- / cheZ-/- + cheZ plasmid)
**Innoculate colony(WT / cheZ-/- / cheZ-/- + cheZ plasmid)
Line 1,133: Line 1,133:
<html><div class="labDay"></html>
<html><div class="labDay"></html>
==='11/09/19(Mon)===
==='11/09/19(Mon)===
-
*Culture for Dual luciferase assay(<nowiki>#</nowiki>36-3-14-5-2-3-17-5-20-3-37-5, <nowiki>#</nowiki>33-3-14-5-2-3-17-5, <nowiki>#</nowiki>1-3-14-5-2-3-17-5, <nowiki>#</nowiki>20-3-14-5-2-3-17-5)
+
<html>*Culture for Dual luciferase assay(<nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span>-<span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">33</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">1</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html)
-
*Miniprep(<nowiki>#</nowiki>36-3-14-5-2-3-17-5-20-3-37-5, <nowiki>#</nowiki>33-3-14-5-2-3-17-5)
+
<html>*Miniprep(<nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span>-<span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">33</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html)
-
*Ligation(<nowiki>#</nowiki>24-<nowiki>#</nowiki>3-14-5-2-3-17-5, <nowiki>#</nowiki>20-<nowiki>#</nowiki>3-27-5)
+
<html>*Ligation(<nowiki>#</nowiki><span class="part_num">24</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-<span class="part_num">5</span></html)
-
*Sequencing(<nowiki>#</nowiki>36-3-14-5-2-3-17-5-20-3-37-5, <nowiki>#</nowiki>33-3-14-5-2-3-17-5, <nowiki>#</nowiki>20-3-29-5)
+
<html>*Sequencing(<nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span>-<span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">33</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html)
-
*Dual luciferase assay(<nowiki>#</nowiki>1~, <nowiki>#</nowiki>20~, <nowiki>#</nowiki>36~, <nowiki>#</nowiki>33~ )
+
<html>*Dual luciferase assay(<nowiki>#</nowiki><span class="part_num">1</span></html<html>~, <nowiki>#</nowiki><span class="part_num">20</span></html<html>~, <nowiki>#</nowiki><span class="part_num">36</span></html<html>~, <nowiki>#</nowiki><span class="part_num">33</span></html~ )
*Asp racing assay(Innoculate colonies)
*Asp racing assay(Innoculate colonies)
*GFP imaging assay<html></div></html>
*GFP imaging assay<html></div></html>
Line 1,143: Line 1,143:
<html><div class="labDay"></html>
<html><div class="labDay"></html>
==='11/09/20(Tue)===
==='11/09/20(Tue)===
-
*colony PCR(20-3-27-5, <nowiki>#</nowiki>24-3-14-5-2-3-17-5)
+
<html>*colony PCR(20-3-27-5, <nowiki>#</nowiki><span class="part_num">24</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html)
-
*Gel extraction(<nowiki>#</nowiki>3-27-5_XP)
+
<html>*Gel extraction(<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-<span class="part_num">5</span></html_XP)
-
*PCR amplification -> Digest(<nowiki>#</nowiki>29_EP, <nowiki>#</nowiki>20-3-29-5_EP, <nowiki>#</nowiki>3-29-5_EP)
+
<html>*PCR amplification -> Digest(<nowiki>#</nowiki><span class="part_num">29</span></html<html>_EP, <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html<html>_EP, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html_EP)
-
*Digest(<nowiki>#</nowiki>20_SP)
+
<html>*Digest(<nowiki>#</nowiki><span class="part_num">20</span></html_SP)
*Sequencing prep.
*Sequencing prep.
*Ethanol precipitation (10ul TE)
*Ethanol precipitation (10ul TE)
-
**<nowiki>#</nowiki>3-11-5(pSB1C3): 144.5ng/uL
+
<html>**<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html(pSB1C3): 144.5ng/uL
-
**<nowiki>#</nowiki>3-14-5: 728.0ng/uL
+
<html>**<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html: 728.0ng/uL
-
**<nowiki>#</nowiki>3-17-5(pSB1C3): 505.7ng/uL
+
<html>**<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html(pSB1C3): 505.7ng/uL
-
*Ligation(<nowiki>#</nowiki>31_EP-pSB1C3_EP, <nowiki>#</nowiki>36-3-29-5_ES-<nowiki>#</nowiki>20-3-37-5_XP-pSB1C3_EP)
+
<html>*Ligation(<nowiki>#</nowiki><span class="part_num">31</span></html<html>_EP-pSB1C3_EP, <nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html<html>_ES-<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html_XP-pSB1C3_EP)
*Luciferase assay
*Luciferase assay
*Asp diffusion assay
*Asp diffusion assay
Line 1,160: Line 1,160:
==='11/09/21(Wed)===
==='11/09/21(Wed)===
*Making plates
*Making plates
-
*Gel extraction(<nowiki>#</nowiki>20_SP, <nowiki>#</nowiki>29_EP, <nowiki>#</nowiki>3-29-5_EP, <nowiki>#</nowiki>20-3-29-5_EP)
+
<html>*Gel extraction(<nowiki>#</nowiki><span class="part_num">20</span></html<html>_SP, <nowiki>#</nowiki><span class="part_num">29</span></html<html>_EP, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html<html>_EP, <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html_EP)
*Ligation
*Ligation
-
**<nowiki>#</nowiki>20_SP-<nowiki>#</nowiki>3-27-5_XP, <nowiki>#</nowiki>24_SP-<nowiki>#</nowiki>3-14-5-2-3-17-5_XP, <nowiki>#</nowiki>29_EP-pSB1C3_EP, <nowiki>#</nowiki>3-29-5_EP-pSB1C3_EP, <nowiki>#</nowiki>20-3-29-5_EP-pSB1C3_EP, <nowiki>#</nowiki>3-14-5-2-3-17-5_EP-pSB1C3_EP
+
<html>**<nowiki>#</nowiki><span class="part_num">20</span></html<html>_SP-<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-<span class="part_num">5</span></html<html>_XP, <nowiki>#</nowiki><span class="part_num">24</span></html<html>_SP-<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>_XP, <nowiki>#</nowiki><span class="part_num">29</span></html<html>_EP-pSB1C3_EP, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html<html>_EP-pSB1C3_EP, <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html<html>_EP-pSB1C3_EP, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html_EP-pSB1C3_EP
*Transformation
*Transformation
-
**<nowiki>#</nowiki>36 from BioBrick? part
+
<html>**<nowiki>#</nowiki><span class="part_num">36</span></html from BioBrick? part
-
**<nowiki>#</nowiki>33-3-14-5-2-3-17-5 into BL21 comp.
+
<html>**<nowiki>#</nowiki><span class="part_num">33</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html into BL21 comp.
-
*Digest(<nowiki>#</nowiki>3-14-5-2-3-17-5_SP, <nowiki>#</nowiki>3-14-5-2-3-17-5_ES, <nowiki>#</nowiki>3-29-5_ES)
+
<html>*Digest(<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>_SP, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>_ES, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html_ES)
-
*Luciferase Assay(<nowiki>#</nowiki>36-3-14-5-2-3-17-5)
+
<html>*Luciferase Assay(<nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html)
*Cell diffusion assay
*Cell diffusion assay
<html></div></html>
<html></div></html>
Line 1,174: Line 1,174:
==='11/09/22(Thu)===
==='11/09/22(Thu)===
*Ligation (retry)
*Ligation (retry)
-
**#3-27-5_XP-#20_SP, #3-14-5-2-3-17-5-#24_SP, #29_EP-pSB1C3_EP, #3-29-5_EP-pSB1C3_EP, #20-3-29-5_EP-pSB1C3_EP, #3-14-5-2-3-17-5_EP-pSB1C3_EP
+
<html>**<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-<span class="part_num">5</span></html<html>_XP-<nowiki>#</nowiki><span class="part_num">20</span></html<html>_SP, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span>-</html<html><nowiki>#</nowiki><span class="part_num">24</span></html<html>_SP, <nowiki>#</nowiki><span class="part_num">29</span></html<html>_EP-pSB1C3_EP, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html<html>_EP-pSB1C3_EP, <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html<html>_EP-pSB1C3_EP, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html_EP-pSB1C3_EP
-
*Colony PCR(#36(->culture for mini prep), #33-3-14-5-2-3-17-5(->Maybe the amplification was failed))
+
<html>*Colony PCR(<nowiki>#</nowiki><span class="part_num">36</span></html<html>(->culture for mini prep), <nowiki>#</nowiki><span class="part_num">33</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html(->Maybe the amplification was failed))
-
*Gel extraction(#3-14-5-2-3-17-5_SP, _ES; #3-29-5_ES)
+
<html>*Gel extraction(<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>_SP, _ES; <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html_ES)
*Making plates
*Making plates
**M9 0.25% Agar. +IPTG +Amp.: 20
**M9 0.25% Agar. +IPTG +Amp.: 20
**LB Cm.: 20
**LB Cm.: 20
*Ligation
*Ligation
-
**#3-14-5-2-3-17-5_SP-#20-3-37-5_XP,
+
<html>**<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>_SP-<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html_XP,
-
**#3-14-5-2-3-17-5_ES-#20-3-37-5_XP-pSB1C3,
+
<html>**<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>_ES-<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html_XP-pSB1C3,
-
**#3-29-5_ES-#20-3-37-5_XP-pSB1C3_EP
+
<html>**<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html<html>_ES-<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html_XP-pSB1C3_EP
<html></div></html>
<html></div></html>
Line 1,200: Line 1,200:
<html><div class="labDay"></html>
<html><div class="labDay"></html>
==='11/09/26(Mon)===
==='11/09/26(Mon)===
-
*Ligation(#20-#3-27-5, #24-#3-14-5-2-3-17-5, recNp-3-14-5-2-3-17-5)
+
<html>*Ligation(<nowiki>#</nowiki><span class="part_num">20</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">24</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html, recNp-3-14-5-2-3-17-5)
*Digest(pSB1C3_ES)
*Digest(pSB1C3_ES)
-
*Miniprep(#3-29-5-pSB1C3, #20-3-29-5-pSB1C3, #36)
+
<html>*Miniprep(<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span>-</html<html>pSB1C3, <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span>-</html<html>pSB1C3, <nowiki>#</nowiki><span class="part_num">36</span></html)
-
*PCR amplification(pSB1A3, #3-29-5)
+
<html>*PCR amplification(pSB1A3, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html)
-
*Ethanol precipitation(#3-29-5-pSB1C3, #20-3-29-5-pSB1C3)
+
<html>*Ethanol precipitation(<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span>-</html<html>pSB1C3, <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span>-</htmlpSB1C3)
<html></div></html>
<html></div></html>
Line 1,283: Line 1,283:
   // part description popup
   // part description popup
 +
  /*
   $('div#labnote *').each(function() {
   $('div#labnote *').each(function() {
     var $t = $(this);
     var $t = $(this);
Line 1,296: Line 1,297:
     $t.html(txt);
     $t.html(txt);
   });
   });
 +
  */
   var description = {};
   var description = {};
   $('#partslist tr td:first-child').each(function() {
   $('#partslist tr td:first-child').each(function() {

Revision as of 17:13, 2 October 2011

Parts List

Each part is represented by s number (e.g. #20 for lac promotor) in this notebook. We have also used this number in our hand-written lab notebook. By pointing the mouse on the number in the construct, you can find out the details of the part.


Table 1. List of iGEM parts used in our project
Number Reg.ID Content Plasmid Length (bp)
#1 J23119 c.Promoter (Strong) pSB1A2 35
#2 J23118 c.Promoter (Medium) BBa_J61002 35
#3 B0032 RBS pSB1A2 13
#5 B0014 d.Ter pSB1AK3 95
#9 E0240 RBS-GFP-d.Ter pSB1A2 876
#10 E0040 GFP pSB1A2 681
#11 E1010 RFP pSB2K3 723
#14 I712019 fLuc pSB1AK8 1653
#17 J52008 rLuc pSB1AK3 936
#20 R0011 lacP pSB1A2 55
#21 C0012 LacI pSB1A2 1128
#22 I712074 pT7 pSB1AK8 46
#23 K145001 T7 RNA Pol. pSB1A2 2655
#24 J22106 recAp pSB1A2 192
#27 C0083 AspA pSB2K3 1518
#28 K112808 T4 phage lysis device (no promoter) pSB1A2 1785
#29 - CheZ pSB1AK3 728
#30 K117000 Lysis gene pSB1A2 144
#31 - LexA pSB1AK3 750
#33 - sulAp pSB1AK3 67
#34 - uvrAp pSB1AK3 96
#35 - recNp
#36 R0051 cI-repressed promoter pSB1A2 49
#37 C0051 cI repressor (LVA tagged) pSB1A2 \
#38 - RecA

Lab Diary

  • May
  • June
  • July
  • August
  • September
  • October

Please enable Javascript to view this calendar.

May

'11/05/18 (Wed)

  • Making LB medium, 50×TAE, Tris-HCl (pH8.0)

'11/05/24 (Tue)

  • Making SOB medium, 0.5M EDTA (pH8.0)

'11/05/25(Wed)

  • Making TB(pH=6.7), LB plate

'11/05/26(Thu)

  • Making Mgaq(for SOB medium), Competent cell
  • TB filtration

'11/05/31(Tue)

  • iGEM parts resuspension + frozen stock (at -20℃)
  • Transformation
  • Overnight culture on LB plate (with 100ug/ml ampicilline)

June

'11/06/01(Wed)

  • Picking up colony and transfer to LB medium
  • Making LB medium

'11/06/02(Thu)

  • Miniprep
  • Making Glycerol(50%)(for cryopreservation)

'11/06/07(Tue)

  • Nanodrop
  • Transformation
  • Culture from frozen stock

'11/06/08(Wed)

  • Picking up colony

'11/06/09(Thu)

  • Miniprep

'11/06/13(Mon)

  • Planting Negative control
  • Making frozen stock

*Transformation(BBa_E0240, #3, B0015, #5, #10

'11/06/14(Tue)

  • Picking up colony
  • Making Mg reagent

'11/06/15(Wed)

  • Miniprep

'11/06/17(Fri)

*Picking up colony(#3, B0015, B0040,#9*Miniprep(#5*Dissolution(#1, #2, K16500, #24

'11/06/21(Tue)

*Making frozen stock(#3, B0015, B0040, #9*Passafe culture(#9

'11/06/22(Wed)

*Miniprep(#9

'11/06/24(Fri)

  • Digest (product of Miniprep 06/09 EScut)
  • Making agarose gel
  • Electrophoresis

'11/06/28(Tue)

  • Digest(product of Miniprep 06/09 EPcut)
  • Electrophoresis

*Defrost and transformation(BBa_E0030, E0020, #14, I712052,#17

'11/06/29(Wed)

  • Picking up colony
  • Making LB broth

July

'11/07/01(Fri)

  • Digest(EPcut)

*Miniprep(BBa_E0030, E0020, #14, I712052, #17

'11/07/05(Tue)

  • Electrophoresis(product of digest 07/01)

*Digest(#9, #14, #17, #3, #5

'11/07/06(Wed)

  • Gel extraction (pre)(BBa_I712052)

*Picking up colony(Ba_J23119, #2, #24, #10

'11/07/07(Thu)

*Digest(BBa_E0240, #14, #17, #3, #5*Defrost(BBa_E1010, K325101, #20, #21, #22, #23*Transformation(BBa_K145001, #20, #21, #22

'11/07/08(Fri)

*Miniprep(BBa_J23119, #2, #10, #24

'11/07/11(Mon)

*Gel extraction(#9 #14, #17*Transformation(#1, #11, #20, #21, K325101, #22, #23

'11/07/12(Tue)

  • Picking up colony

'11/07/13(Wed)

*Frozen stock(#1(18A), #20(6G), #21(2O), #14(6N), #23*Picking up colony(#11*Gel extraction(B#3, #5*Digest (#2

'11/07/14(Thu)

*Miniprep(#1, #11, #20, #21, #22, #23*Electrophoresis(#2*Gel extraction(#2, #3, #5*Passafe(#11

'11/07/15(Fri)

*Ligation(#2-#9, #2-#3, #14-#5, #17-#5*Transformation(#2-#9, #2-#3, #14-#5, #17-#5*Frozen stock(#11

'11/07/19(Tue)

  • Digest
  • Gel extraction
  • Making competent cell

'11/07/20(Wed)

  • Picking up colony
  • Making Master plate
  • Testing product of Miniprep

*Transformation (#2, #27, #28

'11/07/21(Thu)

*Miniprep(#2-3, #2-9, #14-5, #17-5, #11, #20**SPcut : #20, #2-3**XPcut : #10, #11, #14-5, #17-5

'11/07/22(Fri)

*Frozen stock(#2, #2-3, #2-9, #14-5, #17-5*Electrophoresis(#20_SP, #2-3_SP, #10_XP, #11_XP, #14-5_XP, #17-5**SPcut : #20**XPcut : #10, #11, #14-5, #17-5*Transformation(#27, #28

'11/07/25(Mon)

*Colony check(#2, #2-9*Gel Extraction(#20_SP, #10_XP, #11_XP, #14-5_XP, #17-5*Ligation and Transformation(#20-#9, #3-#11, #3-#14-5, #3-#17-5

'11/07/26(Tue)

*Picking up colony and making master plate(#20-9, #3-11, #3-14-5, #3-17-5*Colony PCR(#20-9, #3-11, #3-14-5, #3-17-5*Digest(#14-5 XPcut,Ecut, #22 SPcut, #23*Ligation(#3-#14-5(Re), #3*Transformation(#15, #27, #28, #30, #3-14-5(Re), #3

'11/07/27(Wed)

*Miniprep(#1, #2, #3, #10, #22, #24, #20-9, #3-11, #3-17-5

'11/07/28(Thu)

*Gel extraction(#14-5_XP, #22_SP, #23**SPcut : #1,#2, #3, #24**EScut : #3-11**XPcut : #3-17-5*Ligation(#3-#14-5

'11/07/29(Fri)

  • Cloning(lexA, cheZ)

*Colony PCR(#3-#14-5*Gel extraction(#1_SP, #2_SP, #3_SP, #24_SP, #3-11_ES, #3-17-5*Miniprep(#30

August

'11/08/01(Mon)

*Nanodrop(#3-11(1), #1, #3, #24, #2, #3-17-5(4)M#30*Digest(#3 SPcut, #5 EXcut, #9 XPcut, #30*Gel extraction(#3, #9, #30*Ligation(#2-#3-17-5, #3-11-#5, #14-#5, #3-#23, #22-#9, #3-#30*Transformation(#2-#3-17-5, #3-11-#5, #14-#5, #3-#23, #22-#9, #3-#30, #27(IPTG), #28

'11/08/02(Tue)

*Colony PCR(#2-#3-17-5, #3-11-#5, #14-#5, #3-#23, #22-#9*Cloning(PCR)(#27, #28*PCR_2nd(lexA, cheZ, #27, #28*Digest (#30

'11/08/04(Thu)

*Electrophoresis(product of ligation #2-3-17-5(2), #3-11-5(1,2), #14-5(2), #22-9*Frozen stock(#2-3-17-5(2), #3-11-5(1,2), #14-5(2), #22-9*Digest(#23*IPTG induct(#20-9

'11/08/05(Fri)

*Digest(#14-5(2) XPcut, #3-11-5*Cloning(PCR)(#27, #28

'11/08/08(Mon)

*Defrost Frozen stock, Miniprep, Nanodrop and Electrophoresis(#5, #20, #23, #30**XPcut : #27, #28, cheZ, lexA, #3-11-5(1), #23,#30**EScut : #6**EXcut : #7**SPcut : #7,#20*Defrost Frozen stock(#5, #14-5(2), #3-11-5

'11/08/09(Tue)

*Miniprep, Electrophoresis and Digest(#5, #14-5(2), #3-11-5*Gel extraction and Nanodrop(#6, #27, #8, cheZ, lexA③, #3-11-5(1), #23, #7_EX, #20, #7*Ligation(#27-psB1A2, #3-27, #20-28, #28-psB1A2, #3-29, #29-psB1A2, #31-psB1A2, #3-#23, #1-#3-11-5(1), #2-#3-11-5(1), #24-#3-11-5(1), #3-#30

'11/08/10(Wed)

*Colony PCR(#27-pSB1A2, #3-27, #20-28, #28-psB1A2, #3-29, #29-psB1A2, #31-pSB1A2, #3-#23, #1-#3-11-5(1), #2-#3-11-5(1), #24-#3-11-5(1), #3-#30**EScut : #6**EXcut : #7**SPcut : #1, #2, #3, #7, #20**XPcut : #23

'11/08/11(Thu)

*Gel extraction(#30, #14-5(insert,vector), #5, #3-11-5*Miniprep(#3, #20-28, #31, #24-3-11-5, #3-30

'11/08/12(Fri)

*Colony PCR(#3-14-5(2), #6-5, #3-23**8/11 PCR product:#27, #28**Miniprep product:#3-14-5(2), #5*Digest(#5 EXcut, #14**8/11 digest product : #5, #14-5, #3-30**8/11 PCR product : #27, #28*Colony PCR (re) (#13-14-5*Miniprep(ligation product : #6-5, #3-23**XPcut:#27, #28, #6-5**EScut: sulAp, uvrAp, #3-23

'11/08/15(Mon)

*Gel extraction(from previous digest products(8/12) : #27, #28, #33, #34, #4, #3-23**EScut: #3-11-5*Gel extraction(from digest products XPcut: cheZ, uvrBp(PCR products) EScut: #3-11-5*Ligation(#3-#14-5, #24-#3-17-5, #24-#3-11-5, #20-#28, #3-#27, #3-#29, #3-23-#5, #33-pSB1AK3, #34--pSB1AK3, #35--*Transformation(ligation products:WT, #2-9:cheZ-, #14, #17 37 incubation

'11/08/16(Tue)

*Colony PCR(#3-#14-5, #24-#3-17-5, #20-#28, #3-#27, #3-#29, #3-23-#5*Culture (#20-#28, #5, #14, #17, #2-9, #2-4, #2-3-17-5, #1, #2*Incubation (#24-#3-11-5, #33-pSB1AK3, #34-pSB1AK3, #35-*Digest(SPcut: #3, Ecut:#3*Ligation retry(#3-#14-5, #3-#27, #3-#29, Negative control :#3*Frozen stock(#14, #17*Culture test(#14*Miniprep(Ligation products : #2-3-17-5, #14, #17, #1, #2*Waking from frozen stock(#3

'11/08/17(Wed)

  • Hotstart-PCR (Change conditions a little)
    • From Genome
    • From nested-region
    • From parts
  • Making Competent Cell, SOB medium
  • Ethanol precipitation(WT: 40ng/ul)

*Culture from master-plate(#6-5, #20-28, #3-27, #33, #24-3-11-5 #24-3-17-5 Miniprep *Assay(IPTG induced cell lysis device *Gel extraction(SPcut:#3*Culture from Frozen stock(#1, #2, #2-3-17-5*Miniprep(#3, #6-5, #20-28, #3-27, #33, #24-3-11-5 #24-3-17-5

'11/08/18(Thu)

*Digest(8/17#3, #33 SPcut, #14-5 XPcut, #33 Ecut, #3-27,#3-30,#20-28*Culture from 0809 master-plate ⑪ (#2-3-11-5*Gel extraction(8/17#3_SP,#33_SP, #14-5_XP, #33_E, #3-27*Miniprep(#1, #2, #2-3-11-5, #2-3-17-5*Digest(#1,#2 SPcut, #2-3-17-5 XPcut, #2-3-11-5 SPcut(check), EPcut(selection), #3-30, #20-28*Ligation (8/17#3-#14-5, 8/17#3-8/15#29, #33-#3-11-5, 8/15#34-pSB1AK3, #3-27-#5, #20-28-pSB1AK3, #28-

'11/08/19(Fri)

*ColonyPCR(from ligation products)(#3-14-5, #3-29, #33-3-11-5, #34-pSB1AK3, #3-27-5*Gel extraction(08/18's digest products:#1_SP, #2_SP, #2-3-11-5_SP, #2-3-17-5_XP, cheZ_XP, #2-3-11-5*Colony PCR retry(#3-29, #34-*Electrophoresis(#3, #3-27, #3-30, #6-5, #7, #20-28, #24-3-11-5, #24-3-17-5, #33

'11/08/22(Mon)

  • Making SOB medium
  • Culture for Miniprep

**From frozen stock(#1, #2, #7, #2-3-17-5(2), #3-30**From master plate(#3-14-5, #33-3-11-5, #34-pSB1AK3, #3-27-5**From frozen stock(#1, #2, #2-3-17-5(2), #3-30) #7**From ligation products(#7, #3-14-5, #3-27-5, #34, #33-3-11-5**From Frozen Stock (#7_EX, #30_XP, #2-3-17-5_XP, #3-30**From Master plate(#3-14-5_XP, #34-pSB1AK3_SP, #3-27-5*Sulvage #33**From Master plate(#24-3-17-5, #14-5

'11/08/23(Tue)

  • Gel extraction

**from O.N. digest products(#7_EX, #30_XP, #2-3-17-5_XP, #3-30_ES, #3-14-5_XP, #34-pSB1AK3_SP, #3-27-5**From O.N. culture in eppendolf tube 700ul(#24-3-17-5, #14-5**From O.N. culture(for Miniprep)(#34, #3-27-5, #33-3-11-5**retry from master plate #3-14-5(278.1 ng/ul), #33-3-11-5(188.9ng/ul), #34-pSB1AK3(89.6ng/ul), #3-27-5*Digest (#14-5 XPcut, #3-27-5 Xcut, Pcut (check), #3-27-5*Ligation (#14-#5, #3-30-#5, #3-#30, #34-#3-11-5 #20-#28*#33

'11/08/24(Wed)

*Gel extraction & Electrophoresis(#3-27-5_ES, #14-5_XP, #3-27-5 PCR clean-up system -> digest **#27 XP cut **#28 XP cut *Making plate and amp stock ->4℃ **amp 32 **km 11 (km conc. = 3/4 * that it was) *Miniprep and Nanodrop **#33transfromation *Luciferase assay reagents prep **D-Luciferin Solution : 1ml*10 + 100ul*10 at -80℃ **Coelenterazine Solution : 100ul * 10 at -20℃ **Lysis buffer : 500ul * 10 at -20℃ *Ligation(#3-30-#5, #3-11-5-#34, #30-#3, #28-#20, #35-pSB1AK3, #2-3-11-5-pSB1K3, #14-5-#3

'11/08/25(Thu)

*Renilla luciferase assay (with #2-3-17-5*Gel extraction (#27, #28*Ligation (0824 retry & #20-#28, #3-#27*Transformation (Ligation products into WT competent cells & #14-5 miniprep product into WT cell (line-drawing spread), #33*Digest (#14*Passage(#2-3-17-5

'11/08/26(Fri)

*Renilla luciferase assay (with #2-3-17-5*Colony PCR (#33*Gel extraction (#14*Digest (#5*Passage in a shaker(#2-3-17-5

'11/08/27(Sat)

  • Ligation & Transformation (0826 ①②③⑤⑧⑨) (into Nippon Gene comp.)
  • Contamination check (WT FS, ΔcheZ Frozen stock)
  • Waking from Frozen stock(WT, ΔcheZ)

'11/08/28(Sun)

  • Making ΔcheZ comp., LB amp plates, TB
  • Colony PCR & master plate preparation -> Failure!!

*Gel extraction (#29_XP, #5*Miniprep and frozen stocks (#33, #14-5*Digest (#20 SPcut, #14-5*Waking from frozen stock (WT, ⊿cheZ, #20, #14-5

'11/08/29(Mon)

*PCR purification -> digest with XP(#27, #28*Miniprep(#20, #14-5*Gel extraction(#14-5, #20*Ligation (higher I/V ratio, into cheZ comp.)(#3-#14-5(retry), #2-3-11-5 to pSB1K3 (retry), #35-pSB1AK3, (#33,#34)-#3-17-5

'11/08/30(Tue)

  • Making LB amp, Aspartic acid solution (10mM), H2O2 solution (10mM)

*Gel extraction -> PCR was failed!(#27,#28*Colony PCR(#3-#14-5, #2-3-11-5 to pSB1K3, #35-pSB1AK3, (#33,#34)-#3-17-5*PCR -> check (5uL EP -> PCR clean-up(#27,#28*Digest(#20_SP, pSB1AK3_EP, #3*EP for MP check(#14-5, #20*Ligation(#3-#29, pSB1AK3-#2-3-11-5 on Amp/Km plate, #3*Transformation(#2-9 Line-drawing plating *SOS stress (UV irradiation or H2O2)(#24-3-11-5, #33-3-11-5*culture for Miniprep from master plate(#34-3-17-5*Waking from frozen stock(#24-3-11-5, #33-3-11-5

'11/08/31(Wed)

  • Making LB plates(amp, km)
  • Luciferin reagent preparation
  • Flask A.C. for making competent cells

*Miniprep (#34-3-17-5*Gel extraction(#20_SP, pSB1AK3_EP, #3*PCR -> clean-up -> XPcut(#27, #28, #14-5, #3-30*Waking from frozen stock(#2-9 (WT), #24-3-17-5*Plating from liquid culture(#2-3-17-5*Ligation(#20-#3-17-5, #2-3-11-5-pSB1AK3, #3-#14, #20-#28, #3-#27, #3-#29, #35-pSB1AK3, #3-#14-5, #3-30-#5, #33-#3-17-5**Plasmid isolation(#34-3-17-5**Part cloning(#36, #37**Titer check(#3-17-5(Takara comp.,1:9gradient), #2-3-11-5(ΔcheZ comp.0802, 1:9gradient), #2-3-11-5

September

'11/09/01(Thu)

  • Colony PCR

**#34-3-17-5(MP), #3-14, #3-29, #35-pSB1AK3, #3-14-5, #37**#27_XP ,#28_XP(0830); #27_XP, #28_XP, #3-30_XP -> failed!, #14-5*Miniprep(#3, #20**#3-14, #3-29, #3-14-5**#3 -> Failed (Mixed with DMSO!), #20**#3-14, #3-29, #3-14-5**#3-27, #20-#3-17-5**#36**Titer check(MP product #3 into 0901 WT comp., MP product #20*Mobility assay(#14-5

'11/09/02(Fri)

  • Making medium and reagent(LB 120ml(0.125, 0.25, 0.5% Agar, M9 stock(20×), M9 200ml, Vitamins Solution (100×))
  • Gel extraction -> Digest products were OK but extraction was failed.

**#20_SP, #3-14_XP, #3-14-5_XP, #3-29*Colony PCR & Master plate(#20-3-17-5, #3-27*Miniprep(#3, #20, #37, #3-14, #3-29, #3-14-5, #20-3-17-5, #3-27 PCR products were OK but all purified products were lost. **#20-3-17-5, #3-27**#3-14, #3-14-5, #3-29**#20-3-17-5, #3-27, #3-14-5, #3-29**#3_SP, #20_SP, #37_ES, #3-14_ES, #3-29_ES, #3-14-5**#20-3-17-5_XP, #3-27_ES, #3-14-5_XP, #3-29

'11/09/03(Sat)

  • Gel extraction
  • Ligation & Transformation

**#20-#3-14-5, #2-#3-14-5, #3-27-#5**#3-27-#5, #37-#5*Part Cloning (#36

'11/09/04(Sun)

  • Hot-start PCR Pre-Mix (4×) preparation (Buffer + dNTPs + THUNDER Taq)

*Colony PCR(#20-3-14-5, #3-27-5, #3-29-5, #37-5**#2-#3-14-5, #3-27-#5, #3-29-#5, #37-#5, #20-#28**#36**#2, #5*Culture for Miniprep(#20-3-14-5, #20*Digest(#20

'11/09/05(Mon)

*Colony Diffusion Assays (#2-9*Gel extraction(#20**Dual Luciferase Assay(#20-3-14-5, #20-3-17-5*Colony PCR(#2-#3-14-5, #3-27-#5, #3-29-#5, #37-#5, #20-#28, #36*PCR -> clean-up -> Digest(#3-29-#5, #37-5*Miniprep(#20-3-14-5, #37-5, #36 Asp -> all failed(.125%, .25% Agar) *Culture for Miniprep(#2-3-14-5

'11/09/06(Tue)

*Gel extraction(#37-5, #3-29-5*Miniprep(#2-3-14-5, #20-3-14-5, #20-3-17-5, #36, #3-29-5, #37-5*PCR (retry) (Hot-start & Normal PCR) -> Purification -> Digest(#3-29-5_XP, #37-5**#3-27-#5, #3-30-#5, #2-3-11-5-**#5*Culture for GFP live-imaging (#2-9 4℃ storage *Ninhydrin sol. preparation (Not dissolvable!) -> 4℃ storage

'11/09/07(Wed)

*Colony PCR(#3-27-5, #3-30-5*Digest(#36*Culture from master plate(#36, #3-29-5, #37-5*Miniprep(#36, #3-29-5, #37-5, #3-27-5*Gel extraction(#3-29-5_XP, #37-5_ES, pSB1AK3_EP, #36*PCR amplification -> Digest(#3-14-5, #3-29-5, #37-5, #3-27-5*Digest(#36_SP (re), #2_SP, #2-3-17-5_EX, #3-14-5_ES, #34*Culture for Miniprep(#2, #34, #36, #3-27-5, #3-14-5, #2-3-17-5**#33-#3-14-5, #34-#3-14-5, #36-#3-14-5, #2-#3-29-5, #20-#3-29-5, #3-#37-5, #2-3-11-5-pSB1AK3, #1-#3-17-5**#33, #34, #36, #1, #2, #20, #3

'11/09/08(Thu)

  • Making competent cell (WT), LB(amp) plate

*Frozen stocks(#36, #3-14-5, #3-27-5*Colony PCR(#33-3-14-5, #34-3-14-5, #36-3-14-5, #20-3-29-5, #2-3-11-5*Miniprep(#2, #34, #36, #2-3-17-5, #3-27-5, #3-14-5**PCR product: #35_SP, #31_XP, #3-14-5_XP, #3-27-5_XP, #3-29-5_XP, #37-5**Miniprep product: #2_SP, #34_SP, #36_SP, #2-3-17-5_EX, #3-14-5*PCR amplification(#34-3-14-5, #36-3-14-5, #20-3-29-5, #20-3-14-5*PCR for Sequencing -> Store at -20C(#33-3-11-5, #34-3-14-5, #20-3-29-5, #37-5*Ligation(#35_ES-psB1AK3_ES, #31_XP-psB1A2_XP, #31_XP-psB1AK3_XP, #3-#37-5, #36-3-29-5, #3-14-5_ES-#2-3-17-5_EX, #20-#3-27-5*Culture for Miniprep(#34-3-17-5, #36-3-14-5, #20-3-29-5, #2-3-11-5**PCR products: #34-3-14-5_ES, #36-3-14-5_ES, #20-3-14-5

'11/09/09(Fri)

  • Making competent cell (WT), TB

*Colony PCR(#35-pSB1AK3 (failed), #31-pSB1AK3, #3-#37-5, #36-#3-29-5, #3-14-5-#2-3-17-5, #20-3-27-5**From Miniprep : #3-14-5, #3-17-5**From Colony PCR : #31, #3-37-5, #36-3-29-5, #3-14-5-2-3-17-5**Miniprep product: #3-11-5**PCR-purified product: #3-14-5_EP, #3-17-5_EP, #31_EP, #3-37-5_XP, #36-3-29-5*Miniprep(#34-3-14-5, #36-3-14-5, #20-3-29-5, #2-3-11-5*Gel extraction(#34-3-14-5_ES, #36-3-14-5_ES, #20-3-14-5_ES, #3-11-5**#3-11-5_EP-pSB1C3_EP, #29**#36-3-14-5_ES-#2-3-17-5_EX, #20_SP-#3-27-5**#2-3-11-5**#20-3-29-5**#20-3-29-5*Culture for Miniprep(#31-pSB1AK3, #3-37-5, #36-3-29-5, #3-14-5-2-3-17-5*UV irradiation -> Luciferase Assay(#24-3-17-5, #34-3-17-5*CleanSEQ -> Sequencing(#33-3-11-5, #34-3-14-5, #20-3-29-5, #37-5

'11/09/10(Sat)

  • Culture plate storage (4℃)

*Miniprep(#31-pSB1AK3, #3-37-5, #36-3-29-5, #3-14-5-2-3-17-5*Gel extraction(#3-14-5_EP, #3-17-5_EP, #31_EP, #3-37-5_XP, #36-3-29-5*Colony PCR(#36-3-14-5-#2-3-17-5*Ligation(#20_SP-#3-37-5

'11/09/11(Sun)

  • Digest from Miniprep products

**#3-14-5-2-3-17-5**#36-3-14-5_SP, #20 O.N. *Colony PCR **#3-11-5 (pSB1C3), #29**#20-#3-27-5(failed), #20-#3-37-5, #36-#3-14-5-2-3-17-5*Gel extraction(#3-14-5-2-3-17-5**From Master plate : #20-3-37-5, #29**From plate stock : #20**From frozen stock : #2-3-17-5*Miniprep( #36-3-14-5-2-3-17-5*Ligation(#20_SP-#3-14-5-2-3-17-5_XP, #1_SP-#3-14-5-2-3-17-5**i.PCR amplification -> Digest for >1h -> Heat kill for 20min (#20-3-37-5_XP, #36-3-14-5-2-3-17-5**ii.Digest for >1h -> Heat kill for 20min (#36-3-14-5-2-3-17-5_SP, pSB1A3_EP, #2-3-17-5**iii.Ligation for 30min (#20-3-14-5_ES-#2-3-17-5_EX, #36-3-14-5-2-3-17-5_SP-#20-3-37-5_XP, #36-3-14-5-2-3-17-5_ES-#20-3-37-5**#20-3-29-5**#20-3-29-5

'11/9/12 (Mon)

  • Colony PCR

**#20-#3-14-5-2-3-17-5**#20-3-14-5-#2-3-17-5**#1-#3-14-5-2-3-17-5**#36-3-14-5-2-3-17-5-#20-3-37-5**#36-3-14-5-2-3-17-5-#20-3-37-5-Note: #20-3-37-5 colonies on the master-plate are RED. Maybe #2-3-11-5 Note: #36-3-14-5-2-3-17-5-#20-3-37-5-**From master plate : #20-3-37-5**From 09/11 Miniprep product : #36-3-14-5-2-3-17-5Note: Only one #20-3-37-5*Miniprep(#20, #29 (pSB1AK3), #2-3-17-5, #2-3-37-5**From PCR : #36-3-14-5-2-3-17-5_ES, #20-3-37-5**From Miniprep : #20-3-37-5**J04450_EP, *#2-9_XP, #20-3-29-5**#20_SP, #36-3-14-5**From OverNight digests : #2-3-17-5**#36-3-14-5-2-3-17-5**From today's PCR digests : #20-3-37-5*Culture for Miniprep(#20-3-37-5*Dual Luciferase Assay(#20-3-14-5-2-3-17-5, #1-3-14-5-2-3-17-5, #36-3-14-5-2-3-17-5-20-3-37-5-**#36-3-14-5-2-3-17-5_ES-#20-3-37-5**#36-3-14-5-2-3-17-5_ES-#20-3-37-5**#3-27-5_XP-#20**#36-3-29-5_ES-#20-3-37-5

'11/9/13 (Tue)

  • Colony PCR

**#36-3-14-5-2-3-17-5_ES-#20-3-37-5**#36-3-14-5-2-3-17-5_ES-#20-3-37-5**#3-27-5_XP-#20**#36-3-29-5_ES-#20-3-37-5**#36-3-14-5-2-3-17-5-20-3-37-5**#20-3-14-5-2-3-17-5**#1-3-14-5-2-3-17-5 Note: Seemes OD600 should NOT exceed 0.4~0.5, or intracellular luciferase will be saturated. *Miniprep. **#20-3-14-5-2-3-17-5**#1-3-14-5-2-3-17-5**#20-3-37-5**#20-3-37-5**#20-3-29-5**#2-9Note: #20-3-29-5**#1-3-14-5-2-3-17-5**#20-3-14-5-2-3-17-5**#36-3-14-5-2-3-17-5-20-3-37-5 (#2-3-11-5**#20-3-37-5**#20-3-29-5**#3-27-5**#31**#20**#3-29-5**#20_SP-#3-27-5**#3-14-5-2-3-17-5**#1-3-14-5-2-3-17-5**#20-3-14-5-2-3-17-5**#20-3-37-5

'11/09/14(Wed)

  • Colony PCR

**#3-27-5_XP-#20**#20-3-14-5-2-3-17-5**#1-3-14-5-2-3-17-5**#3-14-5, #3-17-5, #3-14-5-2-3-17-5, #1-3-14-5-2-3-17-5, #20-3-14-5-2-3-17-5**#20**From plate stock : #20, #20-3-14-5-2-3-17-5, #3-14-5-2-3-17-5, #3-17-5**From 09/11 master plate : #3-11-5*Part cloning(#19**#20_SP-#3-29-5**#36-3-14-5-2-3-17-5_ES-#20-3-37-5**#1-3-14-5-2-3-17-5**#20-3-14-5-2-3-17-5**①F⑤R#20-3-37-5**②F⑥R#20-3-29-5 (#2-3-11-5**③F⑦R#3-27-5**④F⑧R#31

'11/09/15(Thu)

*Colony PCR(#19, #36-3-14-5-2-3-17-5-20-3-37-5 (failed), #20-3-29-5*Miniprep(#20, #20-3-14-5-2-3-17-5, #3-14-5-2-3-17-5, #3-17-5**#3-14-5(failed), #3-17-5, #3-14-5-2-3-17-5, #1-3-14-5-2-3-17-5, #20-3-14-5-2-3-17-5 (EPcut); #20*Culture for Miniprep(#3-11-5 (pSB1C3), #20-3-29-5, #19**sulAp(ES)-#3-14-5-2-3-17-5**recNp(ES)-#3-14-5-2-3-17-5**#36-3-14-5-2-3-17-5_ES-#20-3-37-5**#3-27-5_XP-#20**#3-17-5**#3-14-5**#3-14-5-2-3-17-5**#20-3-14-5-2-3-17-5*Culture for Dual Luciferase Assay(#20-3-14-5-2-3-17-5

'11/09/16(Fri)

  • Colony PCR

**sulAp(ES)-#3-14-5-2-3-17-5**recNp(ES)-#3-14-5-2-3-17-5**#36-3-14-5-2-3-17-5_ES-#20-3-37-5**#3-27-5_XP-#20**#3-17-5**#3-14-5**#3-14-5-2-3-17-5**#20-3-14-5-2-3-17-5**#36-3-14-5-2-3-17-5_ES-#20-3-37-5*Miniprep(#3-11-5 (pSB1C3), #20-3-29-5, #19*PCR amplification(#3-27-5, #36-3-14-5-2-3-17-5*Sequencing prep(#20-3-29-5*Digest(pSB1C3_ES, pSB1C3_EP, #3-27-5_XP, #36-3-14-5-2-3-17-5**#20-3-14-5-2-3-17-5

'11/09/17(Sat)

  • Colony PCR (retry)

**#3-14-5, #3-17-5**#36-3-14-5-2-3-17-5-20-3-37-5*Culture for Miniprep(#3-14-5, #3-17-5*Ligation(sulAp-pSB1C3, recNp-pSB1C3, #20-#3-27-5*Transformation(#20-3-29-5

'11/09/18(Sun)

*Colony PCR & Culture for Miniprep(#36-3-14-5-2-3-17-5-20-3-37-5, #33-3-14-5-2-3-17-5*Miniprep(#3-14-5, #3-17-5*Ligation(#20-#3-27-5, recNp-#3-14-5-2-3-17-5, sulAp-pSB1C3, recNp-pSB1C3, #31-

'11/09/19(Mon)

*Culture for Dual luciferase assay(#36-3-14-5-2-3-17-5-20-3-37-5, #33-3-14-5-2-3-17-5, #1-3-14-5-2-3-17-5, #20-3-14-5-2-3-17-5*Miniprep(#36-3-14-5-2-3-17-5-20-3-37-5, #33-3-14-5-2-3-17-5*Ligation(#24-#3-14-5-2-3-17-5, #20-#3-27-5*Sequencing(#36-3-14-5-2-3-17-5-20-3-37-5, #33-3-14-5-2-3-17-5, #20-3-29-5*Dual luciferase assay(#1~, #20~, #36~, #33

'11/09/20(Tue)

*colony PCR(20-3-27-5, #24-3-14-5-2-3-17-5*Gel extraction(#3-27-5*PCR amplification -> Digest(#29_EP, #20-3-29-5_EP, #3-29-5*Digest(#20**#3-11-5**#3-14-5**#3-17-5*Ligation(#31_EP-pSB1C3_EP, #36-3-29-5_ES-#20-3-37-5

'11/09/21(Wed)

  • Making plates

*Gel extraction(#20_SP, #29_EP, #3-29-5_EP, #20-3-29-5**#20_SP-#3-27-5_XP, #24_SP-#3-14-5-2-3-17-5_XP, #29_EP-pSB1C3_EP, #3-29-5_EP-pSB1C3_EP, #20-3-29-5_EP-pSB1C3_EP, #3-14-5-2-3-17-5**#36**#33-3-14-5-2-3-17-5*Digest(#3-14-5-2-3-17-5_SP, #3-14-5-2-3-17-5_ES, #3-29-5*Luciferase Assay(#36-3-14-5-2-3-17-5

'11/09/22(Thu)

  • Ligation (retry)

**#3-27-5_XP-#20_SP, #3-14-5-2-3-17-5-#24_SP, #29_EP-pSB1C3_EP, #3-29-5_EP-pSB1C3_EP, #20-3-29-5_EP-pSB1C3_EP, #3-14-5-2-3-17-5*Colony PCR(#36(->culture for mini prep), #33-3-14-5-2-3-17-5Maybe the amplification was failed)) *Gel extraction(#3-14-5-2-3-17-5_SP, _ES; #3-29-5**#3-14-5-2-3-17-5_SP-#20-3-37-5**#3-14-5-2-3-17-5_ES-#20-3-37-5**#3-29-5_ES-#20-3-37-5

'11/09/23(Fri)

  • colony PCR
  • Column purification
  • Ligation
  • PCR amplification
  • Competent cell(BL21(DE3))
  • Asp diffusion test
  • Cell diffusion assay
  • Asp chemotaxis assay

'11/09/26(Mon)

*Ligation(#20-#3-27-5, #24-#3-14-5-2-3-17-5*Miniprep(#3-29-5-pSB1C3, #20-3-29-5-pSB1C3, #36*PCR amplification(pSB1A3, #3-29-5*Ethanol precipitation(#3-29-5-pSB1C3, #20-3-29-5-