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Revision as of 03:37, 29 September 2011

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Week 14 Brainstorming Week 1 Week 2 Week 3 Week 4 Week 5 Week 6 Week 7 Week 8 Week 9 Week 10 Week 11 Week 12 Week 13 Week 14

Week 14:

09/13/2011
1. Check quality of gDNA
2. Make HT115 + BL21 (tetO, CRISPR-GFP #7) competent cells, freeze stock
3. Miniprep PCDF+casO
C. Plate 4 Well 16O (LovTAP Composite)
4. Digest tetO/tetR

09/15/2011
1. Run a gel of all minipreped PCDF+casO

2. PCR HT115, DH5α2, DH5α3 with primers

09/18/2011
1. Inoculate the following:
BL21 tetO::GFP
BL21 tetO::GFP, CRISPR::GFP#7
BL21 tetO::GFP, CRISPR::GFP#7, cas3
HT115 tetO::GFP
HT115 tetO::GFP, CRISPR::GFP#7
HT115 tetO::GFP, CRISPR::GFP#7, cas3
HT115 CRISPR::GFP #7

09/19/2011
1. Growth test, grow all the bacteria overnight

2. PCR cas3+casO from gDNA

09/20/2011
1. Make biobrick of cas3 and casO
2. Run a gel for cas3 and casO
3. Purify cas3 and casO
4. New experiment: dilution the bacteria to 1000 and 5000 cells and plate them

09/21/2011
1. Do growth test for the following:
BL21 tetO::GFP-IPTG
BL21 tetO::GFP+IPTG
BL21 tetO::GFP, CRISPR::GFP#7-IPTG
BL21 tetO::GFP, CRISPR::GFP#7+IPTG
BL21 tetO::GFP, CRISPR::GFP#7, cas3-IPTG
BL21 tetO::GFP, CRISPR::GFP#7, cas3+IPTG
BL21 tetO::GFP, CRISPR::GFP#7, cas3+IPTG an hour later
HT115 tetO::GFP-IPTG
HT115 tetO::GFP+IPTG
HT115 tetO::GFP+IPTG an hour later
HT115 tetO::GFP, CRISPR::GFP#7-IPTG
HT115 tetO::GFP, CRISPR::GFP#7+IPTG
HT115 tetO::GFP, CRISPR::GFP#7+IPTG an hour later
HT115 tetO::GFP, CRISPR::GFP#7, cas3-IPTG
HT115 tetO::GFP, CRISPR::GFP#7, cas3+IPTG
HT115 tetO::GFP, CRISPR::GFP#7, cas3+IPTG an hour later
HT115 CRISPR::GFP #7-IPTG
HT115 CRISPR::GFP #7+IPTG
HT115 CRISPR::GFP #7+IPTG an hour later
BL21 tetO::GFP, CRISPR::GFP#7, cas3
HT115 tetO::GFP
HT115 tetO::GFP, CRISPR::GFP#7
HT115 tetO::GFP, CRISPR::GFP#7, cas3
HT115 CRISPR::GFP #7
2. Dilution: plate on Amp #4 and #5 +/- IPTG, #4 and #5 have different OD values. Dilute 1000* and 5000* to both of them
3. Digest pSB1C3 and tetO/R vector
4. Transform casO#1, #2, #1, #2 on CM plates

09/22/2011
1. Inoculation casO and cas3 into 24 tubes Notes: casO#1 goes to 1-6, casO#2 goes to 7-12; cas3#1 goes to another 1-6, cas3#2 goes to another 7-12

09/23/2011
1. Mini-prep all the casO and cas3 samples
2. Digest them by different enzymes
3. Ligate them with pSB1C3 vectors

09/24/2011
1. Transform all the ligated products into competent cells
2. Inoculate them in LB media

09/25/2011
1. Mini-prep the biobrick products
2. Verify them by PCR

09/25/2011
1. Transform the casO plasmid into BL21; cas3; tetO::GFP; CRISPR-GFP
2. Inoculate the above plasmids

09/27/2011
1. Do growth test for the following BL21 cells:
BL21 tetO::GFP-IPTG
BL21 tetO::GFP+IPTG
BL21 tetO::GFP+IPTG(2 hours later)
BL21 tetO::GFP, CRISPR::GFP-IPTG
BL21 tetO::GFP, CRISPR::GFP+IPTG
BL21 tetO::GFP, CRISPR::GFP+IPTG(2 hours later)
BL21 tetO::GFP, CRISPR::GFP+cas3-IPTG
BL21 tetO::GFP, CRISPR::GFP+cas3+IPTG
BL21 tetO::GFP, CRISPR::GFP+cas3+IPTG(2 hours later)
BL21 tetO::GFP, CRISPR::GFP+cas3+casA-E-IPTG
BL21 tetO::GFP, CRISPR::GFP+cas3+casA-E+IPTG
BL21 tetO::GFP, CRISPR::GFP+cas3+casA-E+IPTG(2 hours later)
BL21 tetO::GFP, CRISPR::GFP+cas3+casA-2-IPTG
BL21 tetO::GFP, CRISPR::GFP+cas3+casA-2+IPTG
BL21 tetO::GFP, CRISPR::GFP+cas3+casA-2+IPTG(2 hours later)