Team:Arizona State/Project/Software

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Revision as of 03:49, 27 September 2011

CRISPR Studio

We have developed a tool to assist in the development of synthetic CRISPR systems.

Pick spacers from a source sequence, based on homology with the target genome, hairpinning potential, restriction sites, and known PAMs.
Output arrays with various formats based on generated spacers.
Display and gather CRISPR information using a database cultivated from several sources.

Downloads (coming soon)

Python source:

Dependencies: BioPython, NumPy, WxPython

Executable:

Sources

[http://crispr.u-psud.fr/crispr/ CrisprDB]
[http://cmr.jcvi.org/tigr-scripts/CMR/CmrHomePage.cgi JCVI CMR]
[http://crispi.genouest.org/ CRISPI]