Team:Sevilla/Software/Ubbit

From 2011.igem.org

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       <strong>Ubbit.org</strong>The ubbit repository is a web application developed by the computer science students of the team.  
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       <strong>Ubbit.org</strong>The ubbit repository is a web database  developed to make easy the implementation of the Ubbit standard. The main functionalities of the database are:      </p>
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<li>A modelling language based on P systems which allows modular and parsimonious multi-cellular model development including geometric information.
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<li>A multi-compartmental stochastic simulator based on Gillespie’s Stochastic Simulation Algorithm for multi-cellular systems.
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<li>Formal model analysis using the stochastic model checkers PRISM and MC2 for the study of temporal and spatial model properties.
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<li>Structural and parameter model optimisation using evolutionary algorithms to automatically generate models whose dynamics match specified targets.
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Revision as of 08:57, 20 September 2011

Ubbit repository



Ubbit.orgThe ubbit repository is a web database developed to make easy the implementation of the Ubbit standard. The main functionalities of the database are:

  • A modelling language based on P systems which allows modular and parsimonious multi-cellular model development including geometric information.
  • A multi-compartmental stochastic simulator based on Gillespie’s Stochastic Simulation Algorithm for multi-cellular systems.
  • Formal model analysis using the stochastic model checkers PRISM and MC2 for the study of temporal and spatial model properties.
  • Structural and parameter model optimisation using evolutionary algorithms to automatically generate models whose dynamics match specified targets.

The future of Ubbit.com



Ubbit.org


<forum_onpage> Team2011 > Sevilla > Ubbit </forum_onpage>