Team:Arizona State/Templates/cas table

From 2011.igem.org

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Revision as of 20:39, 10 August 2011

Name [62] Name [13] Name[23] I-A I-B I-C I-D I-E I-F II-A II-B III-A III-B I-U III-U U COG TIGR Ramp [62] cascade-like complex [62] putative function grouping [71]
cas_HTH
cas1 cas1 cas1 y y y y y y y y y y [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1518 1518] [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR00287 00287] Nuclease [72]
cas10 cmr2 y y [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1353 1353] [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR02577 02577] y Polymerase [72]
csm1 y y [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1353 1353] [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR02578 02578] y Polymerase [72]
csx11 y y [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1353 1353] y Polymerase [72]
cas10d csc3 y [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1353 1353] y
cas2 cas2 cas2 y y y y y y y y y y [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1343 1343], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG3512 3512] [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01573 01573]
cas3' cas3 cas3 y y y y y y [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1203 1203] [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01587 01587] Helicase, nuclease [13]
cas3 y y [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG2254 2254]
cas4 cas4 y y y y y [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1468 1468] [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR00372 00372] RecB exonuclease [72][73]
csa1 y y y y y [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1468 1468] [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01896 01896] RecB exonuclease [72][73]
cas5 cas5d casD y y y y [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1688 1688] [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01876 01876] y y N-terminal domain [13], crRNA processing [62] cas5
cas5e casD y y y y [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1688 1688] [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01868 01868] y y N-terminal domain [13], crRNA processing [62] cas5
cas5h casD y y y y [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1688 1688] [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR02592 02592] y y N-terminal domain [13], crRNA processing [62] cas5
cas5t casD y y y y [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1688 1688] [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01895 01895] y y N-terminal domain [13], crRNA processing [62] cas5
cmx5 casD y y y y [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1688 1688] y y N-terminal domain [13], crRNA processing [62] cas5
csa5a casD y y y y [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1688 1688] [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01874 01874] y y N-terminal domain [13], crRNA processing [62] cas5
csa5p casD y y y y [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1688 1688] y y N-terminal domain [13], crRNA processing [62] cas5
cas6 cas6 y y y y y [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1583 1583], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG5551 5551] [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01877 01877] y crRNA processing [62] cas6
cmx6 y y y y y [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1583 1583], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG5551 5551] y crRNA processing [62] cas6
cas6e cse3 casE y [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01907 01907] y crRNA processing [62] cas6
cas6f csy4 y [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR02563 02563] y crRNA processing [62] cas6
cas7 csa2 casC y y y y [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1857 1857], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG3649 3649] [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR02583 02583] y y Regulation [13] cas7
csd2 casC y y y y [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1857 1857], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG3649 3649] [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR02589 02589] y y Regulation [13] cas7
cse4 casC y y y y [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1857 1857], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG3649 3649] [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01869 01869] y y Regulation [13] cas7
csh2 casC y y y y [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1857 1857], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG3649 3649] [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR02590 02590] y y Regulation [13] cas7
csp1 casC y y y y [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1857 1857], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG3649 3649] y y Regulation [13] cas7
cst2 casC y y y y [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1857 1857], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG3649 3649] [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR02585 02585] y y Regulation [13] cas7
cas8a1 CXXC-CXXC y y
cmx1 y y
cst1 y [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01908 01908] y
csx13 y y
csx8 y y
cas8a2 csa4 y [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01914 01914] y
csx9 y y
cas8b TM1802 y y
csh1 y [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR02591 02591] y
cas8c csd1 y [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01863 01863] y
csp2 y y
cas9 csn1 y y [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG3513 3513] [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01865 01865] HNH endonuclease [13]
csx12 y y [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG3513 3513] HNH endonuclease [13]
cmr1 cmr1 y [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1367 1367] [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01894 01894] y y cas7
cmr3 cmr3 y [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1769 1769] [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01888 01888] y y cas5
cmr4 cmr4 y [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1336 1336] [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR02580 02580] y y cas7
cmr5 cmr5 y [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG3337 3337] [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01881 01881] y
cmr6 cmr6 y [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1604 1604] [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01898 01898] y y cas7
csa5 csa5 y [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01878 01878] y
csaX csaX y [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR03876 03876]
csb1 GSU0053 y y
csb2 y y
csb3 y y
csc1 csc1 y y cas5
csc2 csc2 [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1337 1337] y y cas7
cse1 cse1 casA y [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR02547 02547] y
cse2 cse2 casB y [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR02548 02548] y
csf1 csf1 y
csf2 csf2 y y cas7
csf3 csf3 y y
csf4 csf4 y
csm2 csm2 y [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01870 01870] y
csm3 csc2 y [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1337 1337] y y cas7
csm3 y [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1337 1337] y y cas7
csm4 csm4 y [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1567 1567] [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01903 01903] y y cas5
csm5 csm5 y [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1332 1332] [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01899 01899] y y cas7
csm6 APE2256 y [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1517 1517] transctiption regulation [62]
csm6 y [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1517 1517] [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR02672 02672] transctiption regulation [62]
csn2 csn2 y [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01866 01866]
csx1 DXTHG y [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1517 1517], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG4006 4006] Helix-turn-helix, transcription regulation [13]
NE0113 y [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1517 1517], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG4006 4006] Helix-turn-helix, transcription regulation [13]
TIGR02710 y [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1517 1517], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG4006 4006] Helix-turn-helix, transcription regulation [13]
csa3 y [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1517 1517], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG4006 4006] [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR01884 01884] Helix-turn-helix, transcription regulation [13]
csx1 y [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1517 1517], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG4006 4006] Helix-turn-helix, transcription regulation [13]
csx2 y [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1517 1517], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG4006 4006] Helix-turn-helix, transcription regulation [13]
csx10 csx10 y y
csx14 y
csx15
csx16 VVA1548 y
csx17 y
csx3 csx3 y
csy1 csy1 y [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR02564 02564] y
csy2 csy2 y [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR02565 02565] y y cas5
csy3 csy3 y [http://www.ebi.ac.uk/interpro/ISignature?ac=TIGR02566 02566] y cas7
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