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Team:UQ-Australia/Modeling
From 2011.igem.org
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| - | We | + | At the completion of the experimental work, we should expect a working clock BioBrick, which should exhibit oscillatory behaviour. We wish to characterise how our clock BioBrick oscillates. |
| + | Of interest is the frequency and regularity at which it oscillates and whether multiple cells containing our BioBrick oscillate in time with each other. | ||
| - | + | The modelling will involve the mathematical characterisation of the kinetics and synchronisation of the oscillation of our bacteria. | |
| + | The kinetics involve modelling how fast our bacteria cells will oscillate and the shape of their oscillation pattern. | ||
| + | The synchronisation is to characterise how quickly nearby cells would couple any synchronise their oscillation. | ||
| - | + | To give a rough idea of how our cells should be oscillating, mathematical models were described from literature. These would ideally be compared with experimental characterisation of the oscillation. | |
| + | |||
| + | == Kinetics == | ||
| + | |||
| + | |||
| + | == Synchronisation == | ||
| + | |||
| + | We have our cells, which are oscillating. Experimentally, we would have a dish of many cells, most of which will be oscillating, but not necessarily oscillation in time with each other. Realistically, for most practical purposes, we would require that the cells are oscillating in a manner such that they are synchronised. | ||
| + | Of interest to us would be how each cell synchronises itself with its neighbour. We could mathematically characterise this synchronisation. To generalise this, we could model this as the behaviour of many oscillators. | ||
| + | |||
| + | So, of particular interest to us would be the behaviour of, at the very simplest step, two oscillators coupling with each other. | ||
| + | Thus we intend to investigate the coupling of two oscillators in a biological context. | ||
Revision as of 12:26, 9 August 2011
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At the completion of the experimental work, we should expect a working clock BioBrick, which should exhibit oscillatory behaviour. We wish to characterise how our clock BioBrick oscillates. Of interest is the frequency and regularity at which it oscillates and whether multiple cells containing our BioBrick oscillate in time with each other.
The modelling will involve the mathematical characterisation of the kinetics and synchronisation of the oscillation of our bacteria. The kinetics involve modelling how fast our bacteria cells will oscillate and the shape of their oscillation pattern. The synchronisation is to characterise how quickly nearby cells would couple any synchronise their oscillation.
To give a rough idea of how our cells should be oscillating, mathematical models were described from literature. These would ideally be compared with experimental characterisation of the oscillation.
Kinetics
Synchronisation
We have our cells, which are oscillating. Experimentally, we would have a dish of many cells, most of which will be oscillating, but not necessarily oscillation in time with each other. Realistically, for most practical purposes, we would require that the cells are oscillating in a manner such that they are synchronised. Of interest to us would be how each cell synchronises itself with its neighbour. We could mathematically characterise this synchronisation. To generalise this, we could model this as the behaviour of many oscillators.
So, of particular interest to us would be the behaviour of, at the very simplest step, two oscillators coupling with each other. Thus we intend to investigate the coupling of two oscillators in a biological context.
