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Team:IIT Madras/Dry lab/Modelling/Simulations
From 2011.igem.org
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<h3><b><u> Simulations for Proof of Concept</a></u></b></h3><br/> | <h3><b><u> Simulations for Proof of Concept</a></u></b></h3><br/> | ||
| - | <p>Concept: Increase in growth rate due to Proteorhodopsin in Carbon stress conditions | + | <p>Concept: Increase in growth rate due to Proteorhodopsin in Carbon stress conditions</br> |
Simulations for Proof of Concept: We varied glucose uptake rates in the range 0.5-12 mmol/g-dw hr and calculated growth rates for Model_WT and Model_PR. Observing percentage increase in growth rate we could deduce the advantage given to cell due to Proteorhodopsin’s light driven proton efflux.</br> | Simulations for Proof of Concept: We varied glucose uptake rates in the range 0.5-12 mmol/g-dw hr and calculated growth rates for Model_WT and Model_PR. Observing percentage increase in growth rate we could deduce the advantage given to cell due to Proteorhodopsin’s light driven proton efflux.</br> | ||
Observations: 9-30% increase in growth rate was observed due to Proteorhodopsin at high carbon stress conditions.<img src="https://static.igem.org/mediawiki/2011/1/10/Table-1.jpg" length="600" width="600"></p><br/><br/> | Observations: 9-30% increase in growth rate was observed due to Proteorhodopsin at high carbon stress conditions.<img src="https://static.igem.org/mediawiki/2011/1/10/Table-1.jpg" length="600" width="600"></p><br/><br/> | ||
Revision as of 03:40, 29 October 2011
Simulations for Proof of Concept
Concept: Increase in growth rate due to Proteorhodopsin in Carbon stress conditions
Simulations for Proof of Concept: We varied glucose uptake rates in the range 0.5-12 mmol/g-dw hr and calculated growth rates for Model_WT and Model_PR. Observing percentage increase in growth rate we could deduce the advantage given to cell due to Proteorhodopsin’s light driven proton efflux.
Observations: 9-30% increase in growth rate was observed due to Proteorhodopsin at high carbon stress conditions.
Figure 1 and 2 : % Increase in growth rate observed due to Proteorhodopsin (Proton efflux = 2 and 10 mmol/g-dw hr) for varying glucose uptake rates respectively.
According to the model the following reactions showed major flux changes due to Proteorhodopsin :
- 'adentylate kinase GTP '
- 'adenosine hydrolase'
- 'dihydroorotic acid menaquinone 8
- '3 isopropylmalate dehydrogenase'
- 'psicoselysine transport via proton symport periplasm
- 'purine nucleoside phosphorylase Deoxyadenosine '
- 'L threonine via sodium symport periplasm '
