Team:Paris Bettencourt/Modeling/Assisted diffusion/Membrane tension
From 2011.igem.org
Line 111: | Line 111: | ||
</center> | </center> | ||
</p> | </p> | ||
+ | |||
+ | |||
+ | <!-- PAGE FOOTER -- ITEMS FROM COLUMN ! HAVE BEEN MOVED HERE -- RDR --> | ||
+ | |||
+ | <div id="footer-wrapper"> | ||
+ | <div id="footer"> | ||
+ | <div id="f-poweredbyico"><a href="http://www.mediawiki.org/"><img src="/wiki/skins/common/images/poweredby_mediawiki_88x31.png" height="31" width="88" alt="Powered by MediaWiki" /></a></div> <div id="f-copyrightico"><a href="http://creativecommons.org/licenses/by/3.0/"><img src="http://i.creativecommons.org/l/by/3.0/88x31.png" alt="Attribution 3.0 Unported" width="88" height="31" /></a></div> <ul id="f-list"> | ||
+ | |||
+ | |||
+ | <!-- Recentchanges is not handles well DEBUG --> | ||
+ | <li id="t-recentchanges"><a href="/Special:RecentChanges" | ||
+ | title='Recent changes'>Recent changes</a></li> | ||
+ | |||
+ | <li id="t-whatlinkshere"><a href="/Special:WhatLinksHere/Team:Paris_Bettencourt/Modeling" | ||
+ | title="List of all wiki pages that link here [j]" accesskey="j">What links here</a></li> | ||
+ | |||
+ | <li id="t-recentchangeslinked"><a href="/Special:RecentChangesLinked/Team:Paris_Bettencourt/Modeling" | ||
+ | title="Recent changes in pages linked from this page [k]" accesskey="k">Related changes</a></li> | ||
+ | |||
+ | |||
+ | |||
+ | <li id="t-upload"><a href="/Special:Upload" | ||
+ | title="Upload files [u]" accesskey="u">Upload file</a> | ||
+ | </li> | ||
+ | <li id="t-specialpages"><a href="/Special:SpecialPages" | ||
+ | title="List of all special pages [q]" accesskey="q">Special pages</a> | ||
+ | |||
+ | </li> | ||
+ | <li><a href='/Special:Preferences'>My preferences</a></li> | ||
+ | </ul> | ||
+ | </div> <!-- close footer --> | ||
+ | <div id='footer'> | ||
+ | <ul id="f-list"> | ||
+ | |||
+ | <li id="t-print"><a href="/wiki/index.php?title=Team:Paris_Bettencourt/Modeling&printable=yes" | ||
+ | title="Printable version of this page [p]" accesskey="p">Printable version</a> | ||
+ | |||
+ | </li> | ||
+ | |||
+ | <li id="t-permalink"><a href="/wiki/index.php?title=Team:Paris_Bettencourt/Modeling&oldid=86565" | ||
+ | title="Permanent link to this revision of the page">Permanent link</a> | ||
+ | </li> | ||
+ | |||
+ | |||
+ | <li id="privacy"><a href="/2011.igem.org:Privacy_policy" title="2011.igem.org:Privacy policy">Privacy policy</a></li> | ||
+ | <li id="disclaimer"><a href="/2011.igem.org:General_disclaimer" title="2011.igem.org:General disclaimer">Disclaimers</a></li> | ||
+ | </ul> | ||
+ | |||
+ | </div> <!-- close footer --> | ||
+ | </div> <!-- close footer-wrapper --> | ||
+ | |||
+ | </div> | ||
</html> | </html> |
Revision as of 16:31, 23 October 2011
Membrane tension calculation
Using statistical physics approach, we can say that the phase space has 4N dimensions: two dimensions of impulsion and two dimensions of coordinate for each particle (N is the number of particles in the system).
Can we describe the interaction between two phospholipids in the membrane? The question is complicated, but we will demonstrate that by describing properly the phospholipid, as it is reasonable to fit a Lennard-Jones potential energy to this interaction. The energy of binding is smaller and the speed of sliding of one phospholipid against another is slower than the internal vibration of the chemical bounds and the internal conformers rotation of the CH2 tails. Though, in Intermolecular Forces by Israelachvili, the author shows that a phospholipid trapped in a bilayer can be aproximated by a section of cone. The section of cones is an individual, and the others are sections of cone joining the previous one. The shape of the sections are giving the shape of the global structure.
Speaking in terms of energy, once we have these cones, it is reasonable to fit a Lennard-Jones potential to this interaction. If the cones are interpenetrating, a steric repulsion keeps the molecules apart, and the hydrophobic interaction that joins one lipid with the other acts as an attractive force keeping the coherence of the membrane. We will discuss later about the value of the two coefficients.
The membrane tension calculation
Some hypothesis used :
- We deal with a system under fixed temperature, so we can reason in canonical ensemble terminology
- Every bacterium in this model has a perfectly spherical form, so each phospholipid on it has 4 degrees of freedom
- In this model we will consider phosphlipids equally distributed on the membrane and only the initial density of this distribution can change