Team:Hong Kong-CUHK/Project/background

From 2011.igem.org

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<h3>Background</h3>
 
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P<sub>gad</sub> is chloride-sensitive promoter which was first discovered in <em>Lactococcuslactis</em><sup>1</sup>, which is a gram-positive bacterium which can live in acidic environment. P<sub>gad</sub> operon (Fig. 1) provides hydrochloric acid feedback mechanism to adjust intracellular metabolism, in order to survive in acidic environment<sup>2</sup>. In this operon, gadC is glutamate-gamma-aminobutyrate antiporter and gadB is glutamatedecarboxylase. They are both involved in intracellular pH regulation and co-expressed in the same operon under the control of P<sub>gad</sub><sup>2</sup>. The gene before P<sub>gad</sub>, named gadR, which is constitutively expressed under the control of P<sub>gadR</sub>, is a positive regulator of P<sub>gad</sub> coupled genes while intracellular chloride is level elevated<sup>2</sup>. When intracellular pH decreases, the expression of gadB and gadC is enhanced due to the action of gadR and confers glutamate-dependent acid resistance in <em>L. lactis</em><sup>2</sup>.
 
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J. Sanders et al. tried to developchloride-sensitive expression cassette using P<sub>gad</sub> operon<sup>3</sup>.&nbsp; They constructed the cassette from bp 821 to2071 of GenBank sequence AF005098, which includes P<sub>gadR</sub>, gadR, P<sub>gad</sub>and the starting codon ATG, and replaced downstream report genes<sup>3</sup>. They managetransforming the cassette to <em>E.coli</em> and varying the expression of report genes under different sodium chloride concentrations<sup>3</sup>. In our project, we try to build light-coupled chloride expression switch based on this design.
 
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References
 
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1.&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; Sanders, J.W. et al. Identifcation of a sodium chloride-regulated promoter in Lactococcus lactis by single-copy chromosomal fusion with a reporter gene. <em>Mol Gen Genet</em> <strong>257</strong>, 681-685(1998).
 
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2.&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; Sanders, J.W. et al. A chloride-inducible acid resistance mechanism in Lactococcus lactis and its regulation. <em>Molecular microbiology </em><strong>27</strong>, 299-310(1998).
 
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3.&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; Sanders, J.W., Venema, G. &amp; Kok, J. A chloride-inducible gene expression cassette and its use in induced lysis of Lactococcus lactis. <em>Appliedand environmental microbiology</em> <strong>63</strong>, 4877(1997).
 
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<h3>Background</h3>
 
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P<sub>gad</sub> is chloride-sensitive promoter whichwas first discovered in <em>Lactococcuslactis</em><sup>1</sup>, whichis a gram-positive bacterium which canlive in acidic environment. P<sub>gad</sub> operon (Fig. 1) provideshydrochloric acid feedback mechanism to adjust intracellular metabolism, inorder to survive in acidic environment<sup>2</sup>. In thisoperon, gadC is glutamate-gamma-aminobutyrate antiporter and gadB is glutamate decarboxylase. They are both involved in intracellular pH regulation andco-expressed in the same operon under the control of P<sub>gad</sub><sup>2</sup>. The genebefore P<sub>gad</sub>, named gadR, which is constitutively expressed under thecontrol of P<sub>gadR</sub>, is a positive regulator of P<sub>gad</sub> coupledgenes while intracellular chloride is level elevated<sup>2</sup>. Whenintracellular pH decreases, the expression of gadB and gadC is enhanced due tothe action of gadR and confers glutamate-dependent acid resistance in <em>L. lactis</em><sup>2</sup>.
 
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J. Sanders et al. tried to develop chloride-sensitive expression cassette using P<sub>gad</sub> operon<sup>3</sup>.&nbsp; They constructed the cassette from bp 821 to 2071 of GenBank sequence AF005098, which includes P<sub>gadR</sub>, gadR, P <sub>gad</sub>and the starting codon ATG, and replaced downstream report genes<sup>3</sup>. They manage transforming the cassette to <em>E. coli</em>and varying the expression of report genes under different sodium chlorideconcentrations<sup>3</sup>. In ourproject, we try to build light-coupled chloride expression switch based on thisdesign.
 
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References
 
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1.&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; Sanders, J.W. et al. Identifcation of asodium chloride-regulated promoter in Lactococcus lactis by single-copychromosomal fusion with a reporter gene. <em>Mol Gen Genet</em> <strong>257</strong>, 681-685(1998).
 
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2.&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; Sanders, J.W. et al. A chloride-inducible acid resistancemechanism in Lactococcus lactis and its regulation. <em>Molecular microbiology</em><strong>27</strong>, 299-310(1998).
 
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3.&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; Sanders, J.W., Venema, G. &amp; Kok, J. A chloride-induciblegene expression cassette and its use in induced lysis of Lactococcus lactis. <em>Appliedand environmental microbiology</em> <strong>63</strong>, 4877(1997).
 
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<h3>Previous related projects</h3>
<h3>Previous related projects</h3>
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<h3>Entropy-mixing battery</h3>
 
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<strong>1.&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Introduction of mechanism</strong>
 
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In the nature, the water cycle is driven by solar energy. One part of the water cycle is that solar energy evaporates water in the sea to become fresh water through inland precipitation. From another point of view, during evaporation, the entropy of different ions in the sea, mainly sodium, chloride and potassium, decreases as ion concentration iselevated. It is a common phenomenon when high concentration solution of a certain solvent, such as sodium chloride, is diluted, the entropy of the solvent increases and the energy is released as heat. Thus the ocean is actually a gigantic energy reservoir. Its energy is transformed from solar energy and stored as salinity potential. When sea water mixes with fresh water from river, massive amount of energy is released.
 
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Fig.1&nbsp; Cycles of mixing-entropy battery.
 
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Recently, some institutes are devoting great efforts to seek efficient methods of extracting energy released from mixing sea water and fresh water. Mixing-entropy battery is thus designed to convert salinity potential to electricity<sup>1</sup>(Fig. 1). One pair of electrodes can specifically bind sodium ions or chloride ions, thus separating the charge when they are immersed in high salinity solution, while decreasing the sodium chloride concentration in the solution.During this process, electrons in the cathode flow across electrical wires and reach the anode when there is complete electric circuit, since the immobile negative charges (chloride) accumulating in the cathode repels electrons, while immobile positive charges (sodium) accumulating in the anode attract electrons.When the electrodes achieve equilibrium with the solution, there is no electric current anymore. The next step is to immerse full-loaded electrodes in freshwater. Due to the salinity difference, sodium ions and chloride ions are released from the electrodes and those exceeded electrons in anode flow back to cathode to resume the original state. When the equilibrium is achieved, the electrodes are re-immersed to high salinity water to start another cycle<sup>1</sup>.
 
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However this method only has high efficiency near estuaries. To solve this limitation, were design this method using halorhodopsin-transformed <em>E. coli</em>. In our project, we fabricated the pair of electrodes according to W. Guo’s method<sup>2</sup> and withdrew currents from the battery. This is the first attempt to generate electricity from light energy by microorganism system in iGEM competition.
 
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1.&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; La Mantia, F. et al.Batteries for Efficient Energy Extraction from a Water Salinity Difference. <em>Nanoletters</em> 0-3(2011).at &lt;http://pubs.acs.org/doi/abs/10.1021/nl200500s&gt;
 
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2.&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; Guo, W. et al. Energy Harvesting with Single-Ion-Selective Nanopores: A Concentration-Gradient-Driven Nanofluidic Power Source. <em>Advanced Functional Materials</em> <strong>20</strong>, 1339-1344(2010).
 
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Revision as of 16:18, 5 October 2011

Previous related projects

 

In 2010 iGEM competition, Queens-Canada team submited halorhodopsin from H. salinarum as biobricks and inserted this gene to C. elegans. However, it was not well characterized. This year, we are trying to clone halorhdopsin from N. pharaonis, which has already been successfully introduced and proved to perform complete light cycles in E. coli, to our biobrick system1. We aim to characterize the efficiency of this halorhodopsin to be a well-documented biobrick and a useful tool in E. coli.

 

In previous iGEM projects, various light sensors have been developed, including red light sensor(UT Austin, 2004), green light sensor (Tokyo-Nokogen, 2009) and blue light sensor (University of Edinburgh, 2010). They are all light-induced fusion transcription factors that trigger gene expression under the control ofspecific promoters, facilitating simply on/off switch and light-coupled communication. However, our design makes halorhodopsin not only a dynamic tunable light sensor – by coupling with chloride sensitive promoters (e.g. Pgad),but also an energy converter – by storing solar energy as osmolality potential and further converted to electricity. Our project would provide a wilder scope of applications from signal transduction and gene regulation to energy generation.

 

 

References

1.        Hohenfeld, I. Purification of histidine tagged bacteriorhodopsin, pharaonis halorhodopsin and pharaonis sensory rhodopsin II functionally expressed in Escherichia coli. FEBS Letters 442,198-202(1999).

 

 

 


"Creativity is thinking up new things. Innovation is doing new things." - Theodore Levitt

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