Team:UT-Tokyo/LabNote
From 2011.igem.org
(Difference between revisions)
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*Planting Negative control | *Planting Negative control | ||
*Making frozen stock | *Making frozen stock | ||
- | *Transformation(BBa_E0240, <nowiki>#</nowiki>3, B0015, <nowiki>#</nowiki>5, <nowiki>#</nowiki>10, ,J31000, ,J44000) | + | <html>*Transformation(BBa_E0240, <nowiki>#</nowiki><span class="part_num">3</span></html<html>, B0015, <nowiki>#</nowiki><span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">10</span></html, ,J31000, ,J44000) |
<html></div></html> | <html></div></html> | ||
Line 257: | Line 257: | ||
<html><div class="labDay"></html> | <html><div class="labDay"></html> | ||
==='11/06/17(Fri)=== | ==='11/06/17(Fri)=== | ||
- | *Picking up colony(<nowiki>#</nowiki>3, B0015, B0040,<nowiki>#</nowiki>9, J31000, J44000) | + | <html>*Picking up colony(<nowiki>#</nowiki><span class="part_num">3</span></html<html>, B0015, B0040,<nowiki>#</nowiki><span class="part_num">9</span></html, J31000, J44000) |
- | *Miniprep(<nowiki>#</nowiki>5) | + | <html>*Miniprep(<nowiki>#</nowiki><span class="part_num">5</span></html) |
- | *Dissolution(<nowiki>#</nowiki>1, <nowiki>#</nowiki>2, K16500, <nowiki>#</nowiki>24) | + | <html>*Dissolution(<nowiki>#</nowiki><span class="part_num">1</span></html<html>, <nowiki>#</nowiki><span class="part_num">2</span></html<html>, K16500, <nowiki>#</nowiki><span class="part_num">24</span></html) |
<html></div></html> | <html></div></html> | ||
<html><div class="labDay"></html> | <html><div class="labDay"></html> | ||
==='11/06/21(Tue)=== | ==='11/06/21(Tue)=== | ||
- | *Making frozen stock(<nowiki>#</nowiki>3, B0015, B0040, <nowiki>#</nowiki>9, J31000, J44000) | + | <html>*Making frozen stock(<nowiki>#</nowiki><span class="part_num">3</span></html<html>, B0015, B0040, <nowiki>#</nowiki><span class="part_num">9</span></html, J31000, J44000) |
- | *Passafe culture(<nowiki>#</nowiki>9, J31000) | + | <html>*Passafe culture(<nowiki>#</nowiki><span class="part_num">9</span></html, J31000) |
*Nanodrop again | *Nanodrop again | ||
<html></div></html> | <html></div></html> | ||
Line 271: | Line 271: | ||
<html><div class="labDay"></html> | <html><div class="labDay"></html> | ||
==='11/06/22(Wed)=== | ==='11/06/22(Wed)=== | ||
- | *Miniprep(<nowiki>#</nowiki>9, J31000) | + | <html>*Miniprep(<nowiki>#</nowiki><span class="part_num">9</span></html, J31000) |
*Making competent cell | *Making competent cell | ||
<html></div></html> | <html></div></html> | ||
Line 286: | Line 286: | ||
*Digest(product of Miniprep 06/09 EPcut) | *Digest(product of Miniprep 06/09 EPcut) | ||
*Electrophoresis | *Electrophoresis | ||
- | *Defrost and transformation(BBa_E0030, E0020, <nowiki>#</nowiki>14, I712052,<nowiki>#</nowiki> | + | <html>*Defrost and transformation(BBa_E0030, E0020, <nowiki>#</nowiki><span class="part_num">14</span></html<html>, I712052,<nowiki>#</nowiki><span class="part_num">17</span></html) |
*Making 1×TAE, agarose gel, LB medium, LB plate(amp), | *Making 1×TAE, agarose gel, LB medium, LB plate(amp), | ||
<html></div></html> | <html></div></html> | ||
Line 302: | Line 302: | ||
==='11/07/01(Fri)=== | ==='11/07/01(Fri)=== | ||
*Digest(EPcut) | *Digest(EPcut) | ||
- | *Miniprep(BBa_E0030, E0020, <nowiki>#</nowiki>14, I712052, <nowiki>#</nowiki>17) | + | <html>*Miniprep(BBa_E0030, E0020, <nowiki>#</nowiki><span class="part_num">14</span></html<html>, I712052, <nowiki>#</nowiki><span class="part_num">17</span></html) |
<html></div></html> | <html></div></html> | ||
Line 308: | Line 308: | ||
==='11/07/05(Tue)=== | ==='11/07/05(Tue)=== | ||
*Electrophoresis(product of digest 07/01) | *Electrophoresis(product of digest 07/01) | ||
- | *Digest(<nowiki>#</nowiki>9, <nowiki>#</nowiki>14, <nowiki>#</nowiki>17, <nowiki>#</nowiki>3, <nowiki>#</nowiki>5) | + | <html>*Digest(<nowiki>#</nowiki><span class="part_num">9</span></html<html>, <nowiki>#</nowiki><span class="part_num">14</span></html<html>, <nowiki>#</nowiki><span class="part_num">17</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span></html<html>, <nowiki>#</nowiki><span class="part_num">5</span></html) |
*Making antibiotic stock(1000×)(Km,Cm) | *Making antibiotic stock(1000×)(Km,Cm) | ||
<html></div></html> | <html></div></html> | ||
Line 315: | Line 315: | ||
==='11/07/06(Wed)=== | ==='11/07/06(Wed)=== | ||
*Gel extraction (pre)(BBa_I712052) | *Gel extraction (pre)(BBa_I712052) | ||
- | *Picking up colony(Ba_J23119, <nowiki>#</nowiki>2, <nowiki>#</nowiki>24, <nowiki>#</nowiki>10) | + | <html>*Picking up colony(Ba_J23119, <nowiki>#</nowiki><span class="part_num">2</span></html<html>, <nowiki>#</nowiki><span class="part_num">24</span></html<html>, <nowiki>#</nowiki><span class="part_num">10</span></html) |
*Making agarose gel | *Making agarose gel | ||
<html></div></html> | <html></div></html> | ||
Line 321: | Line 321: | ||
<html><div class="labDay"></html> | <html><div class="labDay"></html> | ||
==='11/07/07(Thu)=== | ==='11/07/07(Thu)=== | ||
- | *Digest(BBa_E0240, <nowiki>#</nowiki>14, <nowiki>#</nowiki>17, <nowiki>#</nowiki>3, <nowiki>#</nowiki> | + | <html>*Digest(BBa_E0240, <nowiki>#</nowiki><span class="part_num">14</span></html<html>, <nowiki>#</nowiki><span class="part_num">17</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span></html<html>, <nowiki>#</nowiki><span class="part_num">5</span></html) |
- | *Defrost(BBa_E1010, K325101, <nowiki>#</nowiki>20, <nowiki>#</nowiki>21, <nowiki>#</nowiki>22, <nowiki>#</nowiki> | + | <html>*Defrost(BBa_E1010, K325101, <nowiki>#</nowiki><span class="part_num">20</span></html<html>, <nowiki>#</nowiki><span class="part_num">21</span></html<html>, <nowiki>#</nowiki><span class="part_num">22</span></html<html>, <nowiki>#</nowiki><span class="part_num">23</span></html) |
- | *Transformation(BBa_K145001, <nowiki>#</nowiki>20, <nowiki>#</nowiki>21, <nowiki>#</nowiki> | + | <html>*Transformation(BBa_K145001, <nowiki>#</nowiki><span class="part_num">20</span></html<html>, <nowiki>#</nowiki><span class="part_num">21</span></html<html>, <nowiki>#</nowiki><span class="part_num">22</span></html) |
*Making LB plate(Cm,Km) | *Making LB plate(Cm,Km) | ||
<html></div></html> | <html></div></html> | ||
Line 329: | Line 329: | ||
<html><div class="labDay"></html> | <html><div class="labDay"></html> | ||
==='11/07/08(Fri)=== | ==='11/07/08(Fri)=== | ||
- | *Miniprep(BBa_J23119, <nowiki>#</nowiki>2, <nowiki>#</nowiki>10, <nowiki>#</nowiki>24) | + | <html>*Miniprep(BBa_J23119, <nowiki>#</nowiki><span class="part_num">2</span></html<html>, <nowiki>#</nowiki><span class="part_num">10</span></html<html>, <nowiki>#</nowiki><span class="part_num">24</span></html) |
<html></div></html> | <html></div></html> | ||
<html><div class="labDay"></html> | <html><div class="labDay"></html> | ||
==='11/07/11(Mon)=== | ==='11/07/11(Mon)=== | ||
- | *Gel extraction(<nowiki>#</nowiki>9 <nowiki>#</nowiki>14, <nowiki>#</nowiki>17) | + | <html>*Gel extraction(<nowiki>#</nowiki><span class="part_num">9</span></html<html> <nowiki>#</nowiki><span class="part_num">14</span></html<html>, <nowiki>#</nowiki><span class="part_num">17</span></html) |
- | *Transformation(<nowiki>#</nowiki>1, <nowiki>#</nowiki>11, <nowiki>#</nowiki>20, <nowiki>#</nowiki>21, K325101, <nowiki>#</nowiki>22, <nowiki>#</nowiki>23) | + | <html>*Transformation(<nowiki>#</nowiki><span class="part_num">1</span></html<html>, <nowiki>#</nowiki><span class="part_num">11</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span></html<html>, <nowiki>#</nowiki><span class="part_num">21</span></html<html>, K325101, <nowiki>#</nowiki><span class="part_num">22</span></html<html>, <nowiki>#</nowiki><span class="part_num">23</span></html) |
<html></div></html> | <html></div></html> | ||
Line 345: | Line 345: | ||
<html><div class="labDay"></html> | <html><div class="labDay"></html> | ||
==='11/07/13(Wed)=== | ==='11/07/13(Wed)=== | ||
- | *Frozen stock(<nowiki>#</nowiki>1(18A), <nowiki>#</nowiki>20(6G), <nowiki>#</nowiki>21(2O), <nowiki>#</nowiki>14(6N), <nowiki>#</nowiki>23(2F)) | + | <html>*Frozen stock(<nowiki>#</nowiki><span class="part_num">1</span></html<html>(18A), <nowiki>#</nowiki><span class="part_num">20</span></html<html>(6G), <nowiki>#</nowiki><span class="part_num">21</span></html<html>(2O), <nowiki>#</nowiki><span class="part_num">14</span></html<html>(6N), <nowiki>#</nowiki><span class="part_num">23</span></html(2F)) |
- | *Picking up colony(<nowiki>#</nowiki>11) | + | <html>*Picking up colony(<nowiki>#</nowiki><span class="part_num">11</span></html) |
- | *Gel extraction(B<nowiki>#</nowiki>3, <nowiki>#</nowiki>5) | + | <html>*Gel extraction(B<nowiki>#</nowiki><span class="part_num">3</span></html<html>, <nowiki>#</nowiki><span class="part_num">5</span></html) |
- | *Digest (<nowiki>#</nowiki>2 SPcut) | + | <html>*Digest (<nowiki>#</nowiki><span class="part_num">2</span></html SPcut) |
<html></div></html> | <html></div></html> | ||
<html><div class="labDay"></html> | <html><div class="labDay"></html> | ||
==='11/07/14(Thu)=== | ==='11/07/14(Thu)=== | ||
- | *Miniprep(<nowiki>#</nowiki>1, <nowiki>#</nowiki>11, <nowiki>#</nowiki>20, <nowiki>#</nowiki>21, <nowiki>#</nowiki>22, <nowiki>#</nowiki>23) | + | <html>*Miniprep(<nowiki>#</nowiki><span class="part_num">1</span></html<html>, <nowiki>#</nowiki><span class="part_num">11</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span></html<html>, <nowiki>#</nowiki><span class="part_num">21</span></html<html>, <nowiki>#</nowiki><span class="part_num">22</span></html<html>, <nowiki>#</nowiki><span class="part_num">23</span></html) |
- | *Electrophoresis(<nowiki>#</nowiki>2) | + | <html>*Electrophoresis(<nowiki>#</nowiki><span class="part_num">2</span></html) |
- | *Gel extraction(<nowiki>#</nowiki>2, <nowiki>#</nowiki>3, <nowiki>#</nowiki>5) | + | <html>*Gel extraction(<nowiki>#</nowiki><span class="part_num">2</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span></html<html>, <nowiki>#</nowiki><span class="part_num">5</span></html) |
- | *Passafe(<nowiki>#</nowiki>11) | + | <html>*Passafe(<nowiki>#</nowiki><span class="part_num">11</span></html) |
*Making LB+amp | *Making LB+amp | ||
<html></div></html> | <html></div></html> | ||
Line 362: | Line 362: | ||
<html><div class="labDay"></html> | <html><div class="labDay"></html> | ||
==='11/07/15(Fri)=== | ==='11/07/15(Fri)=== | ||
- | *Ligation(<nowiki>#</nowiki>2-<nowiki>#</nowiki>9, <nowiki>#</nowiki>2-<nowiki>#</nowiki>3, <nowiki>#</nowiki>14-<nowiki>#</nowiki>5, <nowiki>#</nowiki>17-<nowiki>#</nowiki>5) | + | <html>*Ligation(<nowiki>#</nowiki><span class="part_num">2</span>-</html<html><nowiki>#</nowiki><span class="part_num">9</span></html<html>, <nowiki>#</nowiki><span class="part_num">2</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span></html<html>, <nowiki>#</nowiki><span class="part_num">14</span>-</html<html><nowiki>#</nowiki><span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">17</span>-</html<html><nowiki>#</nowiki><span class="part_num">5</span></html) |
- | *Transformation(<nowiki>#</nowiki>2-<nowiki>#</nowiki>9, <nowiki>#</nowiki>2-<nowiki>#</nowiki>3, <nowiki>#</nowiki>14-<nowiki>#</nowiki>5, <nowiki>#</nowiki>17-<nowiki>#</nowiki>5) | + | <html>*Transformation(<nowiki>#</nowiki><span class="part_num">2</span>-</html<html><nowiki>#</nowiki><span class="part_num">9</span></html<html>, <nowiki>#</nowiki><span class="part_num">2</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span></html<html>, <nowiki>#</nowiki><span class="part_num">14</span>-</html<html><nowiki>#</nowiki><span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">17</span>-</html<html><nowiki>#</nowiki><span class="part_num">5</span></html) |
*Dispensing Ligation Buffer | *Dispensing Ligation Buffer | ||
- | *Frozen stock(<nowiki>#</nowiki>11) | + | <html>*Frozen stock(<nowiki>#</nowiki><span class="part_num">11</span></html) |
<html></div></html> | <html></div></html> | ||
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*Making Master plate | *Making Master plate | ||
*Testing product of Miniprep | *Testing product of Miniprep | ||
- | *Transformation (<nowiki>#</nowiki>2, <nowiki>#</nowiki>27, <nowiki>#</nowiki>28) | + | <html>*Transformation (<nowiki>#</nowiki><span class="part_num">2</span></html<html>, <nowiki>#</nowiki><span class="part_num">27</span></html<html>, <nowiki>#</nowiki><span class="part_num">28</span></html) |
<html></div></html> | <html></div></html> | ||
<html><div class="labDay"></html> | <html><div class="labDay"></html> | ||
==='11/07/21(Thu)=== | ==='11/07/21(Thu)=== | ||
- | *Miniprep(<nowiki>#</nowiki>2-3, <nowiki>#</nowiki>2-9, <nowiki>#</nowiki>14-5, <nowiki>#</nowiki>17-5, <nowiki>#</nowiki>11, <nowiki>#</nowiki>20) | + | <html>*Miniprep(<nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span></html<html>, <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">9</span></html<html>, <nowiki>#</nowiki><span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">17</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">11</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span></html) |
*Testing product | *Testing product | ||
*Digest | *Digest | ||
- | **SPcut : <nowiki>#</nowiki>20, <nowiki>#</nowiki>2-3 | + | <html>**SPcut : <nowiki>#</nowiki><span class="part_num">20</span></html<html>, <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span></html |
- | **XPcut : <nowiki>#</nowiki>10, <nowiki>#</nowiki>11, <nowiki>#</nowiki>14-5, <nowiki>#</nowiki>17-5 | + | <html>**XPcut : <nowiki>#</nowiki><span class="part_num">10</span></html<html>, <nowiki>#</nowiki><span class="part_num">11</span></html<html>, <nowiki>#</nowiki><span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">17</span>-<span class="part_num">5</span></html |
*Making TB | *Making TB | ||
<html></div></html> | <html></div></html> | ||
Line 395: | Line 395: | ||
<html><div class="labDay"></html> | <html><div class="labDay"></html> | ||
==='11/07/22(Fri)=== | ==='11/07/22(Fri)=== | ||
- | *Frozen stock(<nowiki>#</nowiki>2, <nowiki>#</nowiki>2-3, <nowiki>#</nowiki>2-9, <nowiki>#</nowiki>14-5, <nowiki>#</nowiki>17- | + | <html>*Frozen stock(<nowiki>#</nowiki><span class="part_num">2</span></html<html>, <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span></html<html>, <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">9</span></html<html>, <nowiki>#</nowiki><span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">17</span>-<span class="part_num">5</span></html) |
- | *Electrophoresis(<nowiki>#</nowiki> | + | <html>*Electrophoresis(<nowiki>#</nowiki><span class="part_num">20</span></html<html>_SP, <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span></html<html>_SP, <nowiki>#</nowiki><span class="part_num">10</span></html<html>_XP, <nowiki>#</nowiki><span class="part_num">11</span></html<html>_XP, <nowiki>#</nowiki><span class="part_num">14</span>-<span class="part_num">5</span></html<html>_XP, <nowiki>#</nowiki><span class="part_num">17</span>-<span class="part_num">5</span></html_XP) |
*Digest | *Digest | ||
- | **SPcut : <nowiki>#</nowiki>20 | + | <html>**SPcut : <nowiki>#</nowiki><span class="part_num">20</span></html |
- | **XPcut : <nowiki>#</nowiki>10, <nowiki>#</nowiki>11, <nowiki>#</nowiki>14-5, <nowiki>#</nowiki>17-5 | + | <html>**XPcut : <nowiki>#</nowiki><span class="part_num">10</span></html<html>, <nowiki>#</nowiki><span class="part_num">11</span></html<html>, <nowiki>#</nowiki><span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">17</span>-<span class="part_num">5</span></html |
- | *Transformation(<nowiki>#</nowiki>27, <nowiki>#</nowiki>28, product of Miniprep 07/20) | + | <html>*Transformation(<nowiki>#</nowiki><span class="part_num">27</span></html<html>, <nowiki>#</nowiki><span class="part_num">28</span></html, product of Miniprep 07/20) |
<html></div></html> | <html></div></html> | ||
<html><div class="labDay"></html> | <html><div class="labDay"></html> | ||
==='11/07/25(Mon)=== | ==='11/07/25(Mon)=== | ||
- | *Colony check(<nowiki>#</nowiki>2, <nowiki>#</nowiki>2-9) | + | <html>*Colony check(<nowiki>#</nowiki><span class="part_num">2</span></html<html>, <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">9</span></html) |
- | *Gel Extraction(<nowiki>#</nowiki> | + | <html>*Gel Extraction(<nowiki>#</nowiki><span class="part_num">20</span></html<html>_SP, <nowiki>#</nowiki><span class="part_num">10</span></html<html>_XP, <nowiki>#</nowiki><span class="part_num">11</span></html<html>_XP, <nowiki>#</nowiki><span class="part_num">14</span>-<span class="part_num">5</span></html<html>_XP, <nowiki>#</nowiki><span class="part_num">17</span>-<span class="part_num">5</span></html_XP) |
- | *Ligation and Transformation(<nowiki>#</nowiki>20-<nowiki>#</nowiki>9, <nowiki>#</nowiki>3-<nowiki>#</nowiki>11, <nowiki>#</nowiki>3-<nowiki>#</nowiki>14-5, <nowiki>#</nowiki>3-<nowiki>#</nowiki>17-5) | + | <html>*Ligation and Transformation(<nowiki>#</nowiki><span class="part_num">20</span>-</html<html><nowiki>#</nowiki><span class="part_num">9</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-</html<html><nowiki>#</nowiki><span class="part_num">11</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-</html<html><nowiki>#</nowiki><span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-</html<html><nowiki>#</nowiki><span class="part_num">17</span>-<span class="part_num">5</span></html) |
*Defrost Primer(200×, 10×) | *Defrost Primer(200×, 10×) | ||
*Dispensing PCR Mix | *Dispensing PCR Mix | ||
Line 414: | Line 414: | ||
<html><div class="labDay"></html> | <html><div class="labDay"></html> | ||
==='11/07/26(Tue)=== | ==='11/07/26(Tue)=== | ||
- | *Picking up colony and making master plate(<nowiki>#</nowiki>20-9, <nowiki>#</nowiki>3-11, <nowiki>#</nowiki>3-14-5, <nowiki>#</nowiki>3-17-5) | + | <html>*Picking up colony and making master plate(<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">9</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">11</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html) |
- | *Colony PCR(<nowiki>#</nowiki>20-9, <nowiki>#</nowiki>3-11, <nowiki>#</nowiki>3-14-5, <nowiki>#</nowiki>3-17-5) | + | <html>*Colony PCR(<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">9</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">11</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html) |
- | *Digest(<nowiki>#</nowiki>14-5 XPcut,Ecut, <nowiki>#</nowiki>22 SPcut, <nowiki>#</nowiki>23 XPcut) | + | <html>*Digest(<nowiki>#</nowiki><span class="part_num">14</span>-<span class="part_num">5</span></html<html> XPcut,Ecut, <nowiki>#</nowiki><span class="part_num">22</span></html<html> SPcut, <nowiki>#</nowiki><span class="part_num">23</span></html XPcut) |
- | *Ligation(<nowiki>#</nowiki>3-<nowiki>#</nowiki>14-5(Re), <nowiki>#</nowiki>3(Negative control)) | + | <html>*Ligation(<nowiki>#</nowiki><span class="part_num">3</span>-</html<html><nowiki>#</nowiki><span class="part_num">14</span>-<span class="part_num">5</span></html<html>(Re), <nowiki>#</nowiki><span class="part_num">3</span></html(Negative control)) |
- | *Transformation(<nowiki>#</nowiki>15, <nowiki>#</nowiki>27, <nowiki>#</nowiki>28, <nowiki>#</nowiki>30, <nowiki>#</nowiki>3-14-5(Re), <nowiki>#</nowiki>3(Negative control)) | + | <html>*Transformation(<nowiki>#</nowiki><span class="part_num">15</span></html<html>, <nowiki>#</nowiki><span class="part_num">27</span></html<html>, <nowiki>#</nowiki><span class="part_num">28</span></html<html>, <nowiki>#</nowiki><span class="part_num">30</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>(Re), <nowiki>#</nowiki><span class="part_num">3</span></html(Negative control)) |
*Making reagent for TB(KOH, CaCl2, KCl, MnCl2) | *Making reagent for TB(KOH, CaCl2, KCl, MnCl2) | ||
<html></div></html> | <html></div></html> | ||
Line 424: | Line 424: | ||
<html><div class="labDay"></html> | <html><div class="labDay"></html> | ||
==='11/07/27(Wed)=== | ==='11/07/27(Wed)=== | ||
- | *Miniprep(<nowiki>#</nowiki>1, <nowiki>#</nowiki>2, <nowiki>#</nowiki>3, <nowiki>#</nowiki>10, <nowiki>#</nowiki>22, <nowiki>#</nowiki>24, <nowiki>#</nowiki>20-9, <nowiki>#</nowiki>3-11, <nowiki>#</nowiki>3-17-5) | + | <html>*Miniprep(<nowiki>#</nowiki><span class="part_num">1</span></html<html>, <nowiki>#</nowiki><span class="part_num">2</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span></html<html>, <nowiki>#</nowiki><span class="part_num">10</span></html<html>, <nowiki>#</nowiki><span class="part_num">22</span></html<html>, <nowiki>#</nowiki><span class="part_num">24</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">9</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">11</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html) |
*Electrophoresis | *Electrophoresis | ||
<html></div></html> | <html></div></html> | ||
Line 430: | Line 430: | ||
<html><div class="labDay"></html> | <html><div class="labDay"></html> | ||
==='11/07/28(Thu)=== | ==='11/07/28(Thu)=== | ||
- | *Gel extraction(<nowiki>#</nowiki>14- | + | <html>*Gel extraction(<nowiki>#</nowiki><span class="part_num">14</span>-<span class="part_num">5</span></html<html>_XP, <nowiki>#</nowiki><span class="part_num">22</span></html<html>_SP, <nowiki>#</nowiki><span class="part_num">23</span></html_XP) |
*Digest | *Digest | ||
- | **SPcut : <nowiki>#</nowiki>1,<nowiki>#</nowiki>2, <nowiki>#</nowiki>3, <nowiki>#</nowiki>24 | + | <html>**SPcut : <nowiki>#</nowiki><span class="part_num">1</span></html<html>,<nowiki>#</nowiki><span class="part_num">2</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span></html<html>, <nowiki>#</nowiki><span class="part_num">24</span></html |
- | **EScut : <nowiki>#</nowiki>3-11 | + | <html>**EScut : <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">11</span></html |
- | **XPcut : <nowiki>#</nowiki>3-17-5 | + | <html>**XPcut : <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html |
- | *Ligation(<nowiki>#</nowiki>3-<nowiki>#</nowiki>14-5) | + | <html>*Ligation(<nowiki>#</nowiki><span class="part_num">3</span>-</html<html><nowiki>#</nowiki><span class="part_num">14</span>-<span class="part_num">5</span></html) |
*Making TB bugger, LB plate, 0.3% LB plate | *Making TB bugger, LB plate, 0.3% LB plate | ||
<html></div></html> | <html></div></html> | ||
Line 442: | Line 442: | ||
==='11/07/29(Fri)=== | ==='11/07/29(Fri)=== | ||
*Cloning(lexA, cheZ) | *Cloning(lexA, cheZ) | ||
- | *Colony PCR(<nowiki>#</nowiki>3-<nowiki>#</nowiki>14-5) | + | <html>*Colony PCR(<nowiki>#</nowiki><span class="part_num">3</span>-</html<html><nowiki>#</nowiki><span class="part_num">14</span>-<span class="part_num">5</span></html) |
- | *Gel extraction(<nowiki>#</nowiki> | + | <html>*Gel extraction(<nowiki>#</nowiki><span class="part_num">1</span></html<html>_SP, <nowiki>#</nowiki><span class="part_num">2</span></html<html>_SP, <nowiki>#</nowiki><span class="part_num">3</span></html<html>_SP, <nowiki>#</nowiki><span class="part_num">24</span></html<html>_SP, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">11</span></html<html>_ES, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html_XP, lexA, cheZ PCR product) |
- | *Miniprep(<nowiki>#</nowiki>30) | + | <html>*Miniprep(<nowiki>#</nowiki><span class="part_num">30</span></html) |
*Digest(lexA, cheZ PCR product XP cut) | *Digest(lexA, cheZ PCR product XP cut) | ||
<html></div></html> | <html></div></html> | ||
Line 453: | Line 453: | ||
<html><div class="labDay"></html> | <html><div class="labDay"></html> | ||
==='11/08/01(Mon)=== | ==='11/08/01(Mon)=== | ||
- | *Nanodrop(<nowiki>#</nowiki>3-11(1), <nowiki>#</nowiki>1, <nowiki>#</nowiki>3, <nowiki>#</nowiki>24, <nowiki>#</nowiki>2, <nowiki>#</nowiki>3-17-5(4)M<nowiki>#</nowiki>30) | + | <html>*Nanodrop(<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">11</span></html<html>(1), <nowiki>#</nowiki><span class="part_num">1</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span></html<html>, <nowiki>#</nowiki><span class="part_num">24</span></html<html>, <nowiki>#</nowiki><span class="part_num">2</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>(4)M<nowiki>#</nowiki><span class="part_num">30</span></html) |
- | *Digest(<nowiki>#</nowiki>3 SPcut, <nowiki>#</nowiki>5 EXcut, <nowiki>#</nowiki>9 XPcut, <nowiki>#</nowiki>30 XP cut) | + | <html>*Digest(<nowiki>#</nowiki><span class="part_num">3</span></html<html> SPcut, <nowiki>#</nowiki><span class="part_num">5</span></html<html> EXcut, <nowiki>#</nowiki><span class="part_num">9</span></html<html> XPcut, <nowiki>#</nowiki><span class="part_num">30</span></html XP cut) |
*Cloning(lexA, cheZ) | *Cloning(lexA, cheZ) | ||
- | *Gel extraction(<nowiki>#</nowiki>3, <nowiki>#</nowiki>9, <nowiki>#</nowiki>30, pSB1A2) | + | <html>*Gel extraction(<nowiki>#</nowiki><span class="part_num">3</span></html<html>, <nowiki>#</nowiki><span class="part_num">9</span></html<html>, <nowiki>#</nowiki><span class="part_num">30</span></html, pSB1A2) |
- | *Ligation(<nowiki>#</nowiki>2-<nowiki>#</nowiki>3-17-5, <nowiki>#</nowiki>3-11-<nowiki>#</nowiki>5, <nowiki>#</nowiki>14-<nowiki>#</nowiki>5, <nowiki>#</nowiki>3-<nowiki>#</nowiki>23, <nowiki>#</nowiki>22-<nowiki>#</nowiki>9, <nowiki>#</nowiki>3-<nowiki>#</nowiki>30) | + | <html>*Ligation(<nowiki>#</nowiki><span class="part_num">2</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">11</span>-</html<html><nowiki>#</nowiki><span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">14</span>-</html<html><nowiki>#</nowiki><span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-</html<html><nowiki>#</nowiki><span class="part_num">23</span></html<html>, <nowiki>#</nowiki><span class="part_num">22</span>-</html<html><nowiki>#</nowiki><span class="part_num">9</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-</html<html><nowiki>#</nowiki><span class="part_num">30</span></html) |
- | *Transformation(<nowiki>#</nowiki>2-<nowiki>#</nowiki>3-17-5, <nowiki>#</nowiki>3-11-<nowiki>#</nowiki>5, <nowiki>#</nowiki>14-<nowiki>#</nowiki>5, <nowiki>#</nowiki>3-<nowiki>#</nowiki>23, <nowiki>#</nowiki>22-<nowiki>#</nowiki>9, <nowiki>#</nowiki>3-<nowiki>#</nowiki>30, <nowiki>#</nowiki>27(IPTG), <nowiki>#</nowiki>28) | + | <html>*Transformation(<nowiki>#</nowiki><span class="part_num">2</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">11</span>-</html<html><nowiki>#</nowiki><span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">14</span>-</html<html><nowiki>#</nowiki><span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-</html<html><nowiki>#</nowiki><span class="part_num">23</span></html<html>, <nowiki>#</nowiki><span class="part_num">22</span>-</html<html><nowiki>#</nowiki><span class="part_num">9</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-</html<html><nowiki>#</nowiki><span class="part_num">30</span></html<html>, <nowiki>#</nowiki><span class="part_num">27</span></html<html>(IPTG), <nowiki>#</nowiki><span class="part_num">28</span></html) |
<html></div></html> | <html></div></html> | ||
<html><div class="labDay"></html> | <html><div class="labDay"></html> | ||
==='11/08/02(Tue)=== | ==='11/08/02(Tue)=== | ||
- | *Colony PCR(<nowiki>#</nowiki>2-<nowiki>#</nowiki>3-17-5, <nowiki>#</nowiki>3-11-<nowiki>#</nowiki>5, <nowiki>#</nowiki>14-<nowiki>#</nowiki>5, <nowiki>#</nowiki>3-<nowiki>#</nowiki>23, <nowiki>#</nowiki>22-<nowiki>#</nowiki>9) | + | <html>*Colony PCR(<nowiki>#</nowiki><span class="part_num">2</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">11</span>-</html<html><nowiki>#</nowiki><span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">14</span>-</html<html><nowiki>#</nowiki><span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-</html<html><nowiki>#</nowiki><span class="part_num">23</span></html<html>, <nowiki>#</nowiki><span class="part_num">22</span>-</html<html><nowiki>#</nowiki><span class="part_num">9</span></html) |
- | *Cloning(PCR)(<nowiki>#</nowiki>27, <nowiki>#</nowiki>28) | + | <html>*Cloning(PCR)(<nowiki>#</nowiki><span class="part_num">27</span></html<html>, <nowiki>#</nowiki><span class="part_num">28</span></html) |
*Gel extraction | *Gel extraction | ||
- | *PCR_2nd(lexA, cheZ, <nowiki>#</nowiki>27, <nowiki>#</nowiki>28) | + | <html>*PCR_2nd(lexA, cheZ, <nowiki>#</nowiki><span class="part_num">27</span></html<html>, <nowiki>#</nowiki><span class="part_num">28</span></html) |
- | *Digest (<nowiki>#</nowiki>30 again) | + | <html>*Digest (<nowiki>#</nowiki><span class="part_num">30</span></html again) |
*Making competent cell(cheZ-, Wild Type) | *Making competent cell(cheZ-, Wild Type) | ||
*Miniprep | *Miniprep | ||
Line 474: | Line 474: | ||
<html><div class="labDay"></html> | <html><div class="labDay"></html> | ||
==='11/08/04(Thu)=== | ==='11/08/04(Thu)=== | ||
- | *Electrophoresis(product of ligation <nowiki>#</nowiki>2-3-17-5(2), <nowiki>#</nowiki>3-11-5(1,2), <nowiki>#</nowiki>14-5(2), <nowiki>#</nowiki>22-9(1,2,3)) | + | <html>*Electrophoresis(product of ligation <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>(2), <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html<html>(1,2), <nowiki>#</nowiki><span class="part_num">14</span>-<span class="part_num">5</span></html<html>(2), <nowiki>#</nowiki><span class="part_num">22</span>-<span class="part_num">9</span></html(1,2,3)) |
- | *Frozen stock(<nowiki>#</nowiki>2-3-17-5(2), <nowiki>#</nowiki>3-11-5(1,2), <nowiki>#</nowiki>14-5(2), <nowiki>#</nowiki>22-9(1,2)) | + | <html>*Frozen stock(<nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>(2), <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html<html>(1,2), <nowiki>#</nowiki><span class="part_num">14</span>-<span class="part_num">5</span></html<html>(2), <nowiki>#</nowiki><span class="part_num">22</span>-<span class="part_num">9</span></html(1,2)) |
*Making Gel | *Making Gel | ||
- | *Digest(<nowiki>#</nowiki>23 XPcut) | + | <html>*Digest(<nowiki>#</nowiki><span class="part_num">23</span></html XPcut) |
- | *IPTG induct(<nowiki>#</nowiki>20-9) | + | <html>*IPTG induct(<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">9</span></html) |
<html></div></html> | <html></div></html> | ||
<html><div class="labDay"></html> | <html><div class="labDay"></html> | ||
==='11/08/05(Fri)=== | ==='11/08/05(Fri)=== | ||
- | *Digest(<nowiki>#</nowiki>14-5(2) XPcut, <nowiki>#</nowiki>3-11-5(1) XPcut) | + | <html>*Digest(<nowiki>#</nowiki><span class="part_num">14</span>-<span class="part_num">5</span></html<html>(2) XPcut, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html(1) XPcut) |
- | *Cloning(PCR)(<nowiki>#</nowiki>27, <nowiki>#</nowiki>28, lexA, cheZ) | + | <html>*Cloning(PCR)(<nowiki>#</nowiki><span class="part_num">27</span></html<html>, <nowiki>#</nowiki><span class="part_num">28</span></html, lexA, cheZ) |
<html></div></html> | <html></div></html> | ||
<html><div class="labDay"></html> | <html><div class="labDay"></html> | ||
==='11/08/08(Mon)=== | ==='11/08/08(Mon)=== | ||
- | *Defrost Frozen stock, Miniprep, Nanodrop and Electrophoresis(<nowiki>#</nowiki>5, <nowiki>#</nowiki>20, <nowiki>#</nowiki>23, <nowiki>#</nowiki>30) | + | <html>*Defrost Frozen stock, Miniprep, Nanodrop and Electrophoresis(<nowiki>#</nowiki><span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span></html<html>, <nowiki>#</nowiki><span class="part_num">23</span></html<html>, <nowiki>#</nowiki><span class="part_num">30</span></html) |
*Making Gel | *Making Gel | ||
*Digest | *Digest | ||
- | **XPcut : <nowiki>#</nowiki>27, <nowiki>#</nowiki>28, cheZ, lexA, <nowiki>#</nowiki>3-11-5(1), <nowiki>#</nowiki>23,<nowiki>#</nowiki>30 | + | <html>**XPcut : <nowiki>#</nowiki><span class="part_num">27</span></html<html>, <nowiki>#</nowiki><span class="part_num">28</span></html<html>, cheZ, lexA, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html<html>(1), <nowiki>#</nowiki><span class="part_num">23</span></html<html>,<nowiki>#</nowiki><span class="part_num">30</span></html |
- | **EScut : <nowiki>#</nowiki>6 | + | <html>**EScut : <nowiki>#</nowiki><span class="part_num">6</span></html |
- | **EXcut : <nowiki>#</nowiki>7 | + | <html>**EXcut : <nowiki>#</nowiki><span class="part_num">7</span></html |
- | **SPcut : <nowiki>#</nowiki>7,<nowiki>#</nowiki>20 | + | <html>**SPcut : <nowiki>#</nowiki><span class="part_num">7</span></html<html>,<nowiki>#</nowiki><span class="part_num">20</span></html |
- | *Defrost Frozen stock(<nowiki>#</nowiki>5, <nowiki>#</nowiki>14-5(2), <nowiki>#</nowiki>3-11-5(1)) | + | <html>*Defrost Frozen stock(<nowiki>#</nowiki><span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">14</span>-<span class="part_num">5</span></html<html>(2), <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html(1)) |
<html></div></html> | <html></div></html> | ||
<html><div class="labDay"></html> | <html><div class="labDay"></html> | ||
==='11/08/09(Tue)=== | ==='11/08/09(Tue)=== | ||
- | *Miniprep, Electrophoresis and Digest(<nowiki>#</nowiki>5, <nowiki>#</nowiki>14-5(2), <nowiki>#</nowiki>3-11-5(1)) | + | <html>*Miniprep, Electrophoresis and Digest(<nowiki>#</nowiki><span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">14</span>-<span class="part_num">5</span></html<html>(2), <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html(1)) |
- | *Gel extraction and Nanodrop(<nowiki>#</nowiki>6, <nowiki>#</nowiki>27, <nowiki>#</nowiki>8, cheZ, lexA③, <nowiki>#</nowiki>3-11-5(1), <nowiki>#</nowiki>23, <nowiki>#</nowiki> | + | <html>*Gel extraction and Nanodrop(<nowiki>#</nowiki><span class="part_num">6</span></html<html>, <nowiki>#</nowiki><span class="part_num">27</span></html<html>, <nowiki>#</nowiki><span class="part_num">8</span></html<html>, cheZ, lexA③, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html<html>(1), <nowiki>#</nowiki><span class="part_num">23</span></html<html>, <nowiki>#</nowiki><span class="part_num">7</span></html<html>_EX, <nowiki>#</nowiki><span class="part_num">20</span></html<html>, <nowiki>#</nowiki><span class="part_num">7</span></html_SP) |
- | *Ligation(<nowiki>#</nowiki>27-psB1A2, <nowiki>#</nowiki>3-27, <nowiki>#</nowiki>20-28, <nowiki>#</nowiki>28-psB1A2, <nowiki>#</nowiki>3-29, <nowiki>#</nowiki>29-psB1A2, <nowiki>#</nowiki>31-psB1A2, <nowiki>#</nowiki>3-<nowiki>#</nowiki>23, <nowiki>#</nowiki>1-<nowiki>#</nowiki>3-11-5(1), <nowiki>#</nowiki>2-<nowiki>#</nowiki>3-11-5(1), <nowiki>#</nowiki>24-<nowiki>#</nowiki>3-11-5(1), <nowiki>#</nowiki>3-<nowiki>#</nowiki>30) | + | <html>*Ligation(<nowiki>#</nowiki><span class="part_num">27</span>-</html<html>psB1A2, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">28</span></html<html>, <nowiki>#</nowiki><span class="part_num">28</span>-</html<html>psB1A2, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">29</span></html<html>, <nowiki>#</nowiki><span class="part_num">29</span>-</html<html>psB1A2, <nowiki>#</nowiki><span class="part_num">31</span>-</html<html>psB1A2, <nowiki>#</nowiki><span class="part_num">3</span>-</html<html><nowiki>#</nowiki><span class="part_num">23</span></html<html>, <nowiki>#</nowiki><span class="part_num">1</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html<html>(1), <nowiki>#</nowiki><span class="part_num">2</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html<html>(1), <nowiki>#</nowiki><span class="part_num">24</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html<html>(1), <nowiki>#</nowiki><span class="part_num">3</span>-</html<html><nowiki>#</nowiki><span class="part_num">30</span></html) |
*Making LB plate | *Making LB plate | ||
<html></div></html> | <html></div></html> | ||
Line 509: | Line 509: | ||
<html><div class="labDay"></html> | <html><div class="labDay"></html> | ||
==='11/08/10(Wed)=== | ==='11/08/10(Wed)=== | ||
- | *Colony PCR(<nowiki>#</nowiki>27-pSB1A2, <nowiki>#</nowiki>3-27, <nowiki>#</nowiki>20-28, <nowiki>#</nowiki>28-psB1A2, <nowiki>#</nowiki>3-29, <nowiki>#</nowiki>29-psB1A2, <nowiki>#</nowiki>31-pSB1A2, <nowiki>#</nowiki>3-<nowiki>#</nowiki>23, <nowiki>#</nowiki>1-<nowiki>#</nowiki>3-11-5(1), <nowiki>#</nowiki>2-<nowiki>#</nowiki>3-11-5(1), <nowiki>#</nowiki>24-<nowiki>#</nowiki>3-11-5(1), <nowiki>#</nowiki>3-<nowiki>#</nowiki> | + | <html>*Colony PCR(<nowiki>#</nowiki><span class="part_num">27</span>-</html<html>pSB1A2, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">28</span></html<html>, <nowiki>#</nowiki><span class="part_num">28</span>-</html<html>psB1A2, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">29</span></html<html>, <nowiki>#</nowiki><span class="part_num">29</span>-</html<html>psB1A2, <nowiki>#</nowiki><span class="part_num">31</span>-</html<html>pSB1A2, <nowiki>#</nowiki><span class="part_num">3</span>-</html<html><nowiki>#</nowiki><span class="part_num">23</span></html<html>, <nowiki>#</nowiki><span class="part_num">1</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html<html>(1), <nowiki>#</nowiki><span class="part_num">2</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html<html>(1), <nowiki>#</nowiki><span class="part_num">24</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html<html>(1), <nowiki>#</nowiki><span class="part_num">3</span>-</html<html><nowiki>#</nowiki><span class="part_num">30</span></html)) |
*Cloning(lexA, cheZ) | *Cloning(lexA, cheZ) | ||
*Digest | *Digest | ||
- | **EScut : <nowiki>#</nowiki>6 | + | <html>**EScut : <nowiki>#</nowiki><span class="part_num">6</span></html |
- | **EXcut : <nowiki>#</nowiki>7 | + | <html>**EXcut : <nowiki>#</nowiki><span class="part_num">7</span></html |
- | **SPcut : <nowiki>#</nowiki>1, <nowiki>#</nowiki>2, <nowiki>#</nowiki>3, <nowiki>#</nowiki>7, <nowiki>#</nowiki>20 | + | <html>**SPcut : <nowiki>#</nowiki><span class="part_num">1</span></html<html>, <nowiki>#</nowiki><span class="part_num">2</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span></html<html>, <nowiki>#</nowiki><span class="part_num">7</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span></html |
- | **XPcut : <nowiki>#</nowiki>23 | + | <html>**XPcut : <nowiki>#</nowiki><span class="part_num">23</span></html |
*Defrost Primer | *Defrost Primer | ||
<html></div></html> | <html></div></html> | ||
Line 521: | Line 521: | ||
<html><div class="labDay"></html> | <html><div class="labDay"></html> | ||
==='11/08/11(Thu)=== | ==='11/08/11(Thu)=== | ||
- | *Gel extraction(<nowiki>#</nowiki>30, <nowiki>#</nowiki>14-5(insert,vector), <nowiki>#</nowiki>5, <nowiki>#</nowiki>3-11-5, cheZ, lexA) | + | <html>*Gel extraction(<nowiki>#</nowiki><span class="part_num">30</span></html<html>, <nowiki>#</nowiki><span class="part_num">14</span>-<span class="part_num">5</span></html<html>(insert,vector), <nowiki>#</nowiki><span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html, cheZ, lexA) |
*Cloning(sulAp, uvrAp) | *Cloning(sulAp, uvrAp) | ||
- | *Miniprep(<nowiki>#</nowiki>3, <nowiki>#</nowiki>20-28, <nowiki>#</nowiki>31, <nowiki>#</nowiki>24-3-11-5, <nowiki>#</nowiki>3-30) | + | <html>*Miniprep(<nowiki>#</nowiki><span class="part_num">3</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">28</span></html<html>, <nowiki>#</nowiki><span class="part_num">31</span></html<html>, <nowiki>#</nowiki><span class="part_num">24</span>-<span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">30</span></html) |
<html></div></html> | <html></div></html> | ||
<html><div class="labDay"></html> | <html><div class="labDay"></html> | ||
==='11/08/12(Fri)=== | ==='11/08/12(Fri)=== | ||
- | *Colony PCR(<nowiki>#</nowiki>3-14-5(2), <nowiki>#</nowiki>6-5, <nowiki>#</nowiki>3-23) | + | <html>*Colony PCR(<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>(2), <nowiki>#</nowiki><span class="part_num">6</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">23</span></html) |
*Cloning(nested-PCR)(uvrAp, sulAp) | *Cloning(nested-PCR)(uvrAp, sulAp) | ||
*Check Electrophoresis | *Check Electrophoresis | ||
- | **8/11 PCR product:<nowiki>#</nowiki>27, <nowiki>#</nowiki>28 | + | <html>**8/11 PCR product:<nowiki>#</nowiki><span class="part_num">27</span></html<html>, <nowiki>#</nowiki><span class="part_num">28</span></html |
- | **Miniprep product:<nowiki>#</nowiki>3-14-5(2), <nowiki>#</nowiki>5 | + | <html>**Miniprep product:<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>(2), <nowiki>#</nowiki><span class="part_num">5</span></html |
- | *Digest(<nowiki>#</nowiki>5 EXcut, <nowiki>#</nowiki>14 EScut) | + | <html>*Digest(<nowiki>#</nowiki><span class="part_num">5</span></html<html> EXcut, <nowiki>#</nowiki><span class="part_num">14</span></html EScut) |
*Gel extraction | *Gel extraction | ||
- | **8/11 digest product : <nowiki>#</nowiki>5, <nowiki>#</nowiki>14-5, <nowiki>#</nowiki>3-30, cheZ, lexA | + | <html>**8/11 digest product : <nowiki>#</nowiki><span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">30</span></html, cheZ, lexA |
- | **8/11 PCR product : <nowiki>#</nowiki>27, <nowiki>#</nowiki>28 | + | <html>**8/11 PCR product : <nowiki>#</nowiki><span class="part_num">27</span></html<html>, <nowiki>#</nowiki><span class="part_num">28</span></html |
**8/12 nested-PCR product : sulAp, uvrAp | **8/12 nested-PCR product : sulAp, uvrAp | ||
- | *Colony PCR (re) (<nowiki>#</nowiki>13-14-5) | + | <html>*Colony PCR (re) (<nowiki>#</nowiki><span class="part_num">13</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html) |
- | *Miniprep(ligation product : <nowiki>#</nowiki>6-5, <nowiki>#</nowiki>3-23) | + | <html>*Miniprep(ligation product : <nowiki>#</nowiki><span class="part_num">6</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">23</span></html) |
*Cloning(hotstart-PCR: uvrBp , cheZ) | *Cloning(hotstart-PCR: uvrBp , cheZ) | ||
*Digest | *Digest | ||
- | **XPcut:<nowiki>#</nowiki>27, <nowiki>#</nowiki>28, <nowiki>#</nowiki>6-5 | + | <html>**XPcut:<nowiki>#</nowiki><span class="part_num">27</span></html<html>, <nowiki>#</nowiki><span class="part_num">28</span></html<html>, <nowiki>#</nowiki><span class="part_num">6</span>-<span class="part_num">5</span></html |
- | **EScut: sulAp, uvrAp, <nowiki>#</nowiki>3-23 | + | <html>**EScut: sulAp, uvrAp, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">23</span></html |
<html></div></html> | <html></div></html> | ||
<html><div class="labDay"></html> | <html><div class="labDay"></html> | ||
==='11/08/15(Mon)=== | ==='11/08/15(Mon)=== | ||
- | *Gel extraction(from previous digest products(8/12) : <nowiki>#</nowiki>27, <nowiki>#</nowiki>28, <nowiki>#</nowiki>33, <nowiki>#</nowiki>34, <nowiki>#</nowiki>4, <nowiki>#</nowiki>3-23) | + | <html>*Gel extraction(from previous digest products(8/12) : <nowiki>#</nowiki><span class="part_num">27</span></html<html>, <nowiki>#</nowiki><span class="part_num">28</span></html<html>, <nowiki>#</nowiki><span class="part_num">33</span></html<html>, <nowiki>#</nowiki><span class="part_num">34</span></html<html>, <nowiki>#</nowiki><span class="part_num">4</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">23</span></html) |
*Digest | *Digest | ||
**XPcut: cheZ, uvrBp(PCR products) | **XPcut: cheZ, uvrBp(PCR products) | ||
- | **EScut: <nowiki>#</nowiki>3-11-5 (to obtain pSB1AK3 EScut) | + | <html>**EScut: <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html (to obtain pSB1AK3 EScut) |
*Assay of Cell lysis construction(pLuc-Lysis device) inducted by IPTG | *Assay of Cell lysis construction(pLuc-Lysis device) inducted by IPTG | ||
*Making Lysis buffer, Agarose gel | *Making Lysis buffer, Agarose gel | ||
- | *Gel extraction(from digest products XPcut: cheZ, uvrBp(PCR products) EScut: <nowiki>#</nowiki>3-11-5 to obtain pSB1AK3 EScut) | + | <html>*Gel extraction(from digest products XPcut: cheZ, uvrBp(PCR products) EScut: <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html to obtain pSB1AK3 EScut) |
- | *Ligation(<nowiki>#</nowiki>3-<nowiki>#</nowiki>14-5, <nowiki>#</nowiki>24-<nowiki>#</nowiki>3-17-5, <nowiki>#</nowiki>24-<nowiki>#</nowiki>3-11-5, <nowiki>#</nowiki>20-<nowiki>#</nowiki>28, <nowiki>#</nowiki>3-<nowiki>#</nowiki>27, <nowiki>#</nowiki>3-<nowiki>#</nowiki>29, <nowiki>#</nowiki>3-23-<nowiki>#</nowiki>5, <nowiki>#</nowiki>33-pSB1AK3, <nowiki>#</nowiki>34--pSB1AK3, <nowiki>#</nowiki>35-- | + | <html>*Ligation(<nowiki>#</nowiki><span class="part_num">3</span>-</html<html><nowiki>#</nowiki><span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">24</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">24</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span>-</html<html><nowiki>#</nowiki><span class="part_num">28</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-</html<html><nowiki>#</nowiki><span class="part_num">27</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-</html<html><nowiki>#</nowiki><span class="part_num">29</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">23</span>-</html<html><nowiki>#</nowiki><span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">33</span>-</html<html>pSB1AK3, <nowiki>#</nowiki><span class="part_num">34</span>--</html<html>pSB1AK3, <nowiki>#</nowiki><span class="part_num">35</span>--</htmlpSB1AK3) |
- | *Transformation(ligation products:WT, <nowiki>#</nowiki>2-9:cheZ-, <nowiki>#</nowiki>14, <nowiki>#</nowiki>17) -> 37 incubation | + | <html>*Transformation(ligation products:WT, <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">9</span></html<html>:cheZ-, <nowiki>#</nowiki><span class="part_num">14</span></html<html>, <nowiki>#</nowiki><span class="part_num">17</span></html) -> 37 incubation |
<html></div></html> | <html></div></html> | ||
<html><div class="labDay"></html> | <html><div class="labDay"></html> | ||
==='11/08/16(Tue)=== | ==='11/08/16(Tue)=== | ||
- | *Colony PCR(<nowiki>#</nowiki>3-<nowiki>#</nowiki>14-5, <nowiki>#</nowiki>24-<nowiki>#</nowiki>3-17-5, <nowiki>#</nowiki>20-<nowiki>#</nowiki>28, <nowiki>#</nowiki>3-<nowiki>#</nowiki>27, <nowiki>#</nowiki>3-<nowiki>#</nowiki>29, <nowiki>#</nowiki>3-23-<nowiki>#</nowiki>5) | + | <html>*Colony PCR(<nowiki>#</nowiki><span class="part_num">3</span>-</html<html><nowiki>#</nowiki><span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">24</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span>-</html<html><nowiki>#</nowiki><span class="part_num">28</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-</html<html><nowiki>#</nowiki><span class="part_num">27</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-</html<html><nowiki>#</nowiki><span class="part_num">29</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">23</span>-</html<html><nowiki>#</nowiki><span class="part_num">5</span></html) |
- | *Culture (<nowiki>#</nowiki>20-<nowiki>#</nowiki>28, <nowiki>#</nowiki>5, <nowiki>#</nowiki>14, <nowiki>#</nowiki>17, <nowiki>#</nowiki>2-9, <nowiki>#</nowiki>2-4, <nowiki>#</nowiki>2-3-17-5, <nowiki>#</nowiki>1, <nowiki>#</nowiki>2) | + | <html>*Culture (<nowiki>#</nowiki><span class="part_num">20</span>-</html<html><nowiki>#</nowiki><span class="part_num">28</span></html<html>, <nowiki>#</nowiki><span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">14</span></html<html>, <nowiki>#</nowiki><span class="part_num">17</span></html<html>, <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">9</span></html<html>, <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">4</span></html<html>, <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">1</span></html<html>, <nowiki>#</nowiki><span class="part_num">2</span></html) |
- | *Incubation (<nowiki>#</nowiki>24-<nowiki>#</nowiki>3-11-5, <nowiki>#</nowiki>33-pSB1AK3, <nowiki>#</nowiki>34-pSB1AK3, <nowiki>#</nowiki>35- | + | <html>*Incubation (<nowiki>#</nowiki><span class="part_num">24</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">33</span>-</html<html>pSB1AK3, <nowiki>#</nowiki><span class="part_num">34</span>-</html<html>pSB1AK3, <nowiki>#</nowiki><span class="part_num">35</span>-</htmlpSB1AK3) |
*Colony PCR(additional)(previously incubated ligation products: 3, 8, 10) | *Colony PCR(additional)(previously incubated ligation products: 3, 8, 10) | ||
*hotstart PCR(sulAp, uvrAp, uvrBp) | *hotstart PCR(sulAp, uvrAp, uvrBp) | ||
- | *Digest(SPcut: <nowiki>#</nowiki>3, Ecut:<nowiki>#</nowiki>3(control)) go to 37 incubation | + | <html>*Digest(SPcut: <nowiki>#</nowiki><span class="part_num">3</span></html<html>, Ecut:<nowiki>#</nowiki><span class="part_num">3</span></html(control)) go to 37 incubation |
- | *Ligation retry(<nowiki>#</nowiki>3-<nowiki>#</nowiki>14-5, <nowiki>#</nowiki>3-<nowiki>#</nowiki>27, <nowiki>#</nowiki>3-<nowiki>#</nowiki>29, Negative control :<nowiki>#</nowiki>3) | + | <html>*Ligation retry(<nowiki>#</nowiki><span class="part_num">3</span>-</html<html><nowiki>#</nowiki><span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-</html<html><nowiki>#</nowiki><span class="part_num">27</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-</html<html><nowiki>#</nowiki><span class="part_num">29</span></html<html>, Negative control :<nowiki>#</nowiki><span class="part_num">3</span></html) |
- | *Frozen stock(<nowiki>#</nowiki>14, <nowiki>#</nowiki>17) | + | <html>*Frozen stock(<nowiki>#</nowiki><span class="part_num">14</span></html<html>, <nowiki>#</nowiki><span class="part_num">17</span></html) |
- | *Culture test(<nowiki>#</nowiki>14 on 0.3%Agar.(km)) | + | <html>*Culture test(<nowiki>#</nowiki><span class="part_num">14</span></html on 0.3%Agar.(km)) |
*Ethanol precipitation: 29.9ng/ul * 1000ul | *Ethanol precipitation: 29.9ng/ul * 1000ul | ||
- | *Miniprep(Ligation products : <nowiki>#</nowiki>2-3-17-5, <nowiki>#</nowiki>14, <nowiki>#</nowiki>17, <nowiki>#</nowiki>1, <nowiki>#</nowiki>2) | + | <html>*Miniprep(Ligation products : <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">14</span></html<html>, <nowiki>#</nowiki><span class="part_num">17</span></html<html>, <nowiki>#</nowiki><span class="part_num">1</span></html<html>, <nowiki>#</nowiki><span class="part_num">2</span></html) |
*Electrophoresis(Colony PCR products: 3, 8, 10) | *Electrophoresis(Colony PCR products: 3, 8, 10) | ||
- | *Waking from frozen stock(<nowiki>#</nowiki>3, CheZ-, WT) | + | <html>*Waking from frozen stock(<nowiki>#</nowiki><span class="part_num">3</span></html, CheZ-, WT) |
<html></div></html> | <html></div></html> | ||
Line 584: | Line 584: | ||
*Making Competent Cell, SOB medium | *Making Competent Cell, SOB medium | ||
*Ethanol precipitation(WT: 40ng/ul) | *Ethanol precipitation(WT: 40ng/ul) | ||
- | *Culture from master-plate(<nowiki>#</nowiki>6-5, <nowiki>#</nowiki>20-28, <nowiki>#</nowiki>3-27, <nowiki>#</nowiki>33, <nowiki>#</nowiki>24-3-11-5 <nowiki>#</nowiki>24-3-17-5) -> Miniprep | + | <html>*Culture from master-plate(<nowiki>#</nowiki><span class="part_num">6</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">28</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span></html<html>, <nowiki>#</nowiki><span class="part_num">33</span></html<html>, <nowiki>#</nowiki><span class="part_num">24</span>-<span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html<html> <nowiki>#</nowiki><span class="part_num">24</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html) -> Miniprep |
*Assay(IPTG induced cell lysis device | *Assay(IPTG induced cell lysis device | ||
- | *Gel extraction(SPcut:<nowiki>#</nowiki>3) | + | <html>*Gel extraction(SPcut:<nowiki>#</nowiki><span class="part_num">3</span></html) |
- | *Culture from Frozen stock(<nowiki>#</nowiki>1, <nowiki>#</nowiki>2, <nowiki>#</nowiki>2-3-17-5) | + | <html>*Culture from Frozen stock(<nowiki>#</nowiki><span class="part_num">1</span></html<html>, <nowiki>#</nowiki><span class="part_num">2</span></html<html>, <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html) |
*Electrophresis check(Loading only DNA size markers) | *Electrophresis check(Loading only DNA size markers) | ||
- | *Miniprep(<nowiki>#</nowiki>3, <nowiki>#</nowiki>6-5, <nowiki>#</nowiki>20-28, <nowiki>#</nowiki>3-27, <nowiki>#</nowiki>33, <nowiki>#</nowiki>24-3-11-5 <nowiki>#</nowiki>24-3-17-5) | + | <html>*Miniprep(<nowiki>#</nowiki><span class="part_num">3</span></html<html>, <nowiki>#</nowiki><span class="part_num">6</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">28</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span></html<html>, <nowiki>#</nowiki><span class="part_num">33</span></html<html>, <nowiki>#</nowiki><span class="part_num">24</span>-<span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html<html> <nowiki>#</nowiki><span class="part_num">24</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html) |
<html></div></html> | <html></div></html> | ||
<html><div class="labDay"></html> | <html><div class="labDay"></html> | ||
==='11/08/18(Thu)=== | ==='11/08/18(Thu)=== | ||
- | *Digest(8/17<nowiki>#</nowiki>3, <nowiki>#</nowiki>33 SPcut, <nowiki>#</nowiki>14-5 XPcut, <nowiki>#</nowiki>33 Ecut, <nowiki>#</nowiki>3-27,<nowiki>#</nowiki>3-30,<nowiki>#</nowiki>20-28 EScut, pSB1K3 EPcut) | + | <html>*Digest(8/17<nowiki>#</nowiki><span class="part_num">3</span></html<html>, <nowiki>#</nowiki><span class="part_num">33</span></html<html> SPcut, <nowiki>#</nowiki><span class="part_num">14</span>-<span class="part_num">5</span></html<html> XPcut, <nowiki>#</nowiki><span class="part_num">33</span></html<html> Ecut, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span></html<html>,<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">30</span></html<html>,<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">28</span></html EScut, pSB1K3 EPcut) |
*Hotstart-PCR (Change conditions a little) | *Hotstart-PCR (Change conditions a little) | ||
**From Genome : uvrBp, cheZ | **From Genome : uvrBp, cheZ | ||
**From nested-region : uvrA | **From nested-region : uvrA | ||
- | *Culture from 0809 master-plate ⑪ (<nowiki>#</nowiki>2-3-11-5) → Miniprep. | + | <html>*Culture from 0809 master-plate ⑪ (<nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html) → Miniprep. |
*Making LB plate & tube with various agarose conc. (plate: 0.5, 0.7, 0.9%×2 each, tube: 0.5,1.0,1.5,2.0,3.0%×2 each)(selection: Kanamycin) | *Making LB plate & tube with various agarose conc. (plate: 0.5, 0.7, 0.9%×2 each, tube: 0.5,1.0,1.5,2.0,3.0%×2 each)(selection: Kanamycin) | ||
- | *Gel extraction(8/17<nowiki>#</nowiki> | + | <html>*Gel extraction(8/17<nowiki>#</nowiki><span class="part_num">3</span></html<html>_SP,<nowiki>#</nowiki><span class="part_num">33</span></html<html>_SP, <nowiki>#</nowiki><span class="part_num">14</span>-<span class="part_num">5</span></html<html>_XP, <nowiki>#</nowiki><span class="part_num">33</span></html<html>_E, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span></html_ES, pSB1K3 _EP) |
- | *Miniprep(<nowiki>#</nowiki>1, <nowiki>#</nowiki>2, <nowiki>#</nowiki>2-3-11-5, <nowiki>#</nowiki>2-3-17-5) | + | <html>*Miniprep(<nowiki>#</nowiki><span class="part_num">1</span></html<html>, <nowiki>#</nowiki><span class="part_num">2</span></html<html>, <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html) |
- | *Digest(<nowiki>#</nowiki>1,<nowiki>#</nowiki>2 SPcut, <nowiki>#</nowiki>2-3-17-5 XPcut, <nowiki>#</nowiki>2-3-11-5 SPcut(check), EPcut(selection), <nowiki>#</nowiki>3-30, <nowiki>#</nowiki>20-28 EScut, 0817 Gel extracted PCR product (uvrBp) EScut, 0818PCR products (uvrAp, uvrBp, cheZ) ES&XPcut) | + | <html>*Digest(<nowiki>#</nowiki><span class="part_num">1</span></html<html>,<nowiki>#</nowiki><span class="part_num">2</span></html<html> SPcut, <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html> XPcut, <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html<html> SPcut(check), EPcut(selection), <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">30</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">28</span></html EScut, 0817 Gel extracted PCR product (uvrBp) EScut, 0818PCR products (uvrAp, uvrBp, cheZ) ES&XPcut) |
- | *Ligation (8/17<nowiki>#</nowiki>3-<nowiki>#</nowiki>14-5, 8/17<nowiki>#</nowiki>3-8/15<nowiki>#</nowiki>29, <nowiki>#</nowiki>33-<nowiki>#</nowiki>3-11-5, 8/15<nowiki>#</nowiki>34-pSB1AK3, <nowiki>#</nowiki>3-27-<nowiki>#</nowiki>5, <nowiki>#</nowiki>20-28-pSB1AK3, <nowiki>#</nowiki>28- | + | <html>*Ligation (8/17<nowiki>#</nowiki><span class="part_num">3</span>-</html<html><nowiki>#</nowiki><span class="part_num">14</span>-<span class="part_num">5</span></html<html>, 8/17<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">8</span></html<html>/15<nowiki>#</nowiki><span class="part_num">29</span></html<html>, <nowiki>#</nowiki><span class="part_num">33</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html<html>, 8/15<nowiki>#</nowiki><span class="part_num">34</span>-</html<html>pSB1AK3, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-</html<html><nowiki>#</nowiki><span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">28</span>-</html<html>pSB1AK3, <nowiki>#</nowiki><span class="part_num">28</span>-</htmlpSB1AK3) |
*Culture for frozen stock in eppendolf tube | *Culture for frozen stock in eppendolf tube | ||
<html></div></html> | <html></div></html> | ||
Line 609: | Line 609: | ||
<html><div class="labDay"></html> | <html><div class="labDay"></html> | ||
==='11/08/19(Fri)=== | ==='11/08/19(Fri)=== | ||
- | *ColonyPCR(from ligation products)(<nowiki>#</nowiki>3-14-5, <nowiki>#</nowiki>3-29, <nowiki>#</nowiki>33-3-11-5, <nowiki>#</nowiki>34-pSB1AK3, <nowiki>#</nowiki>3-27-5) | + | <html>*ColonyPCR(from ligation products)(<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">29</span></html<html>, <nowiki>#</nowiki><span class="part_num">33</span>-<span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">34</span>-</html<html>pSB1AK3, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-<span class="part_num">5</span></html) |
- | *Gel extraction(08/18's digest products:<nowiki>#</nowiki> | + | <html>*Gel extraction(08/18's digest products:<nowiki>#</nowiki><span class="part_num">1</span></html<html>_SP, <nowiki>#</nowiki><span class="part_num">2</span></html<html>_SP, <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html<html>_SP, <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>_XP, cheZ_XP, <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html_EP, 8/18uvrBp_ES, 8/17uvrBp_ES, uvrAp_ES) |
- | *Colony PCR retry(<nowiki>#</nowiki>3-29, <nowiki>#</nowiki>34- | + | <html>*Colony PCR retry(<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">29</span></html<html>, <nowiki>#</nowiki><span class="part_num">34</span>-</htmlpSB1AK3) |
*Frozen Stock | *Frozen Stock | ||
*Check the list of frozen stock | *Check the list of frozen stock | ||
*Assay of recAp from biobrick parts using RFP construct & transilluminator | *Assay of recAp from biobrick parts using RFP construct & transilluminator | ||
- | *Electrophoresis(<nowiki>#</nowiki>3, <nowiki>#</nowiki>3-27, <nowiki>#</nowiki>3-30, <nowiki>#</nowiki>6-5, <nowiki>#</nowiki>7, <nowiki>#</nowiki>20-28, <nowiki>#</nowiki>24-3-11-5, <nowiki>#</nowiki>24-3-17-5, <nowiki>#</nowiki>33) | + | <html>*Electrophoresis(<nowiki>#</nowiki><span class="part_num">3</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">30</span></html<html>, <nowiki>#</nowiki><span class="part_num">6</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">7</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">28</span></html<html>, <nowiki>#</nowiki><span class="part_num">24</span>-<span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">24</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">33</span></html) |
<html></div></html> | <html></div></html> | ||
Line 622: | Line 622: | ||
*Making SOB medium | *Making SOB medium | ||
*Culture for Miniprep | *Culture for Miniprep | ||
- | **From frozen stock(<nowiki>#</nowiki>1, <nowiki>#</nowiki>2, <nowiki>#</nowiki>7, <nowiki>#</nowiki>2-3-17-5(2), <nowiki>#</nowiki>3-30) | + | <html>**From frozen stock(<nowiki>#</nowiki><span class="part_num">1</span></html<html>, <nowiki>#</nowiki><span class="part_num">2</span></html<html>, <nowiki>#</nowiki><span class="part_num">7</span></html<html>, <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>(2), <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">30</span></html) |
- | **From master plate(<nowiki>#</nowiki>3-14-5, <nowiki>#</nowiki>33-3-11-5, <nowiki>#</nowiki>34-pSB1AK3, <nowiki>#</nowiki>3-27-5) | + | <html>**From master plate(<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">33</span>-<span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">34</span>-</html<html>pSB1AK3, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-<span class="part_num">5</span></html) |
**From master plate retry( at 13:50 OD600=0) | **From master plate retry( at 13:50 OD600=0) | ||
**From ligation products (for mistake above) | **From ligation products (for mistake above) | ||
*Miniprep, Nanodrop and Electrophoresis | *Miniprep, Nanodrop and Electrophoresis | ||
- | **From frozen stock(<nowiki>#</nowiki>1, <nowiki>#</nowiki>2, <nowiki>#</nowiki>2-3-17-5(2), <nowiki>#</nowiki>3-30) <nowiki>#</nowiki>7 was a little bit weak | + | <html>**From frozen stock(<nowiki>#</nowiki><span class="part_num">1</span></html<html>, <nowiki>#</nowiki><span class="part_num">2</span></html<html>, <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>(2), <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">30</span></html<html>) <nowiki>#</nowiki><span class="part_num">7</span></html was a little bit weak |
- | **From ligation products(<nowiki>#</nowiki>7, <nowiki>#</nowiki>3-14-5, <nowiki>#</nowiki>3-27-5, <nowiki>#</nowiki>34, <nowiki>#</nowiki>33-3-11-5) | + | <html>**From ligation products(<nowiki>#</nowiki><span class="part_num">7</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">34</span></html<html>, <nowiki>#</nowiki><span class="part_num">33</span>-<span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html) |
*Digest | *Digest | ||
- | **From Frozen Stock (<nowiki>#</nowiki> | + | <html>**From Frozen Stock (<nowiki>#</nowiki><span class="part_num">7</span></html<html>_EX, <nowiki>#</nowiki><span class="part_num">30</span></html<html>_XP, <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>_XP, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">30</span></html_ES) |
- | **From Master plate(<nowiki>#</nowiki>3-14- | + | <html>**From Master plate(<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>_XP, <nowiki>#</nowiki><span class="part_num">34</span>-</html<html>pSB1AK3_SP, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-<span class="part_num">5</span></html_XP) |
- | *Sulvage <nowiki>#</nowiki>33 using protocol of transformation | + | <html>*Sulvage <nowiki>#</nowiki><span class="part_num">33</span></html using protocol of transformation |
*Culture for Frozen stock | *Culture for Frozen stock | ||
- | **From Master plate(<nowiki>#</nowiki>24-3-17-5, <nowiki>#</nowiki>14-5), 700ul, in eppendolf tube | + | <html>**From Master plate(<nowiki>#</nowiki><span class="part_num">24</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">14</span>-<span class="part_num">5</span></html), 700ul, in eppendolf tube |
<html></div></html> | <html></div></html> | ||
Line 640: | Line 640: | ||
==='11/08/23(Tue)=== | ==='11/08/23(Tue)=== | ||
*Gel extraction | *Gel extraction | ||
- | **from O.N. digest products(<nowiki>#</nowiki> | + | <html>**from O.N. digest products(<nowiki>#</nowiki><span class="part_num">7</span></html<html>_EX, <nowiki>#</nowiki><span class="part_num">30</span></html<html>_XP, <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>_XP, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">30</span></html<html>_ES, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>_XP, <nowiki>#</nowiki><span class="part_num">34</span>-</html<html>pSB1AK3_SP, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-<span class="part_num">5</span></html_XP) |
*Frozen stock | *Frozen stock | ||
- | **From O.N. culture in eppendolf tube 700ul(<nowiki>#</nowiki>24-3-17-5, <nowiki>#</nowiki>14-5) | + | <html>**From O.N. culture in eppendolf tube 700ul(<nowiki>#</nowiki><span class="part_num">24</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">14</span>-<span class="part_num">5</span></html) |
- | **From O.N. culture(for Miniprep)(<nowiki>#</nowiki>34, <nowiki>#</nowiki>3-27-5, <nowiki>#</nowiki>33-3-11-5) | + | <html>**From O.N. culture(for Miniprep)(<nowiki>#</nowiki><span class="part_num">34</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">33</span>-<span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html) |
*Miniprep | *Miniprep | ||
- | **retry from master plate <nowiki>#</nowiki>3-14-5(278.1 ng/ul), <nowiki>#</nowiki>33-3-11-5(188.9ng/ul), <nowiki>#</nowiki>34-pSB1AK3(89.6ng/ul), <nowiki>#</nowiki>3-27-5(327.0 ng/ul) O.N. culture | + | <html>**retry from master plate <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>(278.1 ng/ul), <nowiki>#</nowiki><span class="part_num">33</span>-<span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html<html>(188.9ng/ul), <nowiki>#</nowiki><span class="part_num">34</span>-</html<html>pSB1AK3(89.6ng/ul), <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-<span class="part_num">5</span></html(327.0 ng/ul) O.N. culture |
- | *Digest (<nowiki>#</nowiki>14-5 XPcut, <nowiki>#</nowiki>3-27-5 Xcut, Pcut (check), <nowiki>#</nowiki>3-27-5 EScut (sulvage) ) | + | <html>*Digest (<nowiki>#</nowiki><span class="part_num">14</span>-<span class="part_num">5</span></html<html> XPcut, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-<span class="part_num">5</span></html<html> Xcut, Pcut (check), <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-<span class="part_num">5</span></html EScut (sulvage) ) |
- | *Ligation (<nowiki>#</nowiki>14-<nowiki>#</nowiki>5, <nowiki>#</nowiki>3-30-<nowiki>#</nowiki>5, <nowiki>#</nowiki>3-<nowiki>#</nowiki>30, <nowiki>#</nowiki>34-<nowiki>#</nowiki>3-11-5 <nowiki>#</nowiki>20-<nowiki>#</nowiki>28) | + | <html>*Ligation (<nowiki>#</nowiki><span class="part_num">14</span>-</html<html><nowiki>#</nowiki><span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">30</span>-</html<html><nowiki>#</nowiki><span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-</html<html><nowiki>#</nowiki><span class="part_num">30</span></html<html>, <nowiki>#</nowiki><span class="part_num">34</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html<html> <nowiki>#</nowiki><span class="part_num">20</span>-</html<html><nowiki>#</nowiki><span class="part_num">28</span></html) |
- | *<nowiki>#</nowiki>33 sulvage (isolation culture) | + | <html>*<nowiki>#</nowiki><span class="part_num">33</span></html sulvage (isolation culture) |
*Making culture(LB amp, LB) | *Making culture(LB amp, LB) | ||
<html></div></html> | <html></div></html> | ||
Line 654: | Line 654: | ||
<html><div class="labDay"></html> | <html><div class="labDay"></html> | ||
==='11/08/24(Wed)=== | ==='11/08/24(Wed)=== | ||
- | *Gel extraction & Electrophoresis(<nowiki>#</nowiki>3-27- | + | <html>*Gel extraction & Electrophoresis(<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-<span class="part_num">5</span></html<html>_ES, <nowiki>#</nowiki><span class="part_num">14</span>-<span class="part_num">5</span></html<html>_XP, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-<span class="part_num">5</span></html_X, *PCR for amplification (or cloning) -> PCR clean-up system -> digest |
- | **<nowiki>#</nowiki>27 (82.1 ng/ul, total = 30 ul) -> XP cut | + | <html>**<nowiki>#</nowiki><span class="part_num">27</span></html (82.1 ng/ul, total = 30 ul) -> XP cut |
- | **<nowiki>#</nowiki>28 (104.4 ng/ul, total = 30 ul) -> XP cut | + | <html>**<nowiki>#</nowiki><span class="part_num">28</span></html (104.4 ng/ul, total = 30 ul) -> XP cut |
*Making plate and amp stock ->4℃ | *Making plate and amp stock ->4℃ | ||
**amp 32 | **amp 32 | ||
**km 11 (km conc. = 3/4 * that it was) | **km 11 (km conc. = 3/4 * that it was) | ||
*Miniprep and Nanodrop | *Miniprep and Nanodrop | ||
- | **<nowiki>#</nowiki>33 32.1 ng/ul <- there is probability that culture volume was not enough ->transfromation | + | <html>**<nowiki>#</nowiki><span class="part_num">33</span></html 32.1 ng/ul <- there is probability that culture volume was not enough ->transfromation |
*Luciferase assay reagents prep | *Luciferase assay reagents prep | ||
**D-Luciferin Solution : 1ml*10 + 100ul*10 at -80℃ | **D-Luciferin Solution : 1ml*10 + 100ul*10 at -80℃ | ||
**Coelenterazine Solution : 100ul * 10 at -20℃ | **Coelenterazine Solution : 100ul * 10 at -20℃ | ||
**Lysis buffer : 500ul * 10 at -20℃ | **Lysis buffer : 500ul * 10 at -20℃ | ||
- | *Ligation(<nowiki>#</nowiki>3-30-<nowiki>#</nowiki>5, <nowiki>#</nowiki>3-11-5-<nowiki>#</nowiki>34, <nowiki>#</nowiki>30-<nowiki>#</nowiki>3, <nowiki>#</nowiki>28-<nowiki>#</nowiki>20, <nowiki>#</nowiki>35-pSB1AK3, <nowiki>#</nowiki>2-3-11-5-pSB1K3, <nowiki>#</nowiki>14-5-<nowiki>#</nowiki>3 and Negative control) | + | <html>*Ligation(<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">30</span>-</html<html><nowiki>#</nowiki><span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span>-</html<html><nowiki>#</nowiki><span class="part_num">34</span></html<html>, <nowiki>#</nowiki><span class="part_num">30</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span></html<html>, <nowiki>#</nowiki><span class="part_num">28</span>-</html<html><nowiki>#</nowiki><span class="part_num">20</span></html<html>, <nowiki>#</nowiki><span class="part_num">35</span>-</html<html>pSB1AK3, <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span>-</html<html>pSB1K3, <nowiki>#</nowiki><span class="part_num">14</span>-<span class="part_num">5</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span></html and Negative control) |
<html></div></html> | <html></div></html> | ||
<html><div class="labDay"></html> | <html><div class="labDay"></html> | ||
==='11/08/25(Thu)=== | ==='11/08/25(Thu)=== | ||
- | *Renilla luciferase assay (with <nowiki>#</nowiki>2-3-17-5 culture) | + | <html>*Renilla luciferase assay (with <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html culture) |
- | *Gel extraction (<nowiki>#</nowiki>27, <nowiki>#</nowiki>28 XPcut) | + | <html>*Gel extraction (<nowiki>#</nowiki><span class="part_num">27</span></html<html>, <nowiki>#</nowiki><span class="part_num">28</span></html XPcut) |
- | *Ligation (0824 retry & <nowiki>#</nowiki>20-<nowiki>#</nowiki>28, <nowiki>#</nowiki>3-<nowiki>#</nowiki>27) | + | <html>*Ligation (0824 retry & <nowiki>#</nowiki><span class="part_num">20</span>-</html<html><nowiki>#</nowiki><span class="part_num">28</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-</html<html><nowiki>#</nowiki><span class="part_num">27</span></html) |
- | *Transformation (Ligation products into WT competent cells & <nowiki>#</nowiki>14-5 miniprep product into WT cell (line-drawing spread), <nowiki>#</nowiki>33 miniprep product into ΔcheZ cell (line-drawing spread)) | + | <html>*Transformation (Ligation products into WT competent cells & <nowiki>#</nowiki><span class="part_num">14</span>-<span class="part_num">5</span></html<html> miniprep product into WT cell (line-drawing spread), <nowiki>#</nowiki><span class="part_num">33</span></html miniprep product into ΔcheZ cell (line-drawing spread)) |
- | *Digest (<nowiki>#</nowiki>14 XPcut) | + | <html>*Digest (<nowiki>#</nowiki><span class="part_num">14</span></html XPcut) |
- | *Passage(<nowiki>#</nowiki>2-3-17-5, WT, ΔcheZ, WT in eppen, ΔcheZ in eppen) | + | <html>*Passage(<nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html, WT, ΔcheZ, WT in eppen, ΔcheZ in eppen) |
<html></div></html> | <html></div></html> | ||
<html><div class="labDay"></html> | <html><div class="labDay"></html> | ||
==='11/08/26(Fri)=== | ==='11/08/26(Fri)=== | ||
- | *Renilla luciferase assay (with <nowiki>#</nowiki>2-3-17-5 culture) | + | <html>*Renilla luciferase assay (with <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html culture) |
- | *Colony PCR (<nowiki>#</nowiki>33 Miniprep transformations) | + | <html>*Colony PCR (<nowiki>#</nowiki><span class="part_num">33</span></html Miniprep transformations) |
- | *Gel extraction (<nowiki>#</nowiki> | + | <html>*Gel extraction (<nowiki>#</nowiki><span class="part_num">14</span></html_XP) |
*Ligation (retry) (using today's competent cells, 0802 ΔcheZ cells) | *Ligation (retry) (using today's competent cells, 0802 ΔcheZ cells) | ||
*Cloning (cheZ) | *Cloning (cheZ) | ||
- | *Digest (<nowiki>#</nowiki>5 EXcut, cheZ PCR products XPcut) | + | <html>*Digest (<nowiki>#</nowiki><span class="part_num">5</span></html EXcut, cheZ PCR products XPcut) |
- | *Passage in a shaker(<nowiki>#</nowiki>2-3-17-5, WT, ΔcheZ) | + | <html>*Passage in a shaker(<nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html, WT, ΔcheZ) |
*Making competent cell, LB broth | *Making competent cell, LB broth | ||
*Contamination check (0817 comp., 0802 comp., 0802 ⊿cheZ comp. spread on LB (amp) plates) | *Contamination check (0817 comp., 0802 comp., 0802 ⊿cheZ comp. spread on LB (amp) plates) | ||
Line 703: | Line 703: | ||
*Making ΔcheZ comp., LB amp plates, TB | *Making ΔcheZ comp., LB amp plates, TB | ||
*Colony PCR & master plate preparation -> Failure!! | *Colony PCR & master plate preparation -> Failure!! | ||
- | *Gel extraction (<nowiki>#</nowiki> | + | <html>*Gel extraction (<nowiki>#</nowiki><span class="part_num">29</span></html<html>_XP, <nowiki>#</nowiki><span class="part_num">5</span></html_EX) |
- | *Miniprep and frozen stocks (<nowiki>#</nowiki>33, <nowiki>#</nowiki>14-5) | + | <html>*Miniprep and frozen stocks (<nowiki>#</nowiki><span class="part_num">33</span></html<html>, <nowiki>#</nowiki><span class="part_num">14</span>-<span class="part_num">5</span></html) |
- | *Digest (<nowiki>#</nowiki>20 SPcut, <nowiki>#</nowiki>14-5 XPcut) | + | <html>*Digest (<nowiki>#</nowiki><span class="part_num">20</span></html<html> SPcut, <nowiki>#</nowiki><span class="part_num">14</span>-<span class="part_num">5</span></html XPcut) |
- | *Waking from frozen stock (WT, ⊿cheZ, <nowiki>#</nowiki>20, <nowiki>#</nowiki>14-5) | + | <html>*Waking from frozen stock (WT, ⊿cheZ, <nowiki>#</nowiki><span class="part_num">20</span></html<html>, <nowiki>#</nowiki><span class="part_num">14</span>-<span class="part_num">5</span></html) |
<html></div></html> | <html></div></html> | ||
<html><div class="labDay"></html> | <html><div class="labDay"></html> | ||
==='11/08/29(Mon)=== | ==='11/08/29(Mon)=== | ||
- | *PCR purification -> digest with XP(<nowiki>#</nowiki>27, <nowiki>#</nowiki>28) | + | <html>*PCR purification -> digest with XP(<nowiki>#</nowiki><span class="part_num">27</span></html<html>, <nowiki>#</nowiki><span class="part_num">28</span></html) |
- | *Miniprep(<nowiki>#</nowiki>20, <nowiki>#</nowiki>14-5) | + | <html>*Miniprep(<nowiki>#</nowiki><span class="part_num">20</span></html<html>, <nowiki>#</nowiki><span class="part_num">14</span>-<span class="part_num">5</span></html) |
- | *Gel extraction(<nowiki>#</nowiki>14-5, <nowiki>#</nowiki>20) | + | <html>*Gel extraction(<nowiki>#</nowiki><span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span></html) |
- | *Ligation (higher I/V ratio, into cheZ comp.)(<nowiki>#</nowiki>3-<nowiki>#</nowiki>14-5(retry), <nowiki>#</nowiki>2-3-11-5 to pSB1K3 (retry), <nowiki>#</nowiki>35-pSB1AK3, (<nowiki>#</nowiki>33,<nowiki>#</nowiki>34)-<nowiki>#</nowiki>3-17-5) | + | <html>*Ligation (higher I/V ratio, into cheZ comp.)(<nowiki>#</nowiki><span class="part_num">3</span>-</html<html><nowiki>#</nowiki><span class="part_num">14</span>-<span class="part_num">5</span></html<html>(retry), <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html<html> to pSB1K3 (retry), <nowiki>#</nowiki><span class="part_num">35</span>-</html<html>pSB1AK3, (<nowiki>#</nowiki><span class="part_num">33</span></html<html>,<nowiki>#</nowiki><span class="part_num">34</span></html<html>)-<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html) |
<html></div></html> | <html></div></html> | ||
Line 720: | Line 720: | ||
==='11/08/30(Tue)=== | ==='11/08/30(Tue)=== | ||
*Making LB amp, Aspartic acid solution (10mM), H2O2 solution (10mM) | *Making LB amp, Aspartic acid solution (10mM), H2O2 solution (10mM) | ||
- | *Gel extraction -> PCR was failed!(<nowiki>#</nowiki>27,<nowiki>#</nowiki>28) | + | <html>*Gel extraction -> PCR was failed!(<nowiki>#</nowiki><span class="part_num">27</span></html<html>,<nowiki>#</nowiki><span class="part_num">28</span></html) |
*There was trash (from PCR) below | *There was trash (from PCR) below | ||
- | *Colony PCR(<nowiki>#</nowiki>3-<nowiki>#</nowiki>14-5, <nowiki>#</nowiki>2-3-11-5 to pSB1K3, <nowiki>#</nowiki>35-pSB1AK3, (<nowiki>#</nowiki>33,<nowiki>#</nowiki>34)-<nowiki>#</nowiki>3-17-5) | + | <html>*Colony PCR(<nowiki>#</nowiki><span class="part_num">3</span>-</html<html><nowiki>#</nowiki><span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html<html> to pSB1K3, <nowiki>#</nowiki><span class="part_num">35</span>-</html<html>pSB1AK3, (<nowiki>#</nowiki><span class="part_num">33</span></html<html>,<nowiki>#</nowiki><span class="part_num">34</span></html<html>)-<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html) |
- | *PCR -> check (5uL EP -> PCR clean-up(<nowiki>#</nowiki>27,<nowiki>#</nowiki>28) | + | <html>*PCR -> check (5uL EP -> PCR clean-up(<nowiki>#</nowiki><span class="part_num">27</span></html<html>,<nowiki>#</nowiki><span class="part_num">28</span></html) |
- | *Digest(<nowiki>#</nowiki> | + | <html>*Digest(<nowiki>#</nowiki><span class="part_num">20</span></html<html>_SP, pSB1AK3_EP, <nowiki>#</nowiki><span class="part_num">3</span></html_SP) |
- | *EP for MP check(<nowiki>#</nowiki>14-5, <nowiki>#</nowiki>20) | + | <html>*EP for MP check(<nowiki>#</nowiki><span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span></html) |
- | *Ligation(<nowiki>#</nowiki>3-<nowiki>#</nowiki>29, pSB1AK3-<nowiki>#</nowiki>2-3-11-5 on Amp/Km plate, <nowiki>#</nowiki>3 (Negative control), pSB1AK3 (Negative control) on Amp/Km plate | + | <html>*Ligation(<nowiki>#</nowiki><span class="part_num">3</span>-</html<html><nowiki>#</nowiki><span class="part_num">29</span></html<html>, pSB1AK3-<nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html<html> on Amp/Km plate, <nowiki>#</nowiki><span class="part_num">3</span></html (Negative control), pSB1AK3 (Negative control) on Amp/Km plate |
- | *Transformation(<nowiki>#</nowiki>2-9 into cheZ-) -> Line-drawing plating | + | <html>*Transformation(<nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">9</span></html into cheZ-) -> Line-drawing plating |
- | *SOS stress (UV irradiation or H2O2)(<nowiki>#</nowiki>24-3-11-5, <nowiki>#</nowiki>33-3-11-5) | + | <html>*SOS stress (UV irradiation or H2O2)(<nowiki>#</nowiki><span class="part_num">24</span>-<span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">33</span>-<span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html) |
- | *culture for Miniprep from master plate(<nowiki>#</nowiki>34-3-17-5) | + | <html>*culture for Miniprep from master plate(<nowiki>#</nowiki><span class="part_num">34</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html) |
- | *Waking from frozen stock(<nowiki>#</nowiki>24-3-11-5, <nowiki>#</nowiki>33-3-11-5) | + | <html>*Waking from frozen stock(<nowiki>#</nowiki><span class="part_num">24</span>-<span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">33</span>-<span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html) |
<html></div></html> | <html></div></html> | ||
Line 738: | Line 738: | ||
*Luciferin reagent preparation | *Luciferin reagent preparation | ||
*Flask A.C. for making competent cells | *Flask A.C. for making competent cells | ||
- | *Miniprep (<nowiki>#</nowiki>34-3-17-5) | + | <html>*Miniprep (<nowiki>#</nowiki><span class="part_num">34</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html) |
- | *Gel extraction(<nowiki>#</nowiki> | + | <html>*Gel extraction(<nowiki>#</nowiki><span class="part_num">20</span></html<html>_SP, pSB1AK3_EP, <nowiki>#</nowiki><span class="part_num">3</span></html_SP) |
- | *PCR -> clean-up -> XPcut(<nowiki>#</nowiki>27, <nowiki>#</nowiki>28, <nowiki>#</nowiki>14-5, <nowiki>#</nowiki>3-30) | + | <html>*PCR -> clean-up -> XPcut(<nowiki>#</nowiki><span class="part_num">27</span></html<html>, <nowiki>#</nowiki><span class="part_num">28</span></html<html>, <nowiki>#</nowiki><span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">30</span></html) |
- | *Waking from frozen stock(<nowiki>#</nowiki>2-9 (WT), <nowiki>#</nowiki>24-3-17-5) | + | <html>*Waking from frozen stock(<nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">9</span></html<html> (WT), <nowiki>#</nowiki><span class="part_num">24</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html) |
- | *Plating from liquid culture(<nowiki>#</nowiki>2-3-17-5) | + | <html>*Plating from liquid culture(<nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html) |
- | *Ligation(<nowiki>#</nowiki>20-<nowiki>#</nowiki>3-17-5, <nowiki>#</nowiki>2-3-11-5-pSB1AK3, <nowiki>#</nowiki>3-<nowiki>#</nowiki>14, <nowiki>#</nowiki>20-<nowiki>#</nowiki>28, <nowiki>#</nowiki>3-<nowiki>#</nowiki>27, <nowiki>#</nowiki>3-<nowiki>#</nowiki>29, <nowiki>#</nowiki>35-pSB1AK3, <nowiki>#</nowiki>3-<nowiki>#</nowiki>14-5, <nowiki>#</nowiki>3-30-<nowiki>#</nowiki>5, <nowiki>#</nowiki>33-<nowiki>#</nowiki>3-17-5 & Negative control) | + | <html>*Ligation(<nowiki>#</nowiki><span class="part_num">20</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span>-</html<html>pSB1AK3, <nowiki>#</nowiki><span class="part_num">3</span>-</html<html><nowiki>#</nowiki><span class="part_num">14</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span>-</html<html><nowiki>#</nowiki><span class="part_num">28</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-</html<html><nowiki>#</nowiki><span class="part_num">27</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-</html<html><nowiki>#</nowiki><span class="part_num">29</span></html<html>, <nowiki>#</nowiki><span class="part_num">35</span>-</html<html>pSB1AK3, <nowiki>#</nowiki><span class="part_num">3</span>-</html<html><nowiki>#</nowiki><span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">30</span>-</html<html><nowiki>#</nowiki><span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">33</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html & Negative control) |
*Transformation | *Transformation | ||
- | **Plasmid isolation(<nowiki>#</nowiki>34-3-17-5(MP;1:9gradient)) | + | <html>**Plasmid isolation(<nowiki>#</nowiki><span class="part_num">34</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html(MP;1:9gradient)) |
- | **Part cloning(<nowiki>#</nowiki>36, <nowiki>#</nowiki>37) | + | <html>**Part cloning(<nowiki>#</nowiki><span class="part_num">36</span></html<html>, <nowiki>#</nowiki><span class="part_num">37</span></html) |
**Contamination check(pSB1AK3(EPcut), pSB1K3(EPcut)) | **Contamination check(pSB1AK3(EPcut), pSB1K3(EPcut)) | ||
- | **Titer check(<nowiki>#</nowiki>3-17-5(Takara comp.,1:9gradient), <nowiki>#</nowiki>2-3-11-5(ΔcheZ comp.0802, 1:9gradient), <nowiki>#</nowiki>2-3-11-5(ΔcheZ comp.0830, 1:9gradient)) | + | <html>**Titer check(<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>(Takara comp.,1:9gradient), <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html<html>(ΔcheZ comp.0802, 1:9gradient), <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html(ΔcheZ comp.0830, 1:9gradient)) |
**Ligation products | **Ligation products | ||
<html></div></html> | <html></div></html> | ||
Line 758: | Line 758: | ||
==='11/09/01(Thu)=== | ==='11/09/01(Thu)=== | ||
*Colony PCR | *Colony PCR | ||
- | **<nowiki>#</nowiki>34-3-17-5(MP), <nowiki>#</nowiki>3-14, <nowiki>#</nowiki>3-29, <nowiki>#</nowiki>35-pSB1AK3, <nowiki>#</nowiki>3-14-5, <nowiki>#</nowiki>37(from Part cloning) | + | <html>**<nowiki>#</nowiki><span class="part_num">34</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>(MP), <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">29</span></html<html>, <nowiki>#</nowiki><span class="part_num">35</span>-</html<html>pSB1AK3, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">37</span></html(from Part cloning) |
*Gel extraction | *Gel extraction | ||
- | **<nowiki>#</nowiki> | + | <html>**<nowiki>#</nowiki><span class="part_num">27</span></html<html>_XP ,<nowiki>#</nowiki><span class="part_num">28</span></html<html>_XP(0830); <nowiki>#</nowiki><span class="part_num">27</span></html<html>_XP, <nowiki>#</nowiki><span class="part_num">28</span></html<html>_XP, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">30</span></html<html>_XP -> failed!, <nowiki>#</nowiki><span class="part_num">14</span>-<span class="part_num">5</span></html_XP(0831) |
*Making medium(SOB, LB amp plate), competent cells (WT & ΔcheZ) | *Making medium(SOB, LB amp plate), competent cells (WT & ΔcheZ) | ||
- | *Miniprep(<nowiki>#</nowiki>3, <nowiki>#</nowiki>20) | + | <html>*Miniprep(<nowiki>#</nowiki><span class="part_num">3</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span></html) |
*PCR and Column purification | *PCR and Column purification | ||
- | **<nowiki>#</nowiki>3-14, <nowiki>#</nowiki>3-29, <nowiki>#</nowiki>3-14-5 (Recovery from colony PCR tubes!) | + | <html>**<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">29</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html (Recovery from colony PCR tubes!) |
*Digest | *Digest | ||
- | **<nowiki>#</nowiki>3 -> Failed (Mixed with DMSO!), <nowiki>#</nowiki>20 | + | <html>**<nowiki>#</nowiki><span class="part_num">3</span></html<html> -> Failed (Mixed with DMSO!), <nowiki>#</nowiki><span class="part_num">20</span></html |
- | **<nowiki>#</nowiki>3-14, <nowiki>#</nowiki>3-29, <nowiki>#</nowiki>3-14-5 | + | <html>**<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">29</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html |
*Ligation | *Ligation | ||
- | **<nowiki>#</nowiki>3-27, <nowiki>#</nowiki>20-<nowiki>#</nowiki>3-17-5 | + | <html>**<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html |
*Transformation | *Transformation | ||
- | **<nowiki>#</nowiki>36 into Nippon Gene comp. | + | <html>**<nowiki>#</nowiki><span class="part_num">36</span></html into Nippon Gene comp. |
**Ligation products into Takara comp. (including N.C.) | **Ligation products into Takara comp. (including N.C.) | ||
- | **Titer check(MP product <nowiki>#</nowiki>3 into 0901 WT comp., MP product <nowiki>#</nowiki>20 into 0901 ΔcheZ comp.) | + | <html>**Titer check(MP product <nowiki>#</nowiki><span class="part_num">3</span></html<html> into 0901 WT comp., MP product <nowiki>#</nowiki><span class="part_num">20</span></html into 0901 ΔcheZ comp.) |
- | *Mobility assay(<nowiki>#</nowiki>14-5 (km resistance) WT/ΔcheZ cells) | + | <html>*Mobility assay(<nowiki>#</nowiki><span class="part_num">14</span>-<span class="part_num">5</span></html (km resistance) WT/ΔcheZ cells) |
<html></div></html> | <html></div></html> | ||
Line 781: | Line 781: | ||
*Making medium and reagent(LB 120ml(0.125, 0.25, 0.5% Agar, M9 stock(20×), M9 200ml, Vitamins Solution (100×)) | *Making medium and reagent(LB 120ml(0.125, 0.25, 0.5% Agar, M9 stock(20×), M9 200ml, Vitamins Solution (100×)) | ||
*Gel extraction -> Digest products were OK but extraction was failed. | *Gel extraction -> Digest products were OK but extraction was failed. | ||
- | **<nowiki>#</nowiki> | + | <html>**<nowiki>#</nowiki><span class="part_num">20</span></html<html>_SP, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span></html<html>_XP, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>_XP, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">29</span></html_XP |
- | *Colony PCR & Master plate(<nowiki>#</nowiki>20-3-17-5, <nowiki>#</nowiki>3-27) | + | <html>*Colony PCR & Master plate(<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span></html) |
- | *Miniprep(<nowiki>#</nowiki>3, <nowiki>#</nowiki>20, <nowiki>#</nowiki>37, <nowiki>#</nowiki>3-14, <nowiki>#</nowiki>3-29, <nowiki>#</nowiki>3-14-5, <nowiki>#</nowiki>20-3-17-5, <nowiki>#</nowiki>3-27, ΔcheZ) | + | <html>*Miniprep(<nowiki>#</nowiki><span class="part_num">3</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span></html<html>, <nowiki>#</nowiki><span class="part_num">37</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">29</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span></html, ΔcheZ) |
*Hot-start PCR & Column purification -> PCR products were OK but all purified products were lost. | *Hot-start PCR & Column purification -> PCR products were OK but all purified products were lost. | ||
- | **<nowiki>#</nowiki>20-3-17-5, <nowiki>#</nowiki>3-27 (Recovery from colony PCR tubes) | + | <html>**<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span></html (Recovery from colony PCR tubes) |
- | **<nowiki>#</nowiki>3-14, <nowiki>#</nowiki>3-14-5, <nowiki>#</nowiki>3-29 (from miniprep products) | + | <html>**<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">29</span></html (from miniprep products) |
*PCR & Column purification | *PCR & Column purification | ||
- | **<nowiki>#</nowiki>20-3-17-5, <nowiki>#</nowiki>3-27, <nowiki>#</nowiki>3-14-5, <nowiki>#</nowiki>3-29 (from miniprep products) | + | <html>**<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">29</span></html (from miniprep products) |
*Digest | *Digest | ||
- | **<nowiki>#</nowiki> | + | <html>**<nowiki>#</nowiki><span class="part_num">3</span></html<html>_SP, <nowiki>#</nowiki><span class="part_num">20</span></html<html>_SP, <nowiki>#</nowiki><span class="part_num">37</span></html<html>_ES, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span></html<html>_ES, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">29</span></html<html>_ES, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html_XP, ΔcheZ_E/P (from MP products) |
- | **<nowiki>#</nowiki>20-3-17- | + | <html>**<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>_XP, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span></html<html>_ES, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>_XP, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">29</span></html_ES (from PCR products) |
<html></div></html> | <html></div></html> | ||
Line 798: | Line 798: | ||
*Gel extraction | *Gel extraction | ||
*Ligation & Transformation | *Ligation & Transformation | ||
- | **<nowiki>#</nowiki>20-<nowiki>#</nowiki>3-14-5, <nowiki>#</nowiki>2-<nowiki>#</nowiki>3-14-5, <nowiki>#</nowiki>3-27-<nowiki>#</nowiki>5 into Nippon Gene comp. (+ High Competent Broth 240ul) | + | <html>**<nowiki>#</nowiki><span class="part_num">20</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">2</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-</html<html><nowiki>#</nowiki><span class="part_num">5</span></html into Nippon Gene comp. (+ High Competent Broth 240ul) |
- | **<nowiki>#</nowiki>3-27-<nowiki>#</nowiki>5, <nowiki>#</nowiki>37-<nowiki>#</nowiki>5 into 0902 WT comp.(+ Takara SOC broth 500ul) | + | <html>**<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-</html<html><nowiki>#</nowiki><span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">37</span>-</html<html><nowiki>#</nowiki><span class="part_num">5</span></html into 0902 WT comp.(+ Takara SOC broth 500ul) |
*Assays | *Assays | ||
**Mobility assay (.5%, .25%, .125%) | **Mobility assay (.5%, .25%, .125%) | ||
**Asp assay | **Asp assay | ||
- | *Part Cloning (<nowiki>#</nowiki>36) | + | <html>*Part Cloning (<nowiki>#</nowiki><span class="part_num">36</span></html) |
<html></div></html> | <html></div></html> | ||
Line 809: | Line 809: | ||
==='11/09/04(Sun)=== | ==='11/09/04(Sun)=== | ||
*Hot-start PCR Pre-Mix (4×) preparation (Buffer + dNTPs + THUNDER Taq) | *Hot-start PCR Pre-Mix (4×) preparation (Buffer + dNTPs + THUNDER Taq) | ||
- | *Colony PCR(<nowiki>#</nowiki>20-3-14-5, <nowiki>#</nowiki>3-27-5, <nowiki>#</nowiki>3-29-5, <nowiki>#</nowiki>37-5) | + | <html>*Colony PCR(<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">37</span>-<span class="part_num">5</span></html) |
*Colony Diffusion Assays | *Colony Diffusion Assays | ||
*GFP Live-Imaging Assays | *GFP Live-Imaging Assays | ||
*Ligation & Transformation (retry) | *Ligation & Transformation (retry) | ||
- | **<nowiki>#</nowiki>2-<nowiki>#</nowiki>3-14-5, <nowiki>#</nowiki>3-27-<nowiki>#</nowiki>5, <nowiki>#</nowiki>3-29-<nowiki>#</nowiki>5, <nowiki>#</nowiki>37-<nowiki>#</nowiki>5, <nowiki>#</nowiki>20-<nowiki>#</nowiki>28 into 0901 WT comp. | + | <html>**<nowiki>#</nowiki><span class="part_num">2</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-</html<html><nowiki>#</nowiki><span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">29</span>-</html<html><nowiki>#</nowiki><span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">37</span>-</html<html><nowiki>#</nowiki><span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span>-</html<html><nowiki>#</nowiki><span class="part_num">28</span></html into 0901 WT comp. |
- | **<nowiki>#</nowiki>36 into Takara comp. | + | <html>**<nowiki>#</nowiki><span class="part_num">36</span></html into Takara comp. |
- | **<nowiki>#</nowiki>2, <nowiki>#</nowiki>5 as Negative Controls into 0901 WT comp. | + | <html>**<nowiki>#</nowiki><span class="part_num">2</span></html<html>, <nowiki>#</nowiki><span class="part_num">5</span></html as Negative Controls into 0901 WT comp. |
- | *Culture for Miniprep(<nowiki>#</nowiki>20-3-14-5, <nowiki>#</nowiki>20) | + | <html>*Culture for Miniprep(<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span></html) |
- | *Digest(<nowiki>#</nowiki>20) | + | <html>*Digest(<nowiki>#</nowiki><span class="part_num">20</span></html) |
<html></div></html> | <html></div></html> | ||
<html><div class="labDay"></html> | <html><div class="labDay"></html> | ||
==='11/09/05(Mon)=== | ==='11/09/05(Mon)=== | ||
- | *Colony Diffusion Assays (<nowiki>#</nowiki>2-9) WT,cheZ- | + | <html>*Colony Diffusion Assays (<nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">9</span></html) WT,cheZ- |
- | *Gel extraction(<nowiki>#</nowiki>20) | + | <html>*Gel extraction(<nowiki>#</nowiki><span class="part_num">20</span></html) |
*Luciferase Assays | *Luciferase Assays | ||
**Calibrations (Firefly Luciferase standards) | **Calibrations (Firefly Luciferase standards) | ||
**Background Assay | **Background Assay | ||
- | **Dual Luciferase Assay(<nowiki>#</nowiki>20-3-14-5, <nowiki>#</nowiki>20-3-17-5) | + | <html>**Dual Luciferase Assay(<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html) |
- | *Colony PCR(<nowiki>#</nowiki>2-<nowiki>#</nowiki>3-14-5, <nowiki>#</nowiki>3-27-<nowiki>#</nowiki>5, <nowiki>#</nowiki>3-29-<nowiki>#</nowiki>5, <nowiki>#</nowiki>37-<nowiki>#</nowiki>5, <nowiki>#</nowiki>20-<nowiki>#</nowiki>28, <nowiki>#</nowiki>36) | + | <html>*Colony PCR(<nowiki>#</nowiki><span class="part_num">2</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-</html<html><nowiki>#</nowiki><span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">29</span>-</html<html><nowiki>#</nowiki><span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">37</span>-</html<html><nowiki>#</nowiki><span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span>-</html<html><nowiki>#</nowiki><span class="part_num">28</span></html<html>, <nowiki>#</nowiki><span class="part_num">36</span></html) |
- | *PCR -> clean-up -> Digest(<nowiki>#</nowiki>3-29-<nowiki>#</nowiki>5, <nowiki>#</nowiki>37-5) | + | <html>*PCR -> clean-up -> Digest(<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">29</span>-</html<html><nowiki>#</nowiki><span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">37</span>-<span class="part_num">5</span></html) |
*IPTG-inducted Cell lysis test(IPTG+, LB plate (Positive control)) | *IPTG-inducted Cell lysis test(IPTG+, LB plate (Positive control)) | ||
- | *Miniprep(<nowiki>#</nowiki>20-3-14-5, <nowiki>#</nowiki>37-5, <nowiki>#</nowiki>36) | + | <html>*Miniprep(<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">37</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">36</span></html) |
*Making M9 -> Asp -> all failed(.125%, .25% Agar) | *Making M9 -> Asp -> all failed(.125%, .25% Agar) | ||
- | *Culture for Miniprep(<nowiki>#</nowiki>2-3-14-5) | + | <html>*Culture for Miniprep(<nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html) |
<html></div></html> | <html></div></html> | ||
<html><div class="labDay"></html> | <html><div class="labDay"></html> | ||
==='11/09/06(Tue)=== | ==='11/09/06(Tue)=== | ||
- | *Gel extraction(<nowiki>#</nowiki>37-5, <nowiki>#</nowiki>3-29-5) | + | <html>*Gel extraction(<nowiki>#</nowiki><span class="part_num">37</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html) |
- | *Miniprep(<nowiki>#</nowiki>2-3-14-5, <nowiki>#</nowiki>20-3-14-5, <nowiki>#</nowiki>20-3-17-5, <nowiki>#</nowiki>36, <nowiki>#</nowiki>3-29-5, <nowiki>#</nowiki>37-5) | + | <html>*Miniprep(<nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">36</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">37</span>-<span class="part_num">5</span></html) |
- | *PCR (retry) (Hot-start & Normal PCR) -> Purification -> Digest(<nowiki>#</nowiki>3-29- | + | <html>*PCR (retry) (Hot-start & Normal PCR) -> Purification -> Digest(<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html<html>_XP, <nowiki>#</nowiki><span class="part_num">37</span>-<span class="part_num">5</span></html_ES) |
*PCR (cloning retry)(lexA, uvrBp) | *PCR (cloning retry)(lexA, uvrBp) | ||
*Ligation & Transformation | *Ligation & Transformation | ||
- | **<nowiki>#</nowiki>3-27-<nowiki>#</nowiki>5, <nowiki>#</nowiki>3-30-<nowiki>#</nowiki>5, <nowiki>#</nowiki>2-3-11-5- | + | <html>**<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-</html<html><nowiki>#</nowiki><span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">30</span>-</html<html><nowiki>#</nowiki><span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span>-</htmlpSB1AK3 |
- | **<nowiki>#</nowiki>5, pSB1AK3 (N.C.) | + | <html>**<nowiki>#</nowiki><span class="part_num">5</span></html, pSB1AK3 (N.C.) |
- | *Culture for GFP live-imaging (<nowiki>#</nowiki>2-9 WT/cheZ-) -> 4℃ storage | + | <html>*Culture for GFP live-imaging (<nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">9</span></html WT/cheZ-) -> 4℃ storage |
*Ninhydrin sol. preparation (Not dissolvable!) -> 4℃ storage | *Ninhydrin sol. preparation (Not dissolvable!) -> 4℃ storage | ||
<html></div></html> | <html></div></html> | ||
Line 851: | Line 851: | ||
<html><div class="labDay"></html> | <html><div class="labDay"></html> | ||
==='11/09/07(Wed)=== | ==='11/09/07(Wed)=== | ||
- | *Colony PCR(<nowiki>#</nowiki>3-27-5, <nowiki>#</nowiki>3-30-5) | + | <html>*Colony PCR(<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">30</span>-<span class="part_num">5</span></html) |
- | *Digest(<nowiki>#</nowiki> | + | <html>*Digest(<nowiki>#</nowiki><span class="part_num">36</span></html_SP) |
- | *Culture from master plate(<nowiki>#</nowiki>36, <nowiki>#</nowiki>3-29-5, <nowiki>#</nowiki>37-5) | + | <html>*Culture from master plate(<nowiki>#</nowiki><span class="part_num">36</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">37</span>-<span class="part_num">5</span></html) |
- | *Miniprep(<nowiki>#</nowiki>36, <nowiki>#</nowiki>3-29-5, <nowiki>#</nowiki>37-5, <nowiki>#</nowiki>3-27-5 (failed)) | + | <html>*Miniprep(<nowiki>#</nowiki><span class="part_num">36</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">37</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-<span class="part_num">5</span></html (failed)) |
*PCR purification & Digest(lexA_XP, uvrBp_ES) | *PCR purification & Digest(lexA_XP, uvrBp_ES) | ||
- | *Gel extraction(<nowiki>#</nowiki>3-29- | + | <html>*Gel extraction(<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html<html>_XP, <nowiki>#</nowiki><span class="part_num">37</span>-<span class="part_num">5</span></html<html>_ES, pSB1AK3_EP, <nowiki>#</nowiki><span class="part_num">36</span></html_SP) |
- | *PCR amplification -> Digest(<nowiki>#</nowiki>3-14-5, <nowiki>#</nowiki>3-29-5, <nowiki>#</nowiki>37-5, <nowiki>#</nowiki>3-27-5) | + | <html>*PCR amplification -> Digest(<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">37</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-<span class="part_num">5</span></html) |
- | *Digest(<nowiki>#</nowiki> | + | <html>*Digest(<nowiki>#</nowiki><span class="part_num">36</span></html<html>_SP (re), <nowiki>#</nowiki><span class="part_num">2</span></html<html>_SP, <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>_EX, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>_ES, <nowiki>#</nowiki><span class="part_num">34</span></html_SP) |
- | *Culture for Miniprep(<nowiki>#</nowiki>2, <nowiki>#</nowiki>34, <nowiki>#</nowiki>36, <nowiki>#</nowiki>3-27-5, <nowiki>#</nowiki>3-14-5, <nowiki>#</nowiki>2-3-17-5) | + | <html>*Culture for Miniprep(<nowiki>#</nowiki><span class="part_num">2</span></html<html>, <nowiki>#</nowiki><span class="part_num">34</span></html<html>, <nowiki>#</nowiki><span class="part_num">36</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html) |
Ligation & Transformation | Ligation & Transformation | ||
- | **<nowiki>#</nowiki>33-<nowiki>#</nowiki>3-14-5, <nowiki>#</nowiki>34-<nowiki>#</nowiki>3-14-5, <nowiki>#</nowiki>36-<nowiki>#</nowiki>3-14-5, <nowiki>#</nowiki>2-<nowiki>#</nowiki>3-29-5, <nowiki>#</nowiki>20-<nowiki>#</nowiki>3-29-5, <nowiki>#</nowiki>3-<nowiki>#</nowiki>37-5, <nowiki>#</nowiki>2-3-11-5-pSB1AK3, <nowiki>#</nowiki>1-<nowiki>#</nowiki>3-17-5 | + | <html>**<nowiki>#</nowiki><span class="part_num">33</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">34</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">36</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">2</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-</html<html><nowiki>#</nowiki><span class="part_num">37</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span>-</html<html>pSB1AK3, <nowiki>#</nowiki><span class="part_num">1</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html |
- | **<nowiki>#</nowiki>33, <nowiki>#</nowiki>34, <nowiki>#</nowiki>36, <nowiki>#</nowiki>1, <nowiki>#</nowiki>2, <nowiki>#</nowiki>20, <nowiki>#</nowiki>3, pSB1AK3 (N.C.) | + | <html>**<nowiki>#</nowiki><span class="part_num">33</span></html<html>, <nowiki>#</nowiki><span class="part_num">34</span></html<html>, <nowiki>#</nowiki><span class="part_num">36</span></html<html>, <nowiki>#</nowiki><span class="part_num">1</span></html<html>, <nowiki>#</nowiki><span class="part_num">2</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span></html, pSB1AK3 (N.C.) |
*Ninhydrin stock solution preparation | *Ninhydrin stock solution preparation | ||
**Asp conc. check (it took 5 min at 80C) | **Asp conc. check (it took 5 min at 80C) | ||
Line 871: | Line 871: | ||
==='11/09/08(Thu)=== | ==='11/09/08(Thu)=== | ||
*Making competent cell (WT), LB(amp) plate | *Making competent cell (WT), LB(amp) plate | ||
- | *Frozen stocks(<nowiki>#</nowiki>36, <nowiki>#</nowiki>3-14-5, <nowiki>#</nowiki>3-27-5) | + | <html>*Frozen stocks(<nowiki>#</nowiki><span class="part_num">36</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-<span class="part_num">5</span></html) |
- | *Colony PCR(<nowiki>#</nowiki>33-3-14-5, <nowiki>#</nowiki>34-3-14-5, <nowiki>#</nowiki>36-3-14-5, <nowiki>#</nowiki>20-3-29-5, <nowiki>#</nowiki>2-3-11-5(psB1AK3)) | + | <html>*Colony PCR(<nowiki>#</nowiki><span class="part_num">33</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">34</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html(psB1AK3)) |
- | *Miniprep(<nowiki>#</nowiki>2, <nowiki>#</nowiki>34, <nowiki>#</nowiki>36, <nowiki>#</nowiki>2-3-17-5, <nowiki>#</nowiki>3-27-5, <nowiki>#</nowiki>3-14-5) | + | <html>*Miniprep(<nowiki>#</nowiki><span class="part_num">2</span></html<html>, <nowiki>#</nowiki><span class="part_num">34</span></html<html>, <nowiki>#</nowiki><span class="part_num">36</span></html<html>, <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html) |
*Gel extraction | *Gel extraction | ||
- | **PCR product: <nowiki>#</nowiki> | + | <html>**PCR product: <nowiki>#</nowiki><span class="part_num">35</span></html<html>_SP, <nowiki>#</nowiki><span class="part_num">31</span></html<html>_XP, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>_XP, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-<span class="part_num">5</span></html<html>_XP, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html<html>_XP, <nowiki>#</nowiki><span class="part_num">37</span>-<span class="part_num">5</span></html_XP |
- | **Miniprep product: <nowiki>#</nowiki> | + | <html>**Miniprep product: <nowiki>#</nowiki><span class="part_num">2</span></html<html>_SP, <nowiki>#</nowiki><span class="part_num">34</span></html<html>_SP, <nowiki>#</nowiki><span class="part_num">36</span></html<html>_SP, <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>_EX, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html_ES |
- | *PCR amplification(<nowiki>#</nowiki>34-3-14-5, <nowiki>#</nowiki>36-3-14-5, <nowiki>#</nowiki>20-3-29-5, <nowiki>#</nowiki>20-3-14-5) | + | <html>*PCR amplification(<nowiki>#</nowiki><span class="part_num">34</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html) |
- | *PCR for Sequencing -> Store at -20C(<nowiki>#</nowiki>33-3-11-5, <nowiki>#</nowiki>34-3-14-5, <nowiki>#</nowiki>20-3-29-5, <nowiki>#</nowiki>37-5) | + | <html>*PCR for Sequencing -> Store at -20C(<nowiki>#</nowiki><span class="part_num">33</span>-<span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">34</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">37</span>-<span class="part_num">5</span></html) |
- | *Ligation(<nowiki>#</nowiki> | + | <html>*Ligation(<nowiki>#</nowiki><span class="part_num">35</span></html<html>_ES-psB1AK3_ES, <nowiki>#</nowiki><span class="part_num">31</span></html<html>_XP-psB1A2_XP, <nowiki>#</nowiki><span class="part_num">31</span></html<html>_XP-psB1AK3_XP, <nowiki>#</nowiki><span class="part_num">3</span>-</html<html><nowiki>#</nowiki><span class="part_num">37</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>_ES-<nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>_EX, <nowiki>#</nowiki><span class="part_num">20</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-<span class="part_num">5</span></html) |
- | *Culture for Miniprep(<nowiki>#</nowiki>34-3-17-5, <nowiki>#</nowiki>36-3-14-5, <nowiki>#</nowiki>20-3-29-5, <nowiki>#</nowiki>2-3-11-5) | + | <html>*Culture for Miniprep(<nowiki>#</nowiki><span class="part_num">34</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html) |
*Digest | *Digest | ||
- | **PCR products: <nowiki>#</nowiki>34-3-14- | + | <html>**PCR products: <nowiki>#</nowiki><span class="part_num">34</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>_ES, <nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>_ES, <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html_ES |
**pSB1C3_EP | **pSB1C3_EP | ||
*Asp Gradient test | *Asp Gradient test | ||
Line 890: | Line 890: | ||
==='11/09/09(Fri)=== | ==='11/09/09(Fri)=== | ||
*Making competent cell (WT), TB | *Making competent cell (WT), TB | ||
- | *Colony PCR(<nowiki>#</nowiki>35-pSB1AK3 (failed), <nowiki>#</nowiki>31-pSB1AK3, <nowiki>#</nowiki>3-<nowiki>#</nowiki>37-5, <nowiki>#</nowiki>36-<nowiki>#</nowiki>3-29-5, <nowiki>#</nowiki>3-14-5-<nowiki>#</nowiki>2-3-17-5, <nowiki>#</nowiki>20-3-27-5(failed)) | + | <html>*Colony PCR(<nowiki>#</nowiki><span class="part_num">35</span>-</html<html>pSB1AK3 (failed), <nowiki>#</nowiki><span class="part_num">31</span>-</html<html>pSB1AK3, <nowiki>#</nowiki><span class="part_num">3</span>-</html<html><nowiki>#</nowiki><span class="part_num">37</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">36</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-</html<html><nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">27</span>-<span class="part_num">5</span></html(failed)) |
*PCR amplification | *PCR amplification | ||
- | **From Miniprep : <nowiki>#</nowiki>3-14-5, <nowiki>#</nowiki>3-17-5 | + | <html>**From Miniprep : <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html |
- | **From Colony PCR : <nowiki>#</nowiki>31, <nowiki>#</nowiki>3-37-5, <nowiki>#</nowiki>36-3-29-5, <nowiki>#</nowiki>3-14-5-2-3-17-5 (failed) | + | <html>**From Colony PCR : <nowiki>#</nowiki><span class="part_num">31</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html (failed) |
*Digest | *Digest | ||
- | **Miniprep product: <nowiki>#</nowiki>3-11- | + | <html>**Miniprep product: <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html_EP |
- | **PCR-purified product: <nowiki>#</nowiki>3-14- | + | <html>**PCR-purified product: <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>_EP, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>_EP, <nowiki>#</nowiki><span class="part_num">31</span></html<html>_EP, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html<html>_XP, <nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html_ES |
- | *Miniprep(<nowiki>#</nowiki>34-3-14-5, <nowiki>#</nowiki>36-3-14-5, <nowiki>#</nowiki>20-3-29-5, <nowiki>#</nowiki>2-3-11-5 (pSB1AK3)) | + | <html>*Miniprep(<nowiki>#</nowiki><span class="part_num">34</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html (pSB1AK3)) |
- | *Gel extraction(<nowiki>#</nowiki>34-3-14- | + | <html>*Gel extraction(<nowiki>#</nowiki><span class="part_num">34</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>_ES, <nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>_ES, <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>_ES, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html_EP) |
*Ligation | *Ligation | ||
- | **<nowiki>#</nowiki>3-11- | + | <html>**<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html<html>_EP-pSB1C3_EP, <nowiki>#</nowiki><span class="part_num">29</span></html_XP-pSB1AK3_XP |
- | **<nowiki>#</nowiki>36-3-14- | + | <html>**<nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>_ES-<nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>_EX, <nowiki>#</nowiki><span class="part_num">20</span></html<html>_SP-<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-<span class="part_num">5</span></html_XP(retry) |
*Comp. check | *Comp. check | ||
- | **<nowiki>#</nowiki>2-3-11-5 (pSB1AK3) into 0908 WT comp. | + | <html>**<nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html (pSB1AK3) into 0908 WT comp. |
- | **<nowiki>#</nowiki>20-3-29-5 into 0909 WT comp. | + | <html>**<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html into 0909 WT comp. |
- | **<nowiki>#</nowiki>20-3-29-5 into 0802 cheZ- comp. | + | <html>**<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html into 0802 cheZ- comp. |
*Part cloning(BBa_J04450 (IPTG-induced RFP reporter on pSB1C3)) | *Part cloning(BBa_J04450 (IPTG-induced RFP reporter on pSB1C3)) | ||
- | *Culture for Miniprep(<nowiki>#</nowiki>31-pSB1AK3, <nowiki>#</nowiki>3-37-5, <nowiki>#</nowiki>36-3-29-5, <nowiki>#</nowiki>3-14-5-2-3-17-5) | + | <html>*Culture for Miniprep(<nowiki>#</nowiki><span class="part_num">31</span>-</html<html>pSB1AK3, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html) |
- | *UV irradiation -> Luciferase Assay(<nowiki>#</nowiki>24-3-17-5, <nowiki>#</nowiki>34-3-17-5) | + | <html>*UV irradiation -> Luciferase Assay(<nowiki>#</nowiki><span class="part_num">24</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">34</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html) |
*Asp Gradient test | *Asp Gradient test | ||
- | *CleanSEQ -> Sequencing(<nowiki>#</nowiki>33-3-11-5, <nowiki>#</nowiki>34-3-14-5, <nowiki>#</nowiki>20-3-29-5, <nowiki>#</nowiki>37-5) | + | <html>*CleanSEQ -> Sequencing(<nowiki>#</nowiki><span class="part_num">33</span>-<span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">34</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">37</span>-<span class="part_num">5</span></html) |
<html></div></html> | <html></div></html> | ||
Line 916: | Line 916: | ||
==='11/09/10(Sat)=== | ==='11/09/10(Sat)=== | ||
*Culture plate storage (4℃) | *Culture plate storage (4℃) | ||
- | *Miniprep(<nowiki>#</nowiki>31-pSB1AK3, <nowiki>#</nowiki>3-37-5, <nowiki>#</nowiki>36-3-29-5, <nowiki>#</nowiki>3-14-5-2-3-17-5) | + | <html>*Miniprep(<nowiki>#</nowiki><span class="part_num">31</span>-</html<html>pSB1AK3, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html) |
- | *Gel extraction(<nowiki>#</nowiki>3-14- | + | <html>*Gel extraction(<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>_EP, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>_EP, <nowiki>#</nowiki><span class="part_num">31</span></html<html>_EP, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html<html>_XP, <nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html_ES) |
- | *Colony PCR(<nowiki>#</nowiki>36-3-14-5-<nowiki>#</nowiki>2-3-17-5 (Maybe Ligation was FAILURE , estimated length is 1000-1500 by electrophoresis)) | + | <html>*Colony PCR(<nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-</html<html><nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html (Maybe Ligation was FAILURE , estimated length is 1000-1500 by electrophoresis)) |
- | *Ligation(<nowiki>#</nowiki> | + | <html>*Ligation(<nowiki>#</nowiki><span class="part_num">20</span></html<html>_SP-<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html_XP) |
<html></div></html> | <html></div></html> | ||
Line 925: | Line 925: | ||
==='11/09/11(Sun)=== | ==='11/09/11(Sun)=== | ||
*Digest from Miniprep products | *Digest from Miniprep products | ||
- | **<nowiki>#</nowiki>3-14-5-2-3-17- | + | <html>**<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html_XP |
- | **<nowiki>#</nowiki>36-3-14- | + | <html>**<nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>_SP, <nowiki>#</nowiki><span class="part_num">20</span></html_SP -> O.N. |
*Colony PCR | *Colony PCR | ||
- | **<nowiki>#</nowiki>3-11-5 (pSB1C3), <nowiki>#</nowiki>29 (pSB1AK3), BBa_J04450 (pSB1C3) | + | <html>**<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html<html> (pSB1C3), <nowiki>#</nowiki><span class="part_num">29</span></html (pSB1AK3), BBa_J04450 (pSB1C3) |
- | **<nowiki>#</nowiki>20-<nowiki>#</nowiki>3-27-5(failed), <nowiki>#</nowiki>20-<nowiki>#</nowiki>3-37-5, <nowiki>#</nowiki>36-<nowiki>#</nowiki>3-14-5-2-3-17-5 | + | <html>**<nowiki>#</nowiki><span class="part_num">20</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-<span class="part_num">5</span></html<html>(failed), <nowiki>#</nowiki><span class="part_num">20</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">36</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html |
- | *Gel extraction(<nowiki>#</nowiki>3-14-5-2-3-17- | + | <html>*Gel extraction(<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html_XP) |
*Culture for Miniprep | *Culture for Miniprep | ||
- | **From Master plate : <nowiki>#</nowiki>20-3-37-5, <nowiki>#</nowiki>29 (pSB1AK3), BBa_J04450 (pSB1C3) | + | <html>**From Master plate : <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">29</span></html (pSB1AK3), BBa_J04450 (pSB1C3) |
- | **From plate stock : <nowiki>#</nowiki>20 | + | <html>**From plate stock : <nowiki>#</nowiki><span class="part_num">20</span></html |
- | **From frozen stock : <nowiki>#</nowiki>2-3-17-5 | + | <html>**From frozen stock : <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html |
- | *Miniprep( <nowiki>#</nowiki>36-3-14-5-2-3-17-5) | + | <html>*Miniprep( <nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html) |
- | *Ligation(<nowiki>#</nowiki> | + | <html>*Ligation(<nowiki>#</nowiki><span class="part_num">20</span></html<html>_SP-<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>_XP, <nowiki>#</nowiki><span class="part_num">1</span></html<html>_SP-<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html_XP) |
*Direct Ligation | *Direct Ligation | ||
- | **i.PCR amplification -> Digest for >1h -> Heat kill for 20min (<nowiki>#</nowiki>20-3-37- | + | <html>**i.PCR amplification -> Digest for >1h -> Heat kill for 20min (<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html<html>_XP, <nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html_ES) |
- | **ii.Digest for >1h -> Heat kill for 20min (<nowiki>#</nowiki>36-3-14-5-2-3-17- | + | <html>**ii.Digest for >1h -> Heat kill for 20min (<nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>_SP, pSB1A3_EP, <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html_EX) |
- | **iii.Ligation for 30min (<nowiki>#</nowiki>20-3-14- | + | <html>**iii.Ligation for 30min (<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>_ES-<nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>_EX, <nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>_SP-<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html<html>_XP, <nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>_ES-<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html_XP-pSB1A3_EP) |
**iv.Transformation | **iv.Transformation | ||
*Making 0.125% agar LB amp plate (IPTG 1, 10, 30, 100uM) | *Making 0.125% agar LB amp plate (IPTG 1, 10, 30, 100uM) | ||
*Cell Diffusion Assay | *Cell Diffusion Assay | ||
- | **<nowiki>#</nowiki>20-3-29-5 WT (IPTG 1, 10, 30, 100uM) | + | <html>**<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html WT (IPTG 1, 10, 30, 100uM) |
- | **<nowiki>#</nowiki>20-3-29-5 cheZ-/- (IPTG 1, 10, 30, 100uM) | + | <html>**<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html cheZ-/- (IPTG 1, 10, 30, 100uM) |
**WT | **WT | ||
**cheZ-/- | **cheZ-/- | ||
Line 953: | Line 953: | ||
==='11/9/12 (Mon)=== | ==='11/9/12 (Mon)=== | ||
*Colony PCR | *Colony PCR | ||
- | **<nowiki>#</nowiki>20-<nowiki>#</nowiki>3-14-5-2-3-17-5 | + | <html>**<nowiki>#</nowiki><span class="part_num">20</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html |
- | **<nowiki>#</nowiki>20-3-14-5-<nowiki>#</nowiki>2-3-17-5 | + | <html>**<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-</html<html><nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html |
- | **<nowiki>#</nowiki>1-<nowiki>#</nowiki>3-14-5-2-3-17-5 | + | <html>**<nowiki>#</nowiki><span class="part_num">1</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html |
- | **<nowiki>#</nowiki>36-3-14-5-2-3-17-5-<nowiki>#</nowiki>20-3-37-5 (no colony) | + | <html>**<nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span>-</html<html><nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html (no colony) |
- | **<nowiki>#</nowiki>36-3-14-5-2-3-17-5-<nowiki>#</nowiki>20-3-37-5- | + | <html>**<nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span>-</html<html><nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span>-</htmlpSB1A3 (PCR failed?) |
- | Note: <nowiki>#</nowiki>20-3-37-5 colonies on the master-plate are RED. Maybe <nowiki>#</nowiki>2-3-11-5...<br> | + | <html>Note: <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html<html> colonies on the master-plate are RED. Maybe <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html...<br> |
- | Note: <nowiki>#</nowiki>36-3-14-5-2-3-17-5-<nowiki>#</nowiki>20-3-37-5- | + | <html>Note: <nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span>-</html<html><nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span>-</htmlpSB1A3 PCR amplification doesn't work. Seems failed extension... |
*PCR amplification | *PCR amplification | ||
- | **From master plate : <nowiki>#</nowiki>20-3-37-5 | + | <html>**From master plate : <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html |
- | **From 09/11 Miniprep product : <nowiki>#</nowiki>36-3-14-5-2-3-17-5 | + | <html>**From 09/11 Miniprep product : <nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html |
- | Note: Only one <nowiki>#</nowiki>20-3-37-5 colony is NOT RED. | + | <html>Note: Only one <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html colony is NOT RED. |
- | *Miniprep(<nowiki>#</nowiki>20, <nowiki>#</nowiki>29 (pSB1AK3), <nowiki>#</nowiki>2-3-17-5, <nowiki>#</nowiki>2-3-37-5, BBa_J04450 (pSB1C3)) | + | <html>*Miniprep(<nowiki>#</nowiki><span class="part_num">20</span></html<html>, <nowiki>#</nowiki><span class="part_num">29</span></html<html> (pSB1AK3), <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html, BBa_J04450 (pSB1C3)) |
*Digest | *Digest | ||
- | **From PCR : <nowiki>#</nowiki>36-3-14-5-2-3-17- | + | <html>**From PCR : <nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>_ES, <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html_XP |
**pSB1A3_EP, pSB1C3_EP | **pSB1A3_EP, pSB1C3_EP | ||
- | **From Miniprep : <nowiki>#</nowiki>20-3-37- | + | <html>**From Miniprep : <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html_XP |
- | **J04450_EP, *<nowiki>#</nowiki>2- | + | <html>**J04450_EP, *<nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">9</span></html<html>_XP, <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html_ES |
*Gel extraction | *Gel extraction | ||
- | **<nowiki>#</nowiki> | + | <html>**<nowiki>#</nowiki><span class="part_num">20</span></html<html>_SP, <nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html_SP |
- | **From OverNight digests : <nowiki>#</nowiki>2-3-17- | + | <html>**From OverNight digests : <nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html_EX |
- | **<nowiki>#</nowiki>36-3-14-5-2-3-17- | + | <html>**<nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html_ES |
- | **From today's PCR digests : <nowiki>#</nowiki>20-3-37- | + | <html>**From today's PCR digests : <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html_XP |
- | *Culture for Miniprep(<nowiki>#</nowiki>20-3-37-5 from 0911 master plate) | + | <html>*Culture for Miniprep(<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html from 0911 master plate) |
- | *Dual Luciferase Assay(<nowiki>#</nowiki>20-3-14-5-2-3-17-5, <nowiki>#</nowiki>1-3-14-5-2-3-17-5, <nowiki>#</nowiki>36-3-14-5-2-3-17-5-20-3-37-5- | + | <html>*Dual Luciferase Assay(<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">1</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span>-<span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span>-</htmlpSB1A3) |
*Ligation | *Ligation | ||
- | **<nowiki>#</nowiki>36-3-14-5-2-3-17- | + | <html>**<nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>_ES-<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html_XP-pSB1A3_EP |
- | **<nowiki>#</nowiki>36-3-14-5-2-3-17- | + | <html>**<nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>_ES-<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html_XP-pSB1C3_EP |
- | **<nowiki>#</nowiki>3-27- | + | <html>**<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-<span class="part_num">5</span></html<html>_XP-<nowiki>#</nowiki><span class="part_num">20</span></html_SP |
- | **<nowiki>#</nowiki>36-3-29- | + | <html>**<nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html<html>_ES-<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html_XP-pSB1AK3_EP |
<html></div></html> | <html></div></html> | ||
Line 987: | Line 987: | ||
==='11/9/13 (Tue)=== | ==='11/9/13 (Tue)=== | ||
*Colony PCR | *Colony PCR | ||
- | **<nowiki>#</nowiki>36-3-14-5-2-3-17- | + | <html>**<nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>_ES-<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html_XP-pSB1A3_EP |
- | **<nowiki>#</nowiki>36-3-14-5-2-3-17- | + | <html>**<nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>_ES-<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html_XP-pSB1C3_EP (failed) |
- | **<nowiki>#</nowiki>3-27- | + | <html>**<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-<span class="part_num">5</span></html<html>_XP-<nowiki>#</nowiki><span class="part_num">20</span></html_SP (failed) |
- | **<nowiki>#</nowiki>36-3-29- | + | <html>**<nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html<html>_ES-<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html_XP-pSB1AK3_EP |
*Culture for Luciferase Assay | *Culture for Luciferase Assay | ||
- | **<nowiki>#</nowiki>36-3-14-5-2-3-17-5-20-3-37-5(pSB1A3, pSB1C3) (IPTG 0, 1, 10, 38, 100uM) | + | <html>**<nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span>-<span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html(pSB1A3, pSB1C3) (IPTG 0, 1, 10, 38, 100uM) |
- | **<nowiki>#</nowiki>20-3-14-5-2-3-17-5 (IPTG 0, 1, 10, 38, 100uM) | + | <html>**<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html (IPTG 0, 1, 10, 38, 100uM) |
- | **<nowiki>#</nowiki>1-3-14-5-2-3-17-5 (IPTG 0uM)<br> | + | <html>**<nowiki>#</nowiki><span class="part_num">1</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html (IPTG 0uM)<br> |
Note: Seemes OD600 should NOT exceed 0.4~0.5, or intracellular luciferase will be saturated. | Note: Seemes OD600 should NOT exceed 0.4~0.5, or intracellular luciferase will be saturated. | ||
*Miniprep. | *Miniprep. | ||
- | **<nowiki>#</nowiki>20-3-14-5-2-3-17-5 | + | <html>**<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html |
- | **<nowiki>#</nowiki>1-3-14-5-2-3-17-5 | + | <html>**<nowiki>#</nowiki><span class="part_num">1</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html |
- | **<nowiki>#</nowiki>20-3-37-5 (from a non-red colony on the master plate) | + | <html>**<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html (from a non-red colony on the master plate) |
*Gel extraction | *Gel extraction | ||
- | **<nowiki>#</nowiki>20-3-37- | + | <html>**<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html_XP (from non-red colony) |
- | **<nowiki>#</nowiki>20-3-29- | + | <html>**<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html_ES(failed) |
- | **<nowiki>#</nowiki>2- | + | <html>**<nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">9</span></html_XP, pSB1C3_EP |
- | Note: <nowiki>#</nowiki>20-3-29-5 was not cut! | + | <html>Note: <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html was not cut! |
*Dual Luciferase Assay | *Dual Luciferase Assay | ||
- | **<nowiki>#</nowiki>1-3-14-5-2-3-17-5 (IPTG 0uM) | + | <html>**<nowiki>#</nowiki><span class="part_num">1</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html (IPTG 0uM) |
- | **<nowiki>#</nowiki>20-3-14-5-2-3-17-5 (IPTG 0, 1, 10, 38, 100uM) | + | <html>**<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html (IPTG 0, 1, 10, 38, 100uM) |
- | **<nowiki>#</nowiki>36-3-14-5-2-3-17-5-20-3-37-5 (<nowiki>#</nowiki>2-3-11-5?) (IPTG 0, 1, 10, 38, 100uM) | + | <html>**<nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span>-<span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html<html> (<nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html?) (IPTG 0, 1, 10, 38, 100uM) |
*Sequencing preparation | *Sequencing preparation | ||
- | **<nowiki>#</nowiki>20-3-37-5 (from a non-red colony on the master plate) | + | <html>**<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html (from a non-red colony on the master plate) |
- | **<nowiki>#</nowiki>20-3-29-5 | + | <html>**<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html |
- | **<nowiki>#</nowiki>3-27-5 | + | <html>**<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-<span class="part_num">5</span></html |
- | **<nowiki>#</nowiki>31 | + | <html>**<nowiki>#</nowiki><span class="part_num">31</span></html |
*Digest | *Digest | ||
- | **<nowiki>#</nowiki> | + | <html>**<nowiki>#</nowiki><span class="part_num">20</span></html_E |
- | **<nowiki>#</nowiki>3-29- | + | <html>**<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html_S (from MP products) (cut check) |
*Ligation | *Ligation | ||
- | **<nowiki>#</nowiki> | + | <html>**<nowiki>#</nowiki><span class="part_num">20</span></html<html>_SP-<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-<span class="part_num">5</span></html_XP |
*Transformation | *Transformation | ||
- | **<nowiki>#</nowiki>3-14-5-2-3-17-5 | + | <html>**<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html |
- | **<nowiki>#</nowiki>1-3-14-5-2-3-17-5 | + | <html>**<nowiki>#</nowiki><span class="part_num">1</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html |
- | **<nowiki>#</nowiki>20-3-14-5-2-3-17-5 (for plate stock) | + | <html>**<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html (for plate stock) |
- | **<nowiki>#</nowiki>20-3-37-5 (from a non-red colony on the master plate) (for plasmid check) | + | <html>**<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html (from a non-red colony on the master plate) (for plasmid check) |
<html></div></html> | <html></div></html> | ||
Line 1,029: | Line 1,029: | ||
==='11/09/14(Wed)=== | ==='11/09/14(Wed)=== | ||
*Colony PCR | *Colony PCR | ||
- | **<nowiki>#</nowiki>3-27- | + | <html>**<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-<span class="part_num">5</span></html<html>_XP-<nowiki>#</nowiki><span class="part_num">20</span></html_SP (failed) |
*Culture for Luciferase Assay (from plate stocks) | *Culture for Luciferase Assay (from plate stocks) | ||
- | **<nowiki>#</nowiki>20-3-14-5-2-3-17-5 (IPTG 0, 1, 10, 38, 100uM) | + | <html>**<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html (IPTG 0, 1, 10, 38, 100uM) |
- | **<nowiki>#</nowiki>1-3-14-5-2-3-17-5 (IPTG 0uM) | + | <html>**<nowiki>#</nowiki><span class="part_num">1</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html (IPTG 0uM) |
*Digest | *Digest | ||
- | **<nowiki>#</nowiki>3-14-5, <nowiki>#</nowiki>3-17-5, <nowiki>#</nowiki>3-14-5-2-3-17-5, <nowiki>#</nowiki>1-3-14-5-2-3-17-5, <nowiki>#</nowiki>20-3-14-5-2-3-17-5 (EPcut) | + | <html>**<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">1</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html (EPcut) |
- | **<nowiki>#</nowiki> | + | <html>**<nowiki>#</nowiki><span class="part_num">20</span></html_SP |
*Culture for Miniprep. | *Culture for Miniprep. | ||
- | **From plate stock : <nowiki>#</nowiki>20, <nowiki>#</nowiki>20-3-14-5-2-3-17-5, <nowiki>#</nowiki>3-14-5-2-3-17-5, <nowiki>#</nowiki>3-17-5 | + | <html>**From plate stock : <nowiki>#</nowiki><span class="part_num">20</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html |
- | **From 09/11 master plate : <nowiki>#</nowiki>3-11-5 (pSB1C3) | + | <html>**From 09/11 master plate : <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html (pSB1C3) |
- | *Part cloning(<nowiki>#</nowiki>19: BBa_R0010) | + | <html>*Part cloning(<nowiki>#</nowiki><span class="part_num">19</span></html: BBa_R0010) |
*Ligation | *Ligation | ||
- | **<nowiki>#</nowiki> | + | <html>**<nowiki>#</nowiki><span class="part_num">20</span></html<html>_SP-<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html_XP |
- | **<nowiki>#</nowiki>36-3-14-5-2-3-17- | + | <html>**<nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>_ES-<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html_XP-pSB1C3 |
*Making WT competent cell | *Making WT competent cell | ||
*Dual Luciferase Assay | *Dual Luciferase Assay | ||
- | **<nowiki>#</nowiki>1-3-14-5-2-3-17-5 (IPTG 0uM) | + | <html>**<nowiki>#</nowiki><span class="part_num">1</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html (IPTG 0uM) |
- | **<nowiki>#</nowiki>20-3-14-5-2-3-17-5 (IPTG 0, 1, 10, 38, 100uM) | + | <html>**<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html (IPTG 0, 1, 10, 38, 100uM) |
*Asp TLC Assay | *Asp TLC Assay | ||
*Asp Diffusion Assay (0.25% Agar) | *Asp Diffusion Assay (0.25% Agar) | ||
*Fumaric Acid (Fum) Sol. preparation | *Fumaric Acid (Fum) Sol. preparation | ||
*Sequencing | *Sequencing | ||
- | **①F⑤R<nowiki>#</nowiki>20-3-37-5 (from a non-red colony on the master plate) | + | <html>**①F⑤R<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html (from a non-red colony on the master plate) |
- | **②F⑥R<nowiki>#</nowiki>20-3-29-5 (<nowiki>#</nowiki>2-3-11-5?) | + | <html>**②F⑥R<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html<html> (<nowiki>#</nowiki><span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html?) |
- | **③F⑦R<nowiki>#</nowiki>3-27-5 | + | <html>**③F⑦R<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-<span class="part_num">5</span></html |
- | **④F⑧R<nowiki>#</nowiki>31 | + | <html>**④F⑧R<nowiki>#</nowiki><span class="part_num">31</span></html |
<html></div></html> | <html></div></html> | ||
<html><div class="labDay"></html> | <html><div class="labDay"></html> | ||
==='11/09/15(Thu)=== | ==='11/09/15(Thu)=== | ||
- | *Colony PCR(<nowiki>#</nowiki>19, <nowiki>#</nowiki>36-3-14-5-2-3-17-5-20-3-37-5 (failed), <nowiki>#</nowiki>20-3-29-5) | + | <html>*Colony PCR(<nowiki>#</nowiki><span class="part_num">19</span></html<html>, <nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span>-<span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html<html> (failed), <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html) |
- | *Miniprep(<nowiki>#</nowiki>20, <nowiki>#</nowiki>20-3-14-5-2-3-17-5, <nowiki>#</nowiki>3-14-5-2-3-17-5, <nowiki>#</nowiki>3-17-5) | + | <html>*Miniprep(<nowiki>#</nowiki><span class="part_num">20</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html) |
*Gel extraction | *Gel extraction | ||
- | **<nowiki>#</nowiki>3-14-5(failed), <nowiki>#</nowiki>3-17-5, <nowiki>#</nowiki>3-14-5-2-3-17-5, <nowiki>#</nowiki>1-3-14-5-2-3-17-5, <nowiki>#</nowiki>20-3-14-5-2-3-17-5 (EPcut); <nowiki>#</nowiki> | + | <html>**<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>(failed), <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">1</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html> (EPcut); <nowiki>#</nowiki><span class="part_num">20</span></html_SP |
*Making WT competent cell | *Making WT competent cell | ||
*Making LB plates(amp:39, cm:18) | *Making LB plates(amp:39, cm:18) | ||
- | *Culture for Miniprep(<nowiki>#</nowiki>3-11-5 (pSB1C3), <nowiki>#</nowiki>20-3-29-5, <nowiki>#</nowiki>19) | + | <html>*Culture for Miniprep(<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html<html> (pSB1C3), <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">19</span></html) |
*Ligation | *Ligation | ||
- | **sulAp(ES)-<nowiki>#</nowiki>3-14-5-2-3-17- | + | <html>**sulAp(ES)-<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html_XP-pSB1C3_PCR digest(EP) |
- | **recNp(ES)-<nowiki>#</nowiki>3-14-5-2-3-17- | + | <html>**recNp(ES)-<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html_XP-pSB1C3_PCR digest(EP) |
- | **<nowiki>#</nowiki>36-3-14-5-2-3-17- | + | <html>**<nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>_ES-<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html_XP-pSB1C3_PCR digest(EP) |
- | **<nowiki>#</nowiki>3-27- | + | <html>**<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-<span class="part_num">5</span></html<html>_XP-<nowiki>#</nowiki><span class="part_num">20</span></html_SP |
- | **<nowiki>#</nowiki>3-17- | + | <html>**<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html_EP-pSB1C3_PCR digest(EP) |
- | **<nowiki>#</nowiki>3-14- | + | <html>**<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html_EP-pSB1C3_PCR digest(EP) |
- | **<nowiki>#</nowiki>3-14-5-2-3-17- | + | <html>**<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html_EP-pSB1C3_PCR digest(EP) |
- | **<nowiki>#</nowiki>20-3-14-5-2-3-17- | + | <html>**<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html_EP-pSB1C3_PCR digest(EP) |
- | *Culture for Dual Luciferase Assay(<nowiki>#</nowiki>20-3-14-5-2-3-17-5) | + | <html>*Culture for Dual Luciferase Assay(<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html) |
*TLC check (LB, M9) | *TLC check (LB, M9) | ||
*Cell Diffusion Assay | *Cell Diffusion Assay | ||
Line 1,086: | Line 1,086: | ||
==='11/09/16(Fri)=== | ==='11/09/16(Fri)=== | ||
*Colony PCR | *Colony PCR | ||
- | **sulAp(ES)-<nowiki>#</nowiki>3-14-5-2-3-17- | + | <html>**sulAp(ES)-<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html_XP-pSB1C3_PCR digest(EP), |
- | **recNp(ES)-<nowiki>#</nowiki>3-14-5-2-3-17- | + | <html>**recNp(ES)-<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html_XP-pSB1C3_PCR digest(EP), |
- | **<nowiki>#</nowiki>36-3-14-5-2-3-17- | + | <html>**<nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>_ES-<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html_XP-pSB1C3_PCR digest(EP), |
- | **<nowiki>#</nowiki>3-27- | + | <html>**<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-<span class="part_num">5</span></html<html>_XP-<nowiki>#</nowiki><span class="part_num">20</span></html_SP, |
- | **<nowiki>#</nowiki>3-17- | + | <html>**<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html_EP-pSB1C3_PCR digest(EP), |
- | **<nowiki>#</nowiki>3-14- | + | <html>**<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html_EP-pSB1C3_PCR digest(EP), |
- | **<nowiki>#</nowiki>3-14-5-2-3-17- | + | <html>**<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html_EP-pSB1C3_PCR digest(EP), |
- | **<nowiki>#</nowiki>20-3-14-5-2-3-17- | + | <html>**<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html_EP-pSB1C3_PCR digest(EP) |
- | **<nowiki>#</nowiki>36-3-14-5-2-3-17- | + | <html>**<nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>_ES-<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html_XP-pSB1C3_PCR digest(EP) (retry; non-red colonies) |
- | *Miniprep(<nowiki>#</nowiki>3-11-5 (pSB1C3), <nowiki>#</nowiki>20-3-29-5, <nowiki>#</nowiki>19) | + | <html>*Miniprep(<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html<html> (pSB1C3), <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">19</span></html) |
- | *PCR amplification(<nowiki>#</nowiki>3-27-5, <nowiki>#</nowiki>36-3-14-5-2-3-17-5, pSB1C3) | + | <html>*PCR amplification(<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html, pSB1C3) |
- | *Sequencing prep(<nowiki>#</nowiki>20-3-29-5) | + | <html>*Sequencing prep(<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html) |
*Making agarose gel, WT competent cell, | *Making agarose gel, WT competent cell, | ||
*Electrophoresis check(pSB1C3_PCR) | *Electrophoresis check(pSB1C3_PCR) | ||
- | *Digest(pSB1C3_ES, pSB1C3_EP, <nowiki>#</nowiki>3-27- | + | <html>*Digest(pSB1C3_ES, pSB1C3_EP, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-<span class="part_num">5</span></html<html>_XP, <nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html_ES) |
*Dual luciferase assay | *Dual luciferase assay | ||
- | **<nowiki>#</nowiki>20-3-14-5-2-3-17-5 (1h, 1.5h culture)(IPTG 0, 1, 10, 100uM)(2.5mL) | + | <html>**<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html (1h, 1.5h culture)(IPTG 0, 1, 10, 100uM)(2.5mL) |
*Fumaric Acid (Fum) Sol. preparation | *Fumaric Acid (Fum) Sol. preparation | ||
**TLC test | **TLC test | ||
Line 1,112: | Line 1,112: | ||
==='11/09/17(Sat)=== | ==='11/09/17(Sat)=== | ||
*Colony PCR (retry) | *Colony PCR (retry) | ||
- | **<nowiki>#</nowiki>3-14-5, <nowiki>#</nowiki>3-17-5 (pSB1C3) | + | <html>**<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html (pSB1C3) |
- | **<nowiki>#</nowiki>36-3-14-5-2-3-17-5-20-3-37-5 | + | <html>**<nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span>-<span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html |
- | *Culture for Miniprep(<nowiki>#</nowiki>3-14-5, <nowiki>#</nowiki>3-17-5 (pSB1C3)) | + | <html>*Culture for Miniprep(<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html (pSB1C3)) |
- | *Ligation(sulAp-pSB1C3, recNp-pSB1C3, <nowiki>#</nowiki>20-<nowiki>#</nowiki>3-27-5) | + | <html>*Ligation(sulAp-pSB1C3, recNp-pSB1C3, <nowiki>#</nowiki><span class="part_num">20</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-<span class="part_num">5</span></html) |
- | *Transformation(<nowiki>#</nowiki>20-3-29-5 into cheZ-) | + | <html>*Transformation(<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html into cheZ-) |
*Making medium(.25% Agar. M9& LB each 20 plates) | *Making medium(.25% Agar. M9& LB each 20 plates) | ||
*Cell diffusion assay | *Cell diffusion assay | ||
Line 1,123: | Line 1,123: | ||
<html><div class="labDay"></html> | <html><div class="labDay"></html> | ||
==='11/09/18(Sun)=== | ==='11/09/18(Sun)=== | ||
- | *Colony PCR & Culture for Miniprep(<nowiki>#</nowiki>36-3-14-5-2-3-17-5-20-3-37-5, <nowiki>#</nowiki>33-3-14-5-2-3-17-5) | + | <html>*Colony PCR & Culture for Miniprep(<nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span>-<span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">33</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html) |
- | *Miniprep(<nowiki>#</nowiki>3-14-5, <nowiki>#</nowiki>3-17-5 (pSB1C3)) | + | <html>*Miniprep(<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html (pSB1C3)) |
- | *Ligation(<nowiki>#</nowiki>20-<nowiki>#</nowiki>3-27-5, recNp-<nowiki>#</nowiki>3-14-5-2-3-17-5, sulAp-pSB1C3, recNp-pSB1C3, <nowiki>#</nowiki>31- | + | <html>*Ligation(<nowiki>#</nowiki><span class="part_num">20</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-<span class="part_num">5</span></html<html>, recNp-<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>, sulAp-pSB1C3, recNp-pSB1C3, <nowiki>#</nowiki><span class="part_num">31</span>-</htmlpSB1C3) |
*Cell diffusion assay | *Cell diffusion assay | ||
**Innoculate colony(WT / cheZ-/- / cheZ-/- + cheZ plasmid) | **Innoculate colony(WT / cheZ-/- / cheZ-/- + cheZ plasmid) | ||
Line 1,133: | Line 1,133: | ||
<html><div class="labDay"></html> | <html><div class="labDay"></html> | ||
==='11/09/19(Mon)=== | ==='11/09/19(Mon)=== | ||
- | *Culture for Dual luciferase assay(<nowiki>#</nowiki>36-3-14-5-2-3-17-5-20-3-37-5, <nowiki>#</nowiki>33-3-14-5-2-3-17-5, <nowiki>#</nowiki>1-3-14-5-2-3-17-5, <nowiki>#</nowiki>20-3-14-5-2-3-17-5) | + | <html>*Culture for Dual luciferase assay(<nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span>-<span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">33</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">1</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html) |
- | *Miniprep(<nowiki>#</nowiki>36-3-14-5-2-3-17-5-20-3-37-5, <nowiki>#</nowiki>33-3-14-5-2-3-17-5) | + | <html>*Miniprep(<nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span>-<span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">33</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html) |
- | *Ligation(<nowiki>#</nowiki>24-<nowiki>#</nowiki>3-14-5-2-3-17-5, <nowiki>#</nowiki>20-<nowiki>#</nowiki>3-27-5) | + | <html>*Ligation(<nowiki>#</nowiki><span class="part_num">24</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-<span class="part_num">5</span></html) |
- | *Sequencing(<nowiki>#</nowiki>36-3-14-5-2-3-17-5-20-3-37-5, <nowiki>#</nowiki>33-3-14-5-2-3-17-5, <nowiki>#</nowiki>20-3-29-5) | + | <html>*Sequencing(<nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span>-<span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">33</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html) |
- | *Dual luciferase assay(<nowiki>#</nowiki>1~, <nowiki>#</nowiki>20~, <nowiki>#</nowiki>36~, <nowiki>#</nowiki>33~ ) | + | <html>*Dual luciferase assay(<nowiki>#</nowiki><span class="part_num">1</span></html<html>~, <nowiki>#</nowiki><span class="part_num">20</span></html<html>~, <nowiki>#</nowiki><span class="part_num">36</span></html<html>~, <nowiki>#</nowiki><span class="part_num">33</span></html~ ) |
*Asp racing assay(Innoculate colonies) | *Asp racing assay(Innoculate colonies) | ||
*GFP imaging assay<html></div></html> | *GFP imaging assay<html></div></html> | ||
Line 1,143: | Line 1,143: | ||
<html><div class="labDay"></html> | <html><div class="labDay"></html> | ||
==='11/09/20(Tue)=== | ==='11/09/20(Tue)=== | ||
- | *colony PCR(20-3-27-5, <nowiki>#</nowiki>24-3-14-5-2-3-17-5) | + | <html>*colony PCR(20-3-27-5, <nowiki>#</nowiki><span class="part_num">24</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html) |
- | *Gel extraction(<nowiki>#</nowiki>3-27- | + | <html>*Gel extraction(<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-<span class="part_num">5</span></html_XP) |
- | *PCR amplification -> Digest(<nowiki>#</nowiki> | + | <html>*PCR amplification -> Digest(<nowiki>#</nowiki><span class="part_num">29</span></html<html>_EP, <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html<html>_EP, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html_EP) |
- | *Digest(<nowiki>#</nowiki> | + | <html>*Digest(<nowiki>#</nowiki><span class="part_num">20</span></html_SP) |
*Sequencing prep. | *Sequencing prep. | ||
*Ethanol precipitation (10ul TE) | *Ethanol precipitation (10ul TE) | ||
- | **<nowiki>#</nowiki>3-11-5(pSB1C3): 144.5ng/uL | + | <html>**<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">11</span>-<span class="part_num">5</span></html(pSB1C3): 144.5ng/uL |
- | **<nowiki>#</nowiki>3-14-5: 728.0ng/uL | + | <html>**<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span></html: 728.0ng/uL |
- | **<nowiki>#</nowiki>3-17-5(pSB1C3): 505.7ng/uL | + | <html>**<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html(pSB1C3): 505.7ng/uL |
- | *Ligation(<nowiki>#</nowiki> | + | <html>*Ligation(<nowiki>#</nowiki><span class="part_num">31</span></html<html>_EP-pSB1C3_EP, <nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html<html>_ES-<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html_XP-pSB1C3_EP) |
*Luciferase assay | *Luciferase assay | ||
*Asp diffusion assay | *Asp diffusion assay | ||
Line 1,160: | Line 1,160: | ||
==='11/09/21(Wed)=== | ==='11/09/21(Wed)=== | ||
*Making plates | *Making plates | ||
- | *Gel extraction(<nowiki>#</nowiki> | + | <html>*Gel extraction(<nowiki>#</nowiki><span class="part_num">20</span></html<html>_SP, <nowiki>#</nowiki><span class="part_num">29</span></html<html>_EP, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html<html>_EP, <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html_EP) |
*Ligation | *Ligation | ||
- | **<nowiki>#</nowiki> | + | <html>**<nowiki>#</nowiki><span class="part_num">20</span></html<html>_SP-<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-<span class="part_num">5</span></html<html>_XP, <nowiki>#</nowiki><span class="part_num">24</span></html<html>_SP-<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>_XP, <nowiki>#</nowiki><span class="part_num">29</span></html<html>_EP-pSB1C3_EP, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html<html>_EP-pSB1C3_EP, <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html<html>_EP-pSB1C3_EP, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html_EP-pSB1C3_EP |
*Transformation | *Transformation | ||
- | **<nowiki>#</nowiki>36 from BioBrick? part | + | <html>**<nowiki>#</nowiki><span class="part_num">36</span></html from BioBrick? part |
- | **<nowiki>#</nowiki>33-3-14-5-2-3-17-5 into BL21 comp. | + | <html>**<nowiki>#</nowiki><span class="part_num">33</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html into BL21 comp. |
- | *Digest(<nowiki>#</nowiki>3-14-5-2-3-17- | + | <html>*Digest(<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>_SP, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>_ES, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html_ES) |
- | *Luciferase Assay(<nowiki>#</nowiki>36-3-14-5-2-3-17-5) | + | <html>*Luciferase Assay(<nowiki>#</nowiki><span class="part_num">36</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html) |
*Cell diffusion assay | *Cell diffusion assay | ||
<html></div></html> | <html></div></html> | ||
Line 1,174: | Line 1,174: | ||
==='11/09/22(Thu)=== | ==='11/09/22(Thu)=== | ||
*Ligation (retry) | *Ligation (retry) | ||
- | **#3-27- | + | <html>**<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-<span class="part_num">5</span></html<html>_XP-<nowiki>#</nowiki><span class="part_num">20</span></html<html>_SP, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span>-</html<html><nowiki>#</nowiki><span class="part_num">24</span></html<html>_SP, <nowiki>#</nowiki><span class="part_num">29</span></html<html>_EP-pSB1C3_EP, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html<html>_EP-pSB1C3_EP, <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html<html>_EP-pSB1C3_EP, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html_EP-pSB1C3_EP |
- | *Colony PCR(#36(->culture for mini prep), #33-3-14-5-2-3-17-5(->Maybe the amplification was failed)) | + | <html>*Colony PCR(<nowiki>#</nowiki><span class="part_num">36</span></html<html>(->culture for mini prep), <nowiki>#</nowiki><span class="part_num">33</span>-<span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html(->Maybe the amplification was failed)) |
- | *Gel extraction(#3-14-5-2-3-17- | + | <html>*Gel extraction(<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>_SP, _ES; <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html_ES) |
*Making plates | *Making plates | ||
**M9 0.25% Agar. +IPTG +Amp.: 20 | **M9 0.25% Agar. +IPTG +Amp.: 20 | ||
**LB Cm.: 20 | **LB Cm.: 20 | ||
*Ligation | *Ligation | ||
- | **#3-14-5-2-3-17- | + | <html>**<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>_SP-<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html_XP, |
- | **#3-14-5-2-3-17- | + | <html>**<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html<html>_ES-<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html_XP-pSB1C3, |
- | **#3-29- | + | <html>**<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html<html>_ES-<nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">37</span>-<span class="part_num">5</span></html_XP-pSB1C3_EP |
<html></div></html> | <html></div></html> | ||
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<html><div class="labDay"></html> | <html><div class="labDay"></html> | ||
==='11/09/26(Mon)=== | ==='11/09/26(Mon)=== | ||
- | *Ligation(#20-#3-27-5, #24-#3-14-5-2-3-17-5, recNp-3-14-5-2-3-17-5) | + | <html>*Ligation(<nowiki>#</nowiki><span class="part_num">20</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">27</span>-<span class="part_num">5</span></html<html>, <nowiki>#</nowiki><span class="part_num">24</span>-</html<html><nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">14</span>-<span class="part_num">5</span>-<span class="part_num">2</span>-<span class="part_num">3</span>-<span class="part_num">17</span>-<span class="part_num">5</span></html, recNp-3-14-5-2-3-17-5) |
*Digest(pSB1C3_ES) | *Digest(pSB1C3_ES) | ||
- | *Miniprep(#3-29-5-pSB1C3, #20-3-29-5-pSB1C3, #36) | + | <html>*Miniprep(<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span>-</html<html>pSB1C3, <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span>-</html<html>pSB1C3, <nowiki>#</nowiki><span class="part_num">36</span></html) |
- | *PCR amplification(pSB1A3, #3-29-5) | + | <html>*PCR amplification(pSB1A3, <nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span></html) |
- | *Ethanol precipitation(#3-29-5-pSB1C3, #20-3-29-5- | + | <html>*Ethanol precipitation(<nowiki>#</nowiki><span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span>-</html<html>pSB1C3, <nowiki>#</nowiki><span class="part_num">20</span>-<span class="part_num">3</span>-<span class="part_num">29</span>-<span class="part_num">5</span>-</htmlpSB1C3) |
<html></div></html> | <html></div></html> | ||
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// part description popup | // part description popup | ||
+ | /* | ||
$('div#labnote *').each(function() { | $('div#labnote *').each(function() { | ||
var $t = $(this); | var $t = $(this); | ||
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$t.html(txt); | $t.html(txt); | ||
}); | }); | ||
+ | */ | ||
var description = {}; | var description = {}; | ||
$('#partslist tr td:first-child').each(function() { | $('#partslist tr td:first-child').each(function() { |
Revision as of 17:13, 2 October 2011
Lab Note
iGEM UT-Tokyo
Parts List
Each part is represented by s number (e.g. #20 for lac promotor) in this notebook. We have also used this number in our hand-written lab notebook. By pointing the mouse on the number in the construct, you can find out the details of the part.
Number | Reg.ID | Content | Plasmid | Length (bp) |
---|---|---|---|---|
#1 | J23119 | c.Promoter (Strong) | pSB1A2 | 35 |
#2 | J23118 | c.Promoter (Medium) | BBa_J61002 | 35 |
#3 | B0032 | RBS | pSB1A2 | 13 |
#5 | B0014 | d.Ter | pSB1AK3 | 95 |
#9 | E0240 | RBS-GFP-d.Ter | pSB1A2 | 876 |
#10 | E0040 | GFP | pSB1A2 | 681 |
#11 | E1010 | RFP | pSB2K3 | 723 |
#14 | I712019 | fLuc | pSB1AK8 | 1653 |
#17 | J52008 | rLuc | pSB1AK3 | 936 |
#20 | R0011 | lacP | pSB1A2 | 55 |
#21 | C0012 | LacI | pSB1A2 | 1128 |
#22 | I712074 | pT7 | pSB1AK8 | 46 |
#23 | K145001 | T7 RNA Pol. | pSB1A2 | 2655 |
#24 | J22106 | recAp | pSB1A2 | 192 |
#27 | C0083 | AspA | pSB2K3 | 1518 |
#28 | K112808 | T4 phage lysis device (no promoter) | pSB1A2 | 1785 |
#29 | - | CheZ | pSB1AK3 | 728 |
#30 | K117000 | Lysis gene | pSB1A2 | 144 |
#31 | - | LexA | pSB1AK3 | 750 |
#33 | - | sulAp | pSB1AK3 | 67 |
#34 | - | uvrAp | pSB1AK3 | 96 |
#35 | - | recNp | ||
#36 | R0051 | cI-repressed promoter | pSB1A2 | 49 |
#37 | C0051 | cI repressor (LVA tagged) | pSB1A2 | \ |
#38 | - | RecA |
Lab Diary
- May
- June
- July
- August
- September
- October
Please enable Javascript to view this calendar.
May
'11/05/18 (Wed)
- Making LB medium, 50×TAE, Tris-HCl (pH8.0)
'11/05/24 (Tue)
- Making SOB medium, 0.5M EDTA (pH8.0)
'11/05/25(Wed)
- Making TB(pH=6.7), LB plate
'11/05/26(Thu)
- Making Mgaq(for SOB medium), Competent cell
- TB filtration
'11/05/31(Tue)
- iGEM parts resuspension + frozen stock (at -20℃)
- Transformation
- Overnight culture on LB plate (with 100ug/ml ampicilline)
June
'11/06/01(Wed)
- Picking up colony and transfer to LB medium
- Making LB medium
'11/06/02(Thu)
- Miniprep
- Making Glycerol(50%)(for cryopreservation)
'11/06/07(Tue)
- Nanodrop
- Transformation
- Culture from frozen stock
'11/06/08(Wed)
- Picking up colony
'11/06/09(Thu)
- Miniprep
'11/06/13(Mon)
- Planting Negative control
- Making frozen stock
*Transformation(BBa_E0240,