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Team:Arizona State/Project/Software
From 2011.igem.org
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| - | {{:Team:Arizona State/Templates/main|title= | + | {{:Team:Arizona State/Templates/main|title=CRISPRstudio|content= |
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[[File:ASU crisprstudio ss.jpg|thumb|CRISPR information panel of the CRISPRstudio]] | [[File:ASU crisprstudio ss.jpg|thumb|CRISPR information panel of the CRISPRstudio]] | ||
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* Display and gather CRISPR information using a database cultivated from several sources. | * Display and gather CRISPR information using a database cultivated from several sources. | ||
| - | '''Downloads | + | '''Downloads''' |
---- | ---- | ||
| - | * Python source: [http://code.google.com/p/crispr-studio/ | + | * Python source: [http://code.google.com/p/crispr-studio/ CRISPRstudio at GoogleCode] |
| + | :* See '''Source''' for details. | ||
| + | * Executable: [http://code.google.com/p/crispr-studio/downloads/detail?name=CRISPRstudio-r52b-win.zip Windows] | ||
| + | :* Dependencies: BLAST+ 2.2.25 or compatible. | ||
| + | |||
| + | '''Installation''' | ||
| + | ---- | ||
| + | <p>Using the provided binaries is the fastest way to get started with CRISPRstudio. Visit our GoogleCode page and select the downloads tab. Download the appropriate build based on your OS. All builds are provided for x87 platforms. For x64 real support, you will need to run the source directly. x64 support has not shown significant speed increases | ||
| + | for CRISPRstudio.</p> | ||
| + | |||
| + | <p>Extract the compressed file to some location. You also need to download [ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/LATEST/ BLAST+ 2.2.25] or compatible. BLAST+ must be installed and included in the system path. On most systems, the BLAST+ installer will take care of this. After this, you may run MainFrame to start the program.</p> | ||
| + | |||
| + | '''Source''' | ||
| + | ---- | ||
| + | *something | ||
:* Dependencies: BioPython, NumPy, WxPython, BLAST+ | :* Dependencies: BioPython, NumPy, WxPython, BLAST+ | ||
| - | |||
| - | '''Sources''' | + | '''Interface''' |
| + | ---- | ||
| + | |||
| + | '''Data Sources''' | ||
---- | ---- | ||
* [http://crispr.u-psud.fr/crispr/ CrisprDB] | * [http://crispr.u-psud.fr/crispr/ CrisprDB] | ||
* [http://cmr.jcvi.org/tigr-scripts/CMR/CmrHomePage.cgi JCVI CMR] | * [http://cmr.jcvi.org/tigr-scripts/CMR/CmrHomePage.cgi JCVI CMR] | ||
* [http://crispi.genouest.org/ CRISPI] | * [http://crispi.genouest.org/ CRISPI] | ||
| - | * NCBI | + | * [ftp://ftp.ncbi.nih.gov/genomes/genomeprj/ NCBI] |
| + | |||
}} | }} | ||
Revision as of 23:58, 27 September 2011
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  We have developed a tool to assist in the development of synthetic CRISPR systems.
Downloads
Installation Using the provided binaries is the fastest way to get started with CRISPRstudio. Visit our GoogleCode page and select the downloads tab. Download the appropriate build based on your OS. All builds are provided for x87 platforms. For x64 real support, you will need to run the source directly. x64 support has not shown significant speed increases for CRISPRstudio. Extract the compressed file to some location. You also need to download BLAST+ 2.2.25 or compatible. BLAST+ must be installed and included in the system path. On most systems, the BLAST+ installer will take care of this. After this, you may run MainFrame to start the program. Source
Interface Data Sources
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