Team:Washington/Magnetosomes/Magnet Results

From 2011.igem.org

Revision as of 00:24, 27 September 2011

What’s in the Magnetosome Toolkit?

• Our favorite genes in pGA vectors
• A set of the 18 essential genes for the various steps of magnetosome formation
• A table compiling individual gene functions from our literature search

Our favorite genes in pGA vectors: Magnetosome gene-protein Fusions

As previously stated, our genes of interest were mamK and mamI as they have functions related to localization of the magnetosome. Specifically, mamK is a bacterial actin-like cytoskeleton protein required for proper alignment of the magnetosomes in a chain. mamK is also shown to localize the mamI, which is loss inhibits membrane formation. (for other gene functions, please see the iGEM Toolkits parts submitted page)Using our two genes of interest, we created C-terminal sfGFP fusions so we could track the localization of each gene separately within E.coli.

The results we obtained with our sfGFP fusions inside E.coli were comparable to those done through other studies in the host organism Magnetospirillum magneticum. In the image of mamK, a filament is seen running through the length of many bacteria. For mamI, the gene product is seen to fluoresce around the cell membrane of the bacteria but mostly concentrated at the ends. Similarly, the graph shows that as the arrow cross the cell membrane, the fluorescent peaks are at a maximum, and through the center of the cell, the level of fluorescence decreases.

Construction of the R5 region of the Magnetosome Island in E.coli

After identifying that the construction of the scaffold had worked, we proceeded to work on the final assembly in three parts: mamHIEJKK, mamMNOPA, and mamQRBSTUV. The PCR products of the first, and the third part of the assembly are shown below. Both fragments of the assembly have been partially sequenced confirmed, and we are currently working on designing primers to fill in the gap sequences. Despite these gaps, when this samples were imaged, filaments in the first part (mamHIEJKL)were still apparent.

:

A set of the 18 essential genes for the various steps of magnetosome formation

Before piecing together the 16 kb genome of the mamAB gene cluster within the magnetosome island (MAI), we extracted out the genes in the following groups:

Gel Extracts of Individual Magnetosome Genes

A table of individual gene functions

Please see the bottom of our parts submitted page.