Team:UC Davis/Data LacI

From 2011.igem.org

(Difference between revisions)
Line 21: Line 21:
<h1 id="widget">LacI Promoter Characterization Data</h1>
<h1 id="widget">LacI Promoter Characterization Data</h1>
<div id="mutantwidget" class="floatbox2">
<div id="mutantwidget" class="floatbox2">
-
<h3>Wildtype</h3>
+
<h3>Wild-type</h3>
<span class="sequence">caatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagctggcacgacaggtttcccgactggaaagcgggcagtgagcgcaacgcaattaatgtgagttagctcactcattaggcaccccaggctttacactttatgcttccggctcgtatgttgtgtggaattgtgagcggataacaatttcacaca</span>
<span class="sequence">caatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagctggcacgacaggtttcccgactggaaagcgggcagtgagcgcaacgcaattaatgtgagttagctcactcattaggcaccccaggctttacactttatgcttccggctcgtatgttgtgtggaattgtgagcggataacaatttcacaca</span>
<span class="xdata">0, .0014, .0028, .0042, .0056, .0070, .0140</span>
<span class="xdata">0, .0014, .0028, .0042, .0056, .0070, .0140</span>
-
<span class="ydata">0.99526, 0.78158, 0.58477, 0.45672, 0.35532, 0.29209, 0.13345</span>
+
<span class="ydata">0.99353, 0.78661, 0.61233, 0.48347, 0.40302, 0.31833, 0.17311</span>
-
<span class="stdevs">.011467, .0071189, .0065993, .0036017, .0039123, .0052821, .002310</span>
+
<span class="stdevs">0.0031579, 0.0052541, 0.0059555, 0.0069092, 0.0041919, 0.0052347, 0.0024241</span>
<span class="numconditions">4</span>
<span class="numconditions">4</span>
<span class='xdata_3d'>0, 1, 2.5, 5</span>
<span class='xdata_3d'>0, 1, 2.5, 5</span>
<span class='ydata_3d'>0.00000,  0.0014,  0.0028,  0.0042,  0.0056,  .0070,  .0140</span>
<span class='ydata_3d'>0.00000,  0.0014,  0.0028,  0.0042,  0.0056,  .0070,  .0140</span>
<span class='zdata_3d'>
<span class='zdata_3d'>
-
   0.99526,  1.02200,  1.01170,  1.00010,
+
   0.99353,  1.02920,  1.05770,  1.12136,
-
   0.78158,  0.96500,  0.96048,  0.96635,
+
   0.78661,  1.00142,  1.02352,  1.06377,
-
   0.58477,  0.86644,  0.90108,  0.94697,
+
   0.61233,  0.90829,  0.95385,  1.06676,
-
   0.45672,  0.76017,  0.84753,  0.93378,
+
   0.48347,  0.77363,  0.85365,  0.99591,
-
   0.35532,  0.65008,  0.75416,  0.88239,
+
   0.40302,  0.67853,  0.74660,  0.93119,
-
   0.29209,  0.55508,  0.68248,  0.84240,
+
   0.31833,  0.56058,  0.62386,  0.83851,
-
   0.13345,  0.26846,  0.36957,  0.55320</span>
+
   0.17311,  0.33178,  0.40330,  0.58631</span>
<span class='stdevs_3d'>
<span class='stdevs_3d'>
-
   0.011467,   0.010442, 0.010839,  0.024469,
+
   0.0031579,   0.0078785,   0.0087252,  0.0491108,
-
   0.0071189,  0.0073681,  0.0089198,  0.046725,
+
   0.0052541,  0.0065114,  0.0028587,  0.0289843,
-
   0.0065993,  0.0078138,  0.02959,  0.038586,
+
   0.0059555,  0.0047101,  0.0029583,  0.0241440,
-
   0.0036017,  0.0089795,  0.0078016,  0.029437,
+
   0.0069092,  0.0036622,  0.0052977,  0.0270465,
-
   0.0039123,  0.0081117,  0.0073816,  0.019615,
+
   0.0041919,  0.0042828,  0.0210219,  0.0054843,
-
   0.0052821,  0.0041085,  0.005162,  0.026833,
+
   0.0052347,  0.0067734,  0.0282990,  0.0027105,
-
   0.002310,   0.0034424,  0.0049376,  0.021629</span>
+
   0.0024241,   0.0038951,  0.0043371,  0.0029370</span>
    
    
<h3>Mutant 1</h3>
<h3>Mutant 1</h3>
Line 193: Line 193:
<span class="sequence">caatacgcaaaccgcctctccccgcgcgttggccgattcattagtgcagctggcacgacaggtttcccgactggaaagcgggcagtgagcgcaacgcaattaatgtgagttagctcactcattaggcaccccaggctttacactttatgcttccggctcgtatgtagtgtggaattgtgagcggatatcaatttcacaca</span>
<span class="sequence">caatacgcaaaccgcctctccccgcgcgttggccgattcattagtgcagctggcacgacaggtttcccgactggaaagcgggcagtgagcgcaacgcaattaatgtgagttagctcactcattaggcaccccaggctttacactttatgcttccggctcgtatgtagtgtggaattgtgagcggatatcaatttcacaca</span>
<span class="xdata">0, .0014, .0028, .0042, .0056, .0070, .0140</span>
<span class="xdata">0, .0014, .0028, .0042, .0056, .0070, .0140</span>
-
<span class="ydata">0.62258, 0.34613, 0.1964, 0.10312, 0.059097, 0.040523, 0.017136</span>
+
<span class="ydata">0.85845, 0.62076, 0.43628, 0.30625, 0.24044, 0.19269, 0.10768</span>
-
<span class="stdevs">.028583, .023882, .0053691, .0091167, .0048725, .0014242, .00023627</span>
+
<span class="stdevs">.0.0224439, 0.0111706, 0.0095075, 0.0129382, 0.0093905, 0.0026913, 0.0024300</span>
-
<!-- 3D DATA GOES HERE AS SOON AS WE HAVE IT!
+
<span class='xdata_3d'>0, 1, 2.5, 5</span>
-
<span class='xdata_3d'></span>
+
<span class='ydata_3d'>0.00000,  0.0014,  0.0028,  0.0042,  0.0056,  .0070,  .0140</span>
-
<span class='ydata_3d'></span>
+
<span class='zdata_3d'>
-
<span class='zdata_3d'></span>
+
  0.85845,  0.90713,  0.94177,  0.95054,
-
<span class='stdevs_3d'></span>
+
  0.62076,  0.83675,  0.93042,  0.92862,
-
--!>
+
  0.43628,  0.67716,  0.87094,  0.94269,
 +
  0.30625,  0.51206,  0.77736,  0.88470,
 +
  0.24044,  0.40324,  0.60534,  0.82591,
 +
  0.19269,  0.31550,  0.49199,  0.78601,
 +
  0.10768,  0.17867,  0.24798,  0.50439</span>
 +
<span class='stdevs_3d'>
 +
  0.0224439,  0.0223095,  0.0293059,  0.0159658,
 +
  0.0111706,  0.0105817,  0.0186839,  0.0148995,
 +
  0.0095075,  0.0107458,  0.0224771,  0.0174710,
 +
  0.0129382,  0.0081189,  0.0091454,  0.0513437,
 +
  0.0093905,  0.0053745,  0.0250836,  0.0373250,
 +
  0.0026913,  0.0038961,  0.0073887,  0.0121860,
 +
  0.0024300,  0.0021880,  0.0027920,  0.0059692</span>
 +
 
</div>
</div>
</div>
</div>

Revision as of 02:09, 26 September 2011

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Criteria

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LacI Promoter Characterization Data

Wild-type

caatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagctggcacgacaggtttcccgactggaaagcgggcagtgagcgcaacgcaattaatgtgagttagctcactcattaggcaccccaggctttacactttatgcttccggctcgtatgttgtgtggaattgtgagcggataacaatttcacaca 0, .0014, .0028, .0042, .0056, .0070, .0140 0.99353, 0.78661, 0.61233, 0.48347, 0.40302, 0.31833, 0.17311 0.0031579, 0.0052541, 0.0059555, 0.0069092, 0.0041919, 0.0052347, 0.0024241 4 0, 1, 2.5, 5 0.00000, 0.0014, 0.0028, 0.0042, 0.0056, .0070, .0140 0.99353, 1.02920, 1.05770, 1.12136, 0.78661, 1.00142, 1.02352, 1.06377, 0.61233, 0.90829, 0.95385, 1.06676, 0.48347, 0.77363, 0.85365, 0.99591, 0.40302, 0.67853, 0.74660, 0.93119, 0.31833, 0.56058, 0.62386, 0.83851, 0.17311, 0.33178, 0.40330, 0.58631 0.0031579, 0.0078785, 0.0087252, 0.0491108, 0.0052541, 0.0065114, 0.0028587, 0.0289843, 0.0059555, 0.0047101, 0.0029583, 0.0241440, 0.0069092, 0.0036622, 0.0052977, 0.0270465, 0.0041919, 0.0042828, 0.0210219, 0.0054843, 0.0052347, 0.0067734, 0.0282990, 0.0027105, 0.0024241, 0.0038951, 0.0043371, 0.0029370

Mutant 1

caatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagctggcacgacaggtttcccgactggaaagcgggcagtgagcgcaacgcaattaatgtgagttagctcactcattaggcaccccaggctttacactttatgcttccggctcgtatgttgtgtggaattgtgagcggataacaatttcacaca 0, .0014, .0028, .0042, .0056, .0070, .0140 0.84293, 0.52501, 0.28185, 0.14559, 0.082367, 0.05077, 0.017707 .017132, .016563, .010138, .0083723, .0036696, .0013295, .00029933 0, 1, 2.5, 5 0.00000, 0.0014, 0.0028, 0.0042, 0.0056, .0070, .0140 0.84293, 0.87306, 0.88569, 0.88705, 0.52501, 0.73231, 0.85955, 0.86384, 0.28185, 0.49594, 0.754, 0.85027, 0.14559, 0.30866, 0.53435, 0.79143, 0.082367, 0.20109, 0.38603, 0.6632, 0.05077, 0.13482, 0.28296, 0.59708, 0.017707, 0.062278, 0.080463, 0.22066 0.017132, 0.017727, 0.020661, 0.014524, 0.016563, 0.0095391, 0.013332, 0.024361, 0.010138, 0.017069, 0.017257, 0.019877, 0.0083723, 0.0064858, 0.006745, 0.035387, 0.0036696, 0.0024604, 0.014455, 0.017886, 0.0013295, 0.0017976, 0.0039159, 0.011506, 0.00029933, 0.0014914, 0.00096534, 0.0054255

Mutant 2

caatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagctggcacgacaggtttcccgactggaaagcgggcagtgagcgcaacgcaattattgtgagttagctcactcattaggcaccccaggctttacactttatgcttccggctcgtatgttgtgtggaattgtgagcggataacaatttcacgca 0, .0014, .0028, .0042, .0056, .0070, .0140 0.66043, 0.44899, 0.27847, 0.19007, 0.14271, 0.11669, 0.061421 .018716, .015384, .0098251, .011268, .0061044, .0030215, .0008294 0, 1, 2.5, 5 0.00000, 0.0014, 0.0028, 0.0042, 0.0056, .0070, .0140 0.66043, 0.72139, 0.72156, 0.68292, 0.44899, 0.6366, 0.71926, 0.69494, 0.27847, 0.45878, 0.63883, 0.68131, 0.19007, 0.33367, 0.48602, 0.61718, 0.14271, 0.2557, 0.3774, 0.53217, 0.11669, 0.19954, 0.29437, 0.4718, 0.061421, 0.096767, 0.1356, 0.25018 0.018716, 0.012137, 0.012946, 0.017598, 0.015384, 0.012073, 0.011769, 0.010884, 0.0098251, 0.014087, 0.005962, 0.016007, 0.011268, 0.010077, 0.0063601, 0.032621, 0.0061044, 0.010882, 0.0061672, 0.029959, 0.0030215, 0.0073785, 0.00397, 0.01491, 0.0008294, 0.0070557, 0.0015888, 0.0026091

Mutant 3

caatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagctggcacgacaggtttcccgactggaaagcgggcagtgagcgcaacgcaattaaagtgagttagctcactcattaggcaccccaggctttacactttaagcttccggctcgtatgttgtgtggaattgtgagcggataacaatttcacaca 0, .0014, .0028, .0042, .0056, .0070, .0140 0.63328, 0.35345, 0.1976, 0.1104, 0.065516, 0.042821, 0.014963 .033565, .014178, .0098194, .011065, .0057402, .0026293, .00076312 0, 1, 2.5, 5 0.00000, 0.0014, 0.0028, 0.0042, 0.0056, .0070, .0140 0.63328, 0.69271, 0.71026, 0.75696, 0.35345, 0.51328, 0.67568, 0.7587, 0.1976, 0.3267, 0.50067, 0.70773, 0.1104, 0.20677, 0.33992, 0.52743, 0.065516, 0.13261, 0.23971, 0.41148, 0.042821, 0.085832, 0.16709, 0.35498, 0.014963, 0.022957, 0.035527, 0.12963 0.033565, 0.036371, 0.039807, 0.021793, 0.014178, 0.0060065, 0.023267, 0.019054, 0.0098194, 0.0058528, 0.0066284, 0.015857, 0.011065, 0.0034758, 0.0039971, 0.064364, 0.0057402, 0.0017609, 0.0055395, 0.040444, 0.0026293, 0.0013106, 0.0046305, 0.012042, 0.00076312, 0.00032783, 0.00066923, 0.0016036

Mutant 4

caatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagctggcacgacaggtttcccgactggaaagcgggcagtgcgcgcaacgcaactaatgtgagttagctcactcattaggcaccccaggctttacactttatgcttccggctcgtatgttgtgtggaattgtgagcggataacaatttcacgca 0, .0014, .0028, .0042, .0056, .0070, .0140 0.31767, 0.17005, 0.10219, 0.063898, 0.045055, 0.034767, 0.017343 .010988, .0044378, .0031212, .004087, .0025152, .00043641, .00020276 0, 1, 2.5, 5 0.00000, 0.0014, 0.0028, 0.0042, 0.0056, .0070, .0140 0.31767, 0.34757, 0.3608, 0.34776, 0.17005, 0.25419, 0.33186, 0.33032, 0.10219, 0.17489, 0.26515, 0.31199, 0.063898, 0.1182, 0.19703, 0.26871, 0.045055, 0.082478, 0.14751, 0.21937, 0.034767, 0.060288, 0.10815, 0.18865, 0.017343, 0.023308, 0.030312, 0.080942 0.010988, 0.010027, 0.012595, 0.013208, 0.0044378, 0.0050367, 0.007641, 0.0075742, 0.0031212, 0.005471, 0.0023857, 0.0096344, 0.004087, 0.0019016, 0.006205, 0.020668, 0.0025152, 0.0020285, 0.0039214, 0.012822, 0.00043641, 0.00055117, 0.0010622, 0.003141, 0.00020276, 0.00023033, 0.0010985, 0.0010405

Mutant 5

caatacgcaaaccgcctctccccgcgcgtcggccgattcattaatgcagctggcacgacaggtttcccgactggaaagcgggcagtgagcgcaacgcaattaatgtgagttagctccctcatcaggcaccccaggctttacactttatgcttccggctcgtatgttgtgtggaattgtgagcggataacaatttcacaca 0, .0014, .0028, .0042, .0056, .0070, .0140 0.76419, 0.45666, 0.25652, 0.16829, 0.11854, 0.093686, 0.054054 .032442, .013252, .012617, .0085441, .005527, .0017459, .00062193 0, 1, 2.5, 5 0.00000, 0.0014, 0.0028, 0.0042, 0.0056, .0070, .0140 0.76419, 0.80169, 0.82451, 0.85141, 0.45666, 0.68378, 0.8154, 0.86986, 0.25652, 0.43459, 0.66544, 0.83262, 0.16829, 0.29358, 0.48126, 0.69943, 0.11854, 0.20404, 0.34253, 0.59125, 0.093686, 0.14943, 0.25307, 0.51915, 0.054054, 0.067506, 0.085897, 0.21106 0.032442, 0.043917, 0.042233, 0.0095133, 0.013252, 0.0084313, 0.023269, 0.01513, 0.012617, 0.0056627, 0.0086734, 0.017897, 0.0085441, 0.003882, 0.0078432, 0.052522, 0.005527, 0.0025057, 0.0039495, 0.039797, 0.0017459, 0.0017848, 0.0035247, 0.011518, 0.00062193, 0.0012843, 0.0010686, 0.002401

Mutant 6

caatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagctggcacgacaggtttcccgactggaaagcgggcagtgagcgcaacgcaattaatgtgagttagctcactcattaggcaccccaggctctacactttatgcttccggcttgtatgttgtgtggaattgtgagcggataacaatttcacaca 0, .0014, .0028, .0042, .0056, .0070, .0140 0.55751, 0.39467, 0.26512, 0.17411, 0.12033, 0.086001, 0.036371 .0075946, .005595, .0042456, .00568, .0048842, .002313, .00049314 0, 1, 2.5, 5 0.00000, 0.0014, 0.0028, 0.0042, 0.0056, .0070, .0140 0.55751 0.56255 0.56785 0.58454 0.39467 0.4926 0.56662 0.562 0.26512 0.37128 0.50313 0.57582 0.17411 0.27137 0.39351 0.53095 0.12033 0.20031 0.30487 0.46169 0.086001 0.14549 0.23471 0.39465 0.036371 0.058668 0.095081 0.21265 0.0075946, 0.017581, 0.014201, 0.005585, 0.005595, 0.0047018, 0.012246, 0.022603, 0.0042456, 0.0035865, 0.0081421, 0.0054892, 0.00568, 0.0027604, 0.0041534, 0.013642, 0.0048842, 0.0017498, 0.0031374, 0.016814, 0.002313, 0.0013403, 0.0029052, 0.003605, 0.00049314, 0.00084767, 0.00089771, 0.0015101

Mutant 7

caatacgcaaaccgcctctccccgcgcgttggccgattcattagtgcagctggcacgacaggtttcccgactggaaagcgggcagtgagcgcaacgcaattaatgtgagttagctcactcattaggcaccccaggctttacactttatgcttccggctcgtatgtagtgtggaattgtgagcggatatcaatttcacaca 0, .0014, .0028, .0042, .0056, .0070, .0140 0.85845, 0.62076, 0.43628, 0.30625, 0.24044, 0.19269, 0.10768 .0.0224439, 0.0111706, 0.0095075, 0.0129382, 0.0093905, 0.0026913, 0.0024300 0, 1, 2.5, 5 0.00000, 0.0014, 0.0028, 0.0042, 0.0056, .0070, .0140 0.85845, 0.90713, 0.94177, 0.95054, 0.62076, 0.83675, 0.93042, 0.92862, 0.43628, 0.67716, 0.87094, 0.94269, 0.30625, 0.51206, 0.77736, 0.88470, 0.24044, 0.40324, 0.60534, 0.82591, 0.19269, 0.31550, 0.49199, 0.78601, 0.10768, 0.17867, 0.24798, 0.50439 0.0224439, 0.0223095, 0.0293059, 0.0159658, 0.0111706, 0.0105817, 0.0186839, 0.0148995, 0.0095075, 0.0107458, 0.0224771, 0.0174710, 0.0129382, 0.0081189, 0.0091454, 0.0513437, 0.0093905, 0.0053745, 0.0250836, 0.0373250, 0.0026913, 0.0038961, 0.0073887, 0.0121860, 0.0024300, 0.0021880, 0.0027920, 0.0059692
Some preliminary data. These are LacI promoter mutants. The green bars represent mutants that are outside of 1.5 standard deviations of wildtype LacI promoter. There's still more to come!

Retrieved from "http://2011.igem.org/Team:UC_Davis/Data_LacI"