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Team:UPO-Sevilla/Foundational Advances/BioBrick Creator
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<h1>BioBrick Creator</h1> | <h1>BioBrick Creator</h1> | ||
| - | + | Cartel | |
| + | |||
| + | <p>This new tool is designed to help and make accessible to everyone the process of creating and designing BioBricks. This program has three main modules: </p> | ||
| + | Modulos | ||
| + | video | ||
| + | |||
| + | <p><strong>Main features and built-in options:</strong></p> | ||
| + | <p>All features in the application include help buttons to guide users through all the modules. | ||
| + | All the resulting sequences have been optimized to provide the user with a useful experience.</p> | ||
| + | <br/><p><strong>Module I Creating a new BioBrick:</strong> | ||
| + | <ul> | ||
| + | <li><p>Text (.txt) files reading (no sequence text must be deleted from the file).</p></li> | ||
| + | <li><p>Fasta files reading (in case of multifasta files the first sequence is chosen by default).</p></li> | ||
| + | <li><p>Built-in whole sequence codon optimisation option for the main model organisms in synthetic biology.</p></li> | ||
| + | <li><p>All the results can be saved in a text (.txt) file with all the required information for being added to the parts registry.</p></li> | ||
| + | <li><p>Resulting sequence can also be saved in a fasta file.</p></li></ul> | ||
| + | |||
| + | |||
| + | <p><strong>Module II Assembly parts:</strong></p> | ||
| + | <ul> | ||
| + | <li><p>Full integration with fasta and text files from Module I.</p></li> | ||
| + | <li><p>Possibility of uploading more BioBricks created with the program.</p></li></ul> | ||
| + | |||
| + | <p><strong>Module III Plasmid Backbone:</strong></li> | ||
| + | <ul> | ||
| + | <li><p>Possibility of choosing between all well characterised (part assembly, system operation and DNA synthesis) plasmids available at the iGEM database.</p></li></ul> | ||
| + | <br/><p><strong>Future updates:</strong></p> | ||
| + | <ul> | ||
| + | <li><p>Conversion of the whole system to a web-based application.</p></li> | ||
| + | <li><p>Integration with the iGEM database to help the user experience.</p></li> | ||
| + | <li><p>Design improvement.</p></li></ul> | ||
| + | |||
| + | <br/><p><strong>System Requirements:<p></strong> | ||
| + | <a href="http://java.com/es/download/">Java Version 6 Update 27</a> | ||
| + | |||
</div> | </div> | ||
Revision as of 18:09, 19 September 2011
BioBrick Creator
CartelThis new tool is designed to help and make accessible to everyone the process of creating and designing BioBricks. This program has three main modules:
Modulos videoMain features and built-in options:
All features in the application include help buttons to guide users through all the modules. All the resulting sequences have been optimized to provide the user with a useful experience.
Module I Creating a new BioBrick:
Text (.txt) files reading (no sequence text must be deleted from the file).
Fasta files reading (in case of multifasta files the first sequence is chosen by default).
Built-in whole sequence codon optimisation option for the main model organisms in synthetic biology.
All the results can be saved in a text (.txt) file with all the required information for being added to the parts registry.
Resulting sequence can also be saved in a fasta file.
Module II Assembly parts:
Full integration with fasta and text files from Module I.
Possibility of uploading more BioBricks created with the program.
Module III Plasmid Backbone:
Possibility of choosing between all well characterised (part assembly, system operation and DNA synthesis) plasmids available at the iGEM database.
Future updates:
Conversion of the whole system to a web-based application.
Integration with the iGEM database to help the user experience.
Design improvement.
System Requirements: Java Version 6 Update 27
Sponsors
