Team:Imperial College London/Project Chemotaxis Specifications

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<h1>Specifications</h1>
<h1>Specifications</h1>
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<p>The chemotaxis module is responsible for ensuring that our bacteria move towards roots. For this, the bacteria need to be able to sense a common root exudate. We have chosen <i>E. coli</i> chemotaxis to be rewired towards malic acid (also referred to as malate), a compound found in the TCA cycle. It is released from the roots at low concentrations. Since our chassis, <i>Escherichia coli</i> does not normally exhibit chemotaxis towards malate, we needed to engineer a malate-responsive sensor into the microbes that will enable them to perform chemotaxis towards roots.</p>
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<p><b>1. The bacteria should actively move towards roots.</b>
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<p>Following chemotaxis towards the roots, our bacteria should be taken up into the roots. We want the bacteria to get taken up into the plant roots to ensure that the concentration of indole-3-acetic acid (IAA) in the plant is increased. If the bacteria remained outside the roots, this goal may also be reached but it may be harder to increase internal IAA concentration. In addition, uptake of bacteria into the roots followed by secretion of chemicals presents a novel platform for modifying plants without genetically modifying the plant genomes.
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In a paper published last year, Paungfoo-Lonhienne et al. showed that <i>Arabidopsis</i> and tomato plants are able to actively break down their cell wall to take up GFP-tagged <i>E. coli</i> and <i>S. cerevisiae</i> and use them as a source of nutrients. </p>
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<li><p>In order to do this, the bacteria need to be able to sense a common root exudate. We have chosen to rewire <i>E. coli</i>'s chemotactic pathway towards L(-)malic acid (also referred to as malate), a compound found in the Citric acid cycle. It is secreted by the roots at low concentrations.  
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<p><b>2. Uptake of bacteria into roots.</b>
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<li><p> Uptake of bacteria into the roots followed by the secretion of natural chemicals presents a novel platform for modifying plants without genetically modifying the plant genomes.</p>
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<p><b>3. Efficient expression of foreign genes in our chassis.</b>
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<li><p> Since we are introducing genes from soil bacteria into <i>E. coli </i> we have to take into account the effect that codon bias can play in the expression of our constructs. Therefore, we have to ensure that expression of our construct is not constrained by this phenomenon.</p>
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<a href="https://2011.igem.org/Team:Imperial_College_London/Project_Chemotaxis_Overview" style="text-decoration:none;color:#728F1D;float:left;">
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<img src="https://static.igem.org/mediawiki/2011/8/8e/ICL_PreviousBtn.png" width="40px" style="float;left;"/>
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M1: Overview
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<a href="https://2011.igem.org/Team:Imperial_College_London/Project_Chemotaxis_Design" style="text-decoration:none;color:#728F1D;float:right;">
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M1: Design
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<img src="https://static.igem.org/mediawiki/2011/9/90/ICL_NextBtn.png" width="40px" style="float;right;"/>
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Latest revision as of 01:45, 29 October 2011



Module 1: Phyto-Route

Chemotaxis is the movement of bacteria based on attraction or repulsion of chemicals. Roots secrete a variety of compounds that E. coli are not attracted to naturally. Accordingly, we engineered a chemoreceptor into our chassis that can sense malate, a common root exudate, so that it can swim towards the root. Additionally, E. coli are actively taken up by plant roots, which will allow targeted IAA delivery into roots by our system.





Specifications

1. The bacteria should actively move towards roots.

  • In order to do this, the bacteria need to be able to sense a common root exudate. We have chosen to rewire E. coli's chemotactic pathway towards L(-)malic acid (also referred to as malate), a compound found in the Citric acid cycle. It is secreted by the roots at low concentrations.

2. Uptake of bacteria into roots.

  • Uptake of bacteria into the roots followed by the secretion of natural chemicals presents a novel platform for modifying plants without genetically modifying the plant genomes.

3. Efficient expression of foreign genes in our chassis.

  • Since we are introducing genes from soil bacteria into E. coli we have to take into account the effect that codon bias can play in the expression of our constructs. Therefore, we have to ensure that expression of our construct is not constrained by this phenomenon.

M1: Overview M1: Design



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