Team:Johns Hopkins/Notebook/Baking

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<a href="https://2011.igem.org/Team:Johns_Hopkins/Notebook/VitExperiments"><img src="https://static.igem.org/mediawiki/2011/0/0a/Menu2vitblack_01.jpg" width="195" height="35" alt=""></a></td>
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<a href="https://2011.igem.org/Team:Johns_Hopkins/Notebook/BCAssay"><img src="https://static.igem.org/mediawiki/2011/3/34/Menu2vitblack_03.jpg" width="177" height="35" alt=""></a></td>
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<a href="https://2011.igem.org/Team:Johns_Hopkins/Notebook/DoughMed"><img src="https://static.igem.org/mediawiki/2011/e/e8/Menu2vitblack_05.jpg" width="120" height="35" alt=""></a></td>
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<a href="https://2011.igem.org/Team:Johns_Hopkins/Notebook/Baking"><img src="
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Part of our Vitayeast project was to see if we could use our yeast in the applications we envisioned. We decided to bake bread out of the Vitamin A strain of yeast.
Part of our Vitayeast project was to see if we could use our yeast in the applications we envisioned. We decided to bake bread out of the Vitamin A strain of yeast.
-
=====Finding the OD of Dry Active Yeast (Store-bought Yeast)=====
+
======Finding the OD of Dry Active Yeast (Store-bought Yeast)======
-
# Mix 1 packet dry active yeast in 250 ml of freshly made YPD, heated up to 45°C.  
+
See protocol [https://2011.igem.org/Team:Johns_Hopkins/Notebook/VitProtocol#Baking here].
-
# Wait 10 minutes, while swirling the mixture occasionally.
+
-
# Measure OD of 1/100 dilution.
+
-
# Calculate total OD of 1 packet.  
+
 +
=====9/13/2011=====
Using the spectrometer, we calculated the following ODs:
Using the spectrometer, we calculated the following ODs:
-
A<sub>600</sub>(1/100)
+
 
-
*0.171 A
+
 
-
*0.080 A
+
{| border="1" cellpadding="5" cellspacing="0" style="margin-left:40px;"
-
*0.290 A  
+
|- style="background-color:#EBEBE9;"
 +
|A<sub>600</sub> (1/100 concentration)
 +
|-
 +
|0.171 A
 +
|-
 +
|0.080 A
 +
|-
 +
|0.290 A  
 +
|}
 +
 
Average: 0.180
Average: 0.180
Line 32: Line 59:
0.180x100 = 18 OD/ml
0.180x100 = 18 OD/ml
-
18 OD/ml * 350 ml = 6312 OD/loaf
+
18 OD/ml * 350 ml = '''6312 OD/loaf'''
The values for this OD were inconsistent, so a second batch of OD was taken.
The values for this OD were inconsistent, so a second batch of OD was taken.
-
A<sub>600</sub>(1/50)\\
+
 
-
0.328 A\\
+
{| border="1" cellpadding="5" cellspacing="0" style="margin-left:40px;"
-
0.360 A\\
+
|- style="background-color:#EBEBE9;"
-
0.377 A\\
+
|A<sub>600</sub> (1/50 concentration)
 +
|-
 +
|0.328 A
 +
|-
 +
|0.360 A
 +
|-
 +
|0.377 A
 +
|}
 +
 
Average: 0.355
Average: 0.355
Line 45: Line 80:
0.355x50 = 17.75 OD/ml
0.355x50 = 17.75 OD/ml
-
17.75 OD/ml*350 ml = 6213 OD/loaf
+
17.75 OD/ml*350 ml = '''6213 OD/loaf'''
This is about 650 colonies.
This is about 650 colonies.
-
====Measuring the OD of a Lawn of Vitamin A Yeast====
+
======Measuring the OD of a Lawn of Vitamin A Yeast======
 +
 
 +
=====9/14/2011=====
 +
We had a lawn of Vitamin A yeast grown out, so we decided to see what the OD of a lawn of this yeast on a plate would be.
 +
 
 +
 
 +
{| border="1" cellpadding="5" cellspacing="0" style="margin-left:40px;"
 +
|- style="background-color:#EBEBE9;"
 +
|A<sub>600</sub>(1/200)
 +
|-
 +
|0.206 A
 +
|-
 +
|0.230 A
 +
|-
 +
|0.206 A
 +
|}
-
A<sub>600</sub>(1/200)\\
 
-
0.206 A\\
 
-
0.230 A\\
 
-
0.206 A\\
 
Use the value 0.206.
Use the value 0.206.
-
0.206 OD/ml*200 = 40 OD/ml x 17 ml = 680 OD
+
0.206 OD/ml*200 = 40 OD/ml x 17 ml = '''680 OD/lawn of Vit A Yeast'''
If we want a 1:1 ratio of Vitamin A yeast to dry yeast, then we would need 9.1 plates. This weighs 0.68 g. Sources on the internet say that the ratio of fresh yeast to dry yeast in bread baking should be 1:2. If this is true, then you need 14 grams, which is 26 small plates.
If we want a 1:1 ratio of Vitamin A yeast to dry yeast, then we would need 9.1 plates. This weighs 0.68 g. Sources on the internet say that the ratio of fresh yeast to dry yeast in bread baking should be 1:2. If this is true, then you need 14 grams, which is 26 small plates.
-
==== Growing Vitamin A Yeast for Bread ====
+
====== Growing Vitamin A Yeast for Bread ======
 +
=====9/15/2011=====
 +
We decided to grow up the yeast cells in culture in multiple 500 ml Erlenmeyer flasks and also grow the wild type of that yeast strain (CEN.PK) for benchmarking purposes. There are three flasks of the Vitamin A yeast and WT each, with 250 ml of YPD media in each flask, and OD measurements were taken to see how concentrated the cultures were.
-
We decided to grow up the yeast cells in culture in multiple 500 ml Erlenmeyer flasks and also grow the wild type of that yeast strain for benchmarking purposes. There are three flasks of the Vitamin A yeast and WT each, with 250 ml of YPD media in each, and OD measurements were taken to see how concentrated the cultures were.
+
=====9/16/2011=====
 +
After one day of incubating those flasks, we took the OD.
-
After one day, we took the OD.
+
0.435 OD/ml * 20 = 8.7 OD/ml * 750 ml = 6525 OD for all three flasks. This means that the total weight would be around 6.5 g.
-
 
+
-
0.435 OD/ml * 20 = 8.7 OD/ml * 750 ml = 6525 for all three flasks. This means that the total weight would be around 6.5 g.
+
We decided to let the yeast incubate further in culture.
We decided to let the yeast incubate further in culture.
-
After another day, we took the OD again.
+
=====9/17/2011=====
 +
 
 +
{| border="1" cellpadding="5" cellspacing="0" style="margin-left:40px;"
 +
|- style="background-color:#EBEBE9;"
 +
|A<sub>600</sub>(1/50)
 +
|-
 +
|0.386 A
 +
|-
 +
|0.388 A
 +
|-
 +
|0.426 A
 +
|}
-
A<sub>600</sub>(1/50) \\
 
-
0.386 A\\
 
-
0.388 A\\
 
-
0.426 A\\
 
Average: 0.400 OD/ml.
Average: 0.400 OD/ml.
-
0.400 OD/ml * 50 = 20 OD/ml * 750 ml = 15000 for all three flasks. This means that the total weight is around 15 g.
+
0.400 OD/ml * 50 = 20 OD/ml * 750 ml = 15000 OD for all three flasks. This means that the total weight is around 15 g.
-
The cells were then placed in a cold room. Two days later, the OD was remeasured, this time for both the WT yeast and the Vitamin A yeast.
+
The cells were then placed in a cold room.
-
WT yeast:
+
=====9/19/2011=====
-
A<sub>600</sub>(1/50)\\
+
-
0.334 A\\
+
-
0.291 A\\
+
-
0.396 A\\
+
-
Average for WT yeast: 0.3403 OD/ml
+
The OD was remeasured, this time for both the WT yeast and the Vitamin A yeast.
-
0.3403 OD/ml * 50 = 17 OD/ml * 750 ml = 12762.5 for all three flasks of WT yeast.
+
-
Vitamin A yeast:
+
 
-
A<sub>600</sub> (1/50)\\
+
{| border="1" cellpadding="5" cellspacing="0" style="margin-left:40px;"
-
0.427 A\\
+
|- style="background-color:#EBEBE9;"
-
0.426 A\\
+
|WT yeast
-
0.383 A\\
+
|Vitamin A yeast
 +
|-
 +
|colspan="2"|A<sub>600</sub>(1/50)  
 +
|-
 +
|0.334 A
 +
|0.427 A
 +
|-
 +
|0.291 A
 +
|0.426 A
 +
|-
 +
|0.396 A
 +
|0.383 A
 +
|}
 +
 
 +
 
 +
Average for WT yeast: 0.3403 OD/ml
 +
0.3403 OD/ml * 50 = 17 OD/ml * 750 ml = '''12762.5 OD''' for all three flasks of WT yeast.
Average for Vitamin A yeast: 0.412 OD/ml
Average for Vitamin A yeast: 0.412 OD/ml
-
0.412 OD/ml * 50 = 20.6 OD/ml = 15450 for all three flasks of Vitamin A yeast
+
0.412 OD/ml * 50 = 20.6 OD/ml = '''15450 OD''' for all three flasks of Vitamin A yeast
-
On 9/19/2011, we decided to test out the Vitamin A yeast for baking.
+
We decided to test out the Vitamin A yeast for baking, finally.
The 20.6 OD/ml translated to about 0.02 g/ml of yeast. We need 14 grams of lab yeast to bake, so this means that we would need 700 ml of the lab yeast to do so.
The 20.6 OD/ml translated to about 0.02 g/ml of yeast. We need 14 grams of lab yeast to bake, so this means that we would need 700 ml of the lab yeast to do so.
 +
 +
We spun down the yeast cells from 700 ml of the cultures and used them to bake in the bread machine. We used the same recipe that we used earlier to bake regular bread.
 +
 +
The final product was made after three hours, and the lab smelled amazing!
 +
 +
<gallery widths=250px>
 +
Image:2011-09-19 16-00-30 356.jpg|In the bread machine
 +
Image:2011-09-19 16-09-24 248.jpg|Bread looks normal!
 +
{...}
 +
</gallery>
 +
 +
======Quantifying beta carotene in Vitabread======
 +
=====9/25/2011 - 9/30/2011=====
 +
Extracted beta carotene from bread baked with Vitayeast, wild type yeasts, and a positive control.
 +
 +
Positive control bread was spiked with 35mg of standard beta carotene before baking.
 +
 +
Extraction procedure:
 +
 +
1. Homogenize 20g of bread with 4ml of water
 +
 +
2. Solubilize with 46ml of extractants, hexane:acetone:ethanol (10:7:6 v/v)
 +
 +
3. Saponify with 8ml of KOH in methanol (40:60 v/v) for an hour.
 +
 +
4. Add 37ml hexane:toluene (30:7 v/v)
 +
 +
5. Take clear phase at the top layer, evaporate, and run HPLC analysis
 +
 +
The procedure for HPLC analysis was similar to that used for quantifying beta carotene in yeast extracts.
 +
Comparison between all extracts showed the presence of beta carotene in bread baked with Vitayeast.
 +
 +
<gallery>
 +
File:Positive control bread.png|Extracts from bread baked with standard beta carotene
 +
File:Bread with wt.png|Extracts from bread baked with wild type yeasts
 +
File:Vitayeast bread.png|Extracts from bread baked with Vitayeast, beta carotene peak at 17.7 minutes.
 +
</gallery>
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Latest revision as of 01:02, 29 October 2011

VitaYeast - Johns Hopkins University, iGEM 2011


Related Links:

Baking Vitabread

Part of our Vitayeast project was to see if we could use our yeast in the applications we envisioned. We decided to bake bread out of the Vitamin A strain of yeast.

Finding the OD of Dry Active Yeast (Store-bought Yeast)

See protocol here.

9/13/2011

Using the spectrometer, we calculated the following ODs:


A600 (1/100 concentration)
0.171 A
0.080 A
0.290 A


Average: 0.180

0.180x100 = 18 OD/ml

18 OD/ml * 350 ml = 6312 OD/loaf

The values for this OD were inconsistent, so a second batch of OD was taken.


A600 (1/50 concentration)
0.328 A
0.360 A
0.377 A


Average: 0.355

0.355x50 = 17.75 OD/ml

17.75 OD/ml*350 ml = 6213 OD/loaf

This is about 650 colonies.

Measuring the OD of a Lawn of Vitamin A Yeast
9/14/2011

We had a lawn of Vitamin A yeast grown out, so we decided to see what the OD of a lawn of this yeast on a plate would be.


A600(1/200)
0.206 A
0.230 A
0.206 A


Use the value 0.206.

0.206 OD/ml*200 = 40 OD/ml x 17 ml = 680 OD/lawn of Vit A Yeast

If we want a 1:1 ratio of Vitamin A yeast to dry yeast, then we would need 9.1 plates. This weighs 0.68 g. Sources on the internet say that the ratio of fresh yeast to dry yeast in bread baking should be 1:2. If this is true, then you need 14 grams, which is 26 small plates.

Growing Vitamin A Yeast for Bread
9/15/2011

We decided to grow up the yeast cells in culture in multiple 500 ml Erlenmeyer flasks and also grow the wild type of that yeast strain (CEN.PK) for benchmarking purposes. There are three flasks of the Vitamin A yeast and WT each, with 250 ml of YPD media in each flask, and OD measurements were taken to see how concentrated the cultures were.

9/16/2011

After one day of incubating those flasks, we took the OD.

0.435 OD/ml * 20 = 8.7 OD/ml * 750 ml = 6525 OD for all three flasks. This means that the total weight would be around 6.5 g.

We decided to let the yeast incubate further in culture.

9/17/2011
A600(1/50)
0.386 A
0.388 A
0.426 A


Average: 0.400 OD/ml.

0.400 OD/ml * 50 = 20 OD/ml * 750 ml = 15000 OD for all three flasks. This means that the total weight is around 15 g.

The cells were then placed in a cold room.

9/19/2011

The OD was remeasured, this time for both the WT yeast and the Vitamin A yeast.


WT yeast Vitamin A yeast
A600(1/50)
0.334 A 0.427 A
0.291 A 0.426 A
0.396 A 0.383 A


Average for WT yeast: 0.3403 OD/ml 0.3403 OD/ml * 50 = 17 OD/ml * 750 ml = 12762.5 OD for all three flasks of WT yeast.

Average for Vitamin A yeast: 0.412 OD/ml 0.412 OD/ml * 50 = 20.6 OD/ml = 15450 OD for all three flasks of Vitamin A yeast

We decided to test out the Vitamin A yeast for baking, finally.

The 20.6 OD/ml translated to about 0.02 g/ml of yeast. We need 14 grams of lab yeast to bake, so this means that we would need 700 ml of the lab yeast to do so.

We spun down the yeast cells from 700 ml of the cultures and used them to bake in the bread machine. We used the same recipe that we used earlier to bake regular bread.

The final product was made after three hours, and the lab smelled amazing!

In the bread machine

Bread looks normal!

Quantifying beta carotene in Vitabread
9/25/2011 - 9/30/2011

Extracted beta carotene from bread baked with Vitayeast, wild type yeasts, and a positive control.

Positive control bread was spiked with 35mg of standard beta carotene before baking.

Extraction procedure:

1. Homogenize 20g of bread with 4ml of water

2. Solubilize with 46ml of extractants, hexane:acetone:ethanol (10:7:6 v/v)

3. Saponify with 8ml of KOH in methanol (40:60 v/v) for an hour.

4. Add 37ml hexane:toluene (30:7 v/v)

5. Take clear phase at the top layer, evaporate, and run HPLC analysis

The procedure for HPLC analysis was similar to that used for quantifying beta carotene in yeast extracts. Comparison between all extracts showed the presence of beta carotene in bread baked with Vitayeast.

Extracts from bread baked with standard beta carotene

Extracts from bread baked with wild type yeasts

Extracts from bread baked with Vitayeast, beta carotene peak at 17.7 minutes.


Retrieved from "http://2011.igem.org/Team:Johns_Hopkins/Notebook/Baking"