Team:UPO-Sevilla/Project/Basic Flip Flop/Overview

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                                     <li><a href="/Team:UPO-Sevilla/Project/Overview" style="white-space: nowrap; float: left;">Project</a><ul></ul></li>
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                                     <li><a href="/Team:UPO-Sevilla/Project/Basic_Flip_Flop" style="white-space: nowrap; float: left;">Basic Flip Flop</a><ul></ul></li>
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                                     <li><a href="/Team:UPO-Sevilla/Project/Basic_Flip_Flop/Overview" style="white-space: nowrap; float: left;">Basic Flip Flop</a><ul></ul></li>
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                            <p>The basic electronic part in a computer is the <strong>flip-flop</strong>, a circuit that can have only two possible states: 0 and 1. These states don’t change unless a new input comes, making this device a good inspiration for a new expression system. In this system the addition of a chemical substance or a change in the environment would result in a response that would be maintained even if the stimulus is retired. But, how is this synthetic regulation pathway made? The <strong>structure</strong> is composed by two repressors and their correspondent promoters.  Each repressor inhibits the expression of the other one and the expression of the repressor is coupled with different fluorescent proteins. In this case we used the promoter PL and its repressor cI with the Plac and lacI system. As reporters for each of the states, we have GFP and RFP. An example in nature is the regulation of lambda phague, when it infects a bacterium and has to decide between lytic or lysogenic cycle.</p>
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                                    <img src="https://static.igem.org/mediawiki/2011/3/32/UPOSevillaflipflop.jpg" alt="Basic Flip Flop" />
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                            <p>The repressor cI is a mutant version that doesn’t work at 42ºC. Then, the system responds to <strong>two different signals</strong>: change of temperature (expression of RFP) and addition of IPTG (expression of GFP). For this device to work properly we need a <strong>strain deficient in LacI</strong>, in our experiments we use MC4100. </p>
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                            <p>These devices has been done and tested before (Gardner, 2000) but the objective of our project is to find a way to improve its performance, either through mathematical modelling or an experimental approach. The basic flip-flop has some flaws in its behaviour such as the long time induction by IPTG and the duration of the change of state. Describing how the bistable works would help the other subteams to see if their genetics constructions actually work as they expected.</p>
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Latest revision as of 22:01, 27 October 2011

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Basic Flip Flop. Overview

The basic electronic part in a computer is the flip-flop, a circuit that can have only two possible states: 0 and 1. These states don’t change unless a new input comes, making this device a good inspiration for a new expression system. In this system the addition of a chemical substance or a change in the environment would result in a response that would be maintained even if the stimulus is retired. But, how is this synthetic regulation pathway made? The structure is composed by two repressors and their correspondent promoters. Each repressor inhibits the expression of the other one and the expression of the repressor is coupled with different fluorescent proteins. In this case we used the promoter PL and its repressor cI with the Plac and lacI system. As reporters for each of the states, we have GFP and RFP. An example in nature is the regulation of lambda phague, when it infects a bacterium and has to decide between lytic or lysogenic cycle.

Basic Flip Flop

The repressor cI is a mutant version that doesn’t work at 42ºC. Then, the system responds to two different signals: change of temperature (expression of RFP) and addition of IPTG (expression of GFP). For this device to work properly we need a strain deficient in LacI, in our experiments we use MC4100.

These devices has been done and tested before (Gardner, 2000) but the objective of our project is to find a way to improve its performance, either through mathematical modelling or an experimental approach. The basic flip-flop has some flaws in its behaviour such as the long time induction by IPTG and the duration of the change of state. Describing how the bistable works would help the other subteams to see if their genetics constructions actually work as they expected.

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