Team:Tokyo Metropolitan/Project/Killing

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<font size="5">Reference</font><hr>
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[1]CHUNG-YU CHANG, KIEBANG NAM, AND RY YOUNG1. 1995.2 S Gene Expression and the Timing of Lysis by Bacteriophage λ. J. Bacteriol. 177: 3283–3294<br>
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[1]University of Birmingham, Horizontal gene transfer (HGT) in biofilms (http://www.birmingham.ac.uk/schools/biosciences/staff/profile.aspx?ReferenceId=6059)<br>
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[2]CHUNG-YU CHANG, KIEBANG NAM, AND RY YOUNG1. 1995.2 S Gene Expression and the Timing of Lysis by Bacteriophage λ. J. Bacteriol. 177: 3283–3294<br>
[2]Maria A. Schumacher, Marshall C. Miller, Steve Grkovic, Melissa H. Brown, Ronald A. Skurray and Richard G. Brennan. 2002 Structural basis for cooperative DNA binding by two dimers of the multidrug-binding protein QacR<br>
[2]Maria A. Schumacher, Marshall C. Miller, Steve Grkovic, Melissa H. Brown, Ronald A. Skurray and Richard G. Brennan. 2002 Structural basis for cooperative DNA binding by two dimers of the multidrug-binding protein QacR<br>

Revision as of 10:32, 5 October 2011
Killing Device

Concept
When bee attack enemy, they sting needle and inject toxin. In Japan, the most cause of death from animal is attacted from bee (especially wasp).Bee is awful animal but taking a hint from it, we propose new system for killing bacteria using conjugation.

Conjugation
E.coli has sex. “Male” E.coli (having conjugative plasmid) mate other “Female“ E.coli(not having conjugative plasmid). Male E.coli transfer conjugative plasmid to Female E.coli. Then, after conjugation, Female E.coli gets conjugative plasmid and change sex “male”.
Conjugation is useful system for killing bacteria. We plan to integrate killing gene (below-mentioned) into the conjugative plasmid and induce this plasmid into E.coli. Then E.coli conjugate other E.coli and send killing gene which induce E.coli to cell lysis when it expressed.

Cell Lysis
Bacteriophage have cell lysis cassette Holin-Endolysin. Holin forms hole on outer membrane of host cell.
Endolysin is degradation peptide glycan in intermediate membrane of host cell.
Figure2 Bacteriophage Lysis Casstte
Anti-killer device
To prevent cell lysis of BeE.coli itself, anti-killing device is needed. We chose pTet-TetR system for repressing expression of Killing gene. TetR bind tet operator (TetO) and inhibit expression of tetracycline resistance gene. But in existence tetracycline, TetR formed complex with tetracycline and lost ability of binding tetO.
Then tetracycline resistance gene expressed. aTc (Anhydrotetracycline) is known as analog of tetracycline so aTc bind TetR like tetracycline and inhibit TetR to binding tetO.
Ptet-TetR system is appropriate Anti-killer Device. In BeE.coli, TetR is expressed constitutively and repressed expression of killing gene. But killing gene has sent to other bacteria which doesn’t have tetR. Then conjugated bacteria cell lysis. In addition, from point of view of biosafety, to add aTc induce BeE.coli to cell lysis.
Figure3: TetR is transcription regulator


Figure4: Killing Concept


Parts Design
Killing Device
BBa_K543016

 Anti-killing Device
BBa_K543015


Result
Repress expression of GFP by Anti-killing device
We confirm whether Anti-killing Device is working or not. We transform Anti-killing Device into E.coli which have GFP generator(I13522:Ptet-B0034-GFP-B0015) and observe its florescence. Figure2 is a result of this experiment. Left is E.coli transformed Anti-killing Device, right is control. Although not perfectly repressed GFP expression, we confirmed Anti-killing Device is working. Figure5 is difference of GFP florescence by comparing with absorbance of 525nm. For perfectly repressed expression cording under Ptet, RBS is needed to be more strong(ex.B0034).In addition, we should do more experience to get quantitative date.
Figure5: repress expression of GFP by Anti-killing device
Sequence analysis
We check sequence of P0440(B0034-C0040-B0010-B0012).But we can’t confirmed correct sequence but, instead of P0440, we checked this sequence is partial (100% homology).


Reference
[1]University of Birmingham, Horizontal gene transfer (HGT) in biofilms (http://www.birmingham.ac.uk/schools/biosciences/staff/profile.aspx?ReferenceId=6059)
[2]CHUNG-YU CHANG, KIEBANG NAM, AND RY YOUNG1. 1995.2 S Gene Expression and the Timing of Lysis by Bacteriophage λ. J. Bacteriol. 177: 3283–3294
[2]Maria A. Schumacher, Marshall C. Miller, Steve Grkovic, Melissa H. Brown, Ronald A. Skurray and Richard G. Brennan. 2002 Structural basis for cooperative DNA binding by two dimers of the multidrug-binding protein QacR

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