Team:Arizona State/Project/Software

(Difference between revisions)

Revision as of 04:09, 27 September 2011

CRISPR Studio

CRISPR information panel of the CRISPRstudio

We have developed a tool to assist in the development of synthetic CRISPR systems.

Pick spacers from a source sequence, based on homology with the target genome, hairpinning potential, restriction sites, and known PAMs.
Output arrays with various formats based on generated spacers.
Display and gather CRISPR information using a database cultivated from several sources.

Downloads (coming soon)

Sources

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 {{:Team:Arizona State/Templates/main|title=CRISPR Studio|content=
 &nbsp;
-[[File:ASU crisprstudio ss.jpg|thumb]]
+[[File:ASU crisprstudio ss.jpg|thumb|CRISPR information panel of the CRISPRstudio]]
 We have developed a tool to assist in the development of synthetic CRISPR systems.
 * Pick spacers from a source sequence, based on homology with the target genome, hairpinning potential, restriction sites, and known PAMs.
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 ----
 * Python source:
-:* Dependencies: BioPython, NumPy, WxPython
+:* Dependencies: BioPython, NumPy, WxPython, BLAST+
 * Executable:
 '''Sources'''
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 * [http://cmr.jcvi.org/tigr-scripts/CMR/CmrHomePage.cgi JCVI CMR]
 * [http://crispi.genouest.org/ CRISPI]
+* NCBI
 }}