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Team:EPF-Lausanne/Protocols/TetR
From 2011.igem.org
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* Put mix in PCR thermal cycler | * Put mix in PCR thermal cycler | ||
| - | * Program the PCR thermal cycler: <b>1.</b> 98°C for 30s <b>2.</b> 98°C for 7.5 seconds <b>3.</b> 58°C for 20 sec (this depends on the primers, therefore look up the annealing temperature of the primers used) <b>4.</b> 72°C you have to calculate the time required. This polymerase has an effciency of 15-30s/kb. (calculate for the longest fragment) <b>6.</b> 72°C for 5 min <b>7.</b> 4°C "forever" | + | * Program the PCR thermal cycler: <b>1.</b> 98°C for 30s <b>2.</b> 98°C for 7.5 seconds <b>3.</b> 58°C for 20 sec (this depends on the primers, therefore look up the annealing temperature of the primers used) <b>4.</b> 72°C for 15 sec; you have to calculate the time required. This polymerase has an effciency of 15-30s/kb. (calculate for the longest fragment) <b>6.</b> 72°C for 5 min <b>7.</b> 4°C "forever" |
*Save the file in the MAIN folder→ OK→ SAVE→RUN→Select the block you use→ RUN→ Change sample volume to 50µl, LidT should be 105°C and the box just below ("hotlid") should ALWAYS be checked | *Save the file in the MAIN folder→ OK→ SAVE→RUN→Select the block you use→ RUN→ Change sample volume to 50µl, LidT should be 105°C and the box just below ("hotlid") should ALWAYS be checked | ||
*Press STATUS to check the progress | *Press STATUS to check the progress | ||
Revision as of 14:21, 20 June 2011
Linear template- TetR
Two step extension PCR
Materials
- 10µl 5x iProof HF buffer
- 0.5 µl of each primer
- 1 µl dNTP mix of 10mM
- 0.5 µl High Fidelity Polymerase
- 1 µl DNA template
- 36.5 µl H2O
Protocol
- Put mix in PCR thermal cycler
- Program the PCR thermal cycler: 1. 98°C for 30s 2. 98°C for 7.5 seconds 3. 58°C for 20 sec (this depends on the primers, therefore look up the annealing temperature of the primers used) 4. 72°C for 15 sec; you have to calculate the time required. This polymerase has an effciency of 15-30s/kb. (calculate for the longest fragment) 6. 72°C for 5 min 7. 4°C "forever"
- Save the file in the MAIN folder→ OK→ SAVE→RUN→Select the block you use→ RUN→ Change sample volume to 50µl, LidT should be 105°C and the box just below ("hotlid") should ALWAYS be checked
- Press STATUS to check the progress
