Team:DTU-Denmark/Restriction protocol
From 2011.igem.org
(Difference between revisions)
Line 16: | Line 16: | ||
* Put it in the incubator 37°C for 60 min | * Put it in the incubator 37°C for 60 min | ||
* 15 minutes on heat block 65°C to deactivate enzyme | * 15 minutes on heat block 65°C to deactivate enzyme | ||
- | * | + | * Place on ice |
Enzyme selection for BioBricks digest | Enzyme selection for BioBricks digest | ||
Line 26: | Line 26: | ||
Downstream Insert - X,P | Downstream Insert - X,P | ||
Upstream Insert - E,S | Upstream Insert - E,S | ||
- | Vector with downstream part- E,X | + | Vector with downstream part - E,X |
E= EcoRI X= XbaI S= SpeI P= PstI | E= EcoRI X= XbaI S= SpeI P= PstI |
Revision as of 15:20, 18 September 2011
Restriction/Digestion
Restriction/Digestion
Materials:
- 25 µL DNA (but varies depending on your DNA conc.)
- 10 µL FD-buffer
- 1 µL restriction enzyme (1 & 2) (you can also use 2.5µL of each RE, which showed good results in previous digestions (AJ+PF))
- Using 1µL RE: 63ul ddH2O. Using 2.5µL RE: 60 µL ddH2O (Total volume of 100 µL)
- Turn the thermo block on 30 min before use. Mix everything – add the enzymes last. Leave for 2 hour at 37 C in thermo block/incubator.
- To deactivate the enzyme leave it at 65 C in a thermo block for 10 min.
- Keep on ice until its cooled down.
IMPORTANT: If you only use one RE on your plasmid SAP treatment is required:
- Mix 50µL of the restricted DNA with 2.5µL SAP and 5µL SAP-buffer
- Put it in the incubator 37°C for 60 min
- 15 minutes on heat block 65°C to deactivate enzyme
- Place on ice
Enzyme selection for BioBricks digest A BioBricks part:
-E--X---Part---S--P-
Vector with upstream part - S,P Downstream Insert - X,P Upstream Insert - E,S Vector with downstream part - E,X
E= EcoRI X= XbaI S= SpeI P= PstI
Enzymes should be kept in the icebox from the freezer at all times.