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Team:Washington/Primers
From 2011.igem.org
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{{Template:Team:Washington/Templates/Top}} | {{Template:Team:Washington/Templates/Top}} | ||
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For info on [http://en.wikipedia.org/wiki/Help:Table#Sorting Wiki Tables] | For info on [http://en.wikipedia.org/wiki/Help:Table#Sorting Wiki Tables] | ||
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=PCR Conditions and Primers of Registry Parts= | =PCR Conditions and Primers of Registry Parts= | ||
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| S || BBa_XYZ001 || M || Synthesized Gene || EX_Decarb_F || RedDecarb_SP_2 || 60 || 30 || 0 || Phusion || GTTTCTTCGAATTCGCGGCCGCTTCTAGATGCCGCAGCTGGAA || CCAATGCATTGGTTCTGCAGCGGCCGCTACTAGTATCAGTGGTGGTGGTG || Original reverse primer was missing extra nucleotides at end, so amplification worked, cloning didn't | | S || BBa_XYZ001 || M || Synthesized Gene || EX_Decarb_F || RedDecarb_SP_2 || 60 || 30 || 0 || Phusion || GTTTCTTCGAATTCGCGGCCGCTTCTAGATGCCGCAGCTGGAA || CCAATGCATTGGTTCTGCAGCGGCCGCTACTAGTATCAGTGGTGGTGGTG || Original reverse primer was missing extra nucleotides at end, so amplification worked, cloning didn't | ||
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| + | | S || ### ||M || Gene from Collaborator || KumaCloning-F || KumaCloning-R || 66 || 60 || 0 || Phusion || GTTTCTTCGAATTCGCGGCCG || GTTTCTTTCCTGCAGCGGCCGG || These primers amplify the Kumamolisin gene, adding standard BioBrick ends for cloning. | ||
| + | |- | ||
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| Fill || Fill || Fill || Fill || Fill || Fill || Fill || Fill || Fill || Fill || Fill || Fill || Fill | | Fill || Fill || Fill || Fill || Fill || Fill || Fill || Fill || Fill || Fill || Fill || Fill || Fill | ||
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|} | |} | ||
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==LEGEND== | ==LEGEND== | ||
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*Primer Name: The name of the primer ordered | *Primer Name: The name of the primer ordered | ||
*Additional Notes: Any additional relevant information | *Additional Notes: Any additional relevant information | ||
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==Tool== | ==Tool== | ||
| - | [ | + | [http://excel2wiki.net/index.php Excel to wiki format tool] |
| - | Recreate the table exactly | + | Recreate the table exactly in excel and fill in with data |
Copy the all the data (no header) into the box | Copy the all the data (no header) into the box | ||
| Line 59: | Line 67: | ||
Copy the code starting with the line that looks like |- do not copy header stop copying at |- as well | Copy the code starting with the line that looks like |- do not copy header stop copying at |- as well | ||
| - | Paste into this page's code | + | Paste into this page's code in the blank line above the |fill|fill| etc line |
| + | |||
=EXAMPLE TABLE (DO NOT MODIFY)= | =EXAMPLE TABLE (DO NOT MODIFY)= | ||
Latest revision as of 20:24, 15 September 2011
For info on [http://en.wikipedia.org/wiki/Help:Table#Sorting Wiki Tables]
PCR Conditions and Primers of Registry Parts
Please fill out for every PCR reaction done on a registry part (both new and old).
| Amplification Success (S, M, N) | Template Part # | Template Form (M, C, P) | Template Source | Forward Primer Name | Reverse Primer Name | Annealing Temperature (Celsius) | Extension Time (seconds) | Percent DMSO | Polymerase Used | Forward Primer (5'->3') | Reverse Primer (5'->3') | Additional Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| S | BBa_XYZ001 | M | Synthesized Gene | EX_Decarb_F | RedDecarb_SP_2 | 60 | 30 | 0 | Phusion | GTTTCTTCGAATTCGCGGCCGCTTCTAGATGCCGCAGCTGGAA | CCAATGCATTGGTTCTGCAGCGGCCGCTACTAGTATCAGTGGTGGTGGTG | Original reverse primer was missing extra nucleotides at end, so amplification worked, cloning didn't |
| S | ### | M | Gene from Collaborator | KumaCloning-F | KumaCloning-R | 66 | 60 | 0 | Phusion | GTTTCTTCGAATTCGCGGCCG | GTTTCTTTCCTGCAGCGGCCGG | These primers amplify the Kumamolisin gene, adding standard BioBrick ends for cloning. |
| Fill | Fill | Fill | Fill | Fill | Fill | Fill | Fill | Fill | Fill | Fill | Fill | Fill |
LEGEND
- Amplification Success (S, M, N): Was the amplification successful.
- S = Single Band at Desired Size
- M = Multiple Bands, but one at desired length
- N = No band at desired length
- Template Part #: The Registry Number of the Part being amplified from
- Template Form: The source form of the template DNA
- Miniprep (M)
- Colony (C)
- PCR Product (P)
- Template Source: Where the template is originally from, such as 2011 Parts Kits, Synthesized Gene, Genomic, etc
- Forward Primer (5'->3'): Full sequence of the Forward primer used
- Reverse Primer (5'->3'): Full sequence of the Reverse primer used
- Annealing Temperature (Celsius): The annealing temperature used in the PCR reaction
- Extension Time (seconds): The extension time used in the PCR reaction
- Percent DMSO: Was DMSO added, if not 0, if so at what %
- Polymerase Used: Which polymerase enzyme was used (e.g. Phusion, Taq, Vent, Pfu, etc)
- Primer Name: The name of the primer ordered
- Additional Notes: Any additional relevant information
Tool
[http://excel2wiki.net/index.php Excel to wiki format tool]
Recreate the table exactly in excel and fill in with data
Copy the all the data (no header) into the box
Copy the code starting with the line that looks like |- do not copy header stop copying at |- as well
Paste into this page's code in the blank line above the |fill|fill| etc line
EXAMPLE TABLE (DO NOT MODIFY)
| Alphabetic | Numeric | Date | Unsortable |
|---|---|---|---|
| d | 20 | 2008-11-24 | This |
| b | 8 | 2004-03-01 | column |
| a | 6 | 1979-07-23 | cannot |
| c | 4.2 | 1492-12-08 | be |
| e | 0 | 1601-08-13 | sorted. |
